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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Aardal, M. A. & Aranha, D. F. (2024). 2DT-GLS: Faster and Exception-Free Scalar Multiplication in the GLS254 Binary Curve. In B. Smith & H. Wu (Eds.), Selected Areas in Cryptography - 29th International Conference, SAC 2022, Revised Selected Papers (Vol. 13742, pp. 53-74). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-58411-4_3
Aardal, M. A., Adj, G., F. Aranha, D., Basso, A., Canales Martínez, I. A., Chávez-Saab, J., Corte-Real Santos, M., Dartois, P., De Feo, L., Duparc, M., Komada Eriksen, J., Fouotsa, T. B., Filho, D. L. G., Hess, B., Kohel, D., Leroux, A., Longa, P., Maino, L., Meyer, M. ... Wesolowski, B. (2025). SQIsign 2.0: Algorithm specifications and supporting documentation. https://sqisign.org/spec/sqisign-20250205.pdf
Aarhus, R., Ballegaard, S. A. & Hansen, T. R. (2009). The eDiary: Bridging home and hospital through healthcare technology. In E. Balka, L. Ciolofi, C. Simone, H. Tellioglu & I. Wagner (Eds.), Proceedings of the 11th European Conferenceon Computer Supported Cooperative Work (pp. 63-83). Springer. https://doi.org/10.1007/978-1-84882-854-4_4
Aarhus, R., Ballegaard, S. A., Grönvall, E. & Larsen, S. B. (2009). Ageing in communal place: ethnographic studies of social interaction in senior housing communities. In Supplementary Proceeding of the 11th European Conference on Computer Supported Cooperative Work: Workshops, Master classes.  W3: Enhancing interaction spaces by social media for the ederly ECSCW - European Conference on Computer Supported Cooperative Work. http://www.uni-siegen.de/locatingmedia/workshops/ecscwageingworkshop/ageing_in_communal_place_aarhus_ballegaard_groenvall_larsenl.pdf
Aarhus, R., Grönvall, E. & Larsen, S. B. (2010). Interactive Healthcare Systems in the Home: Vestibular Rehabilitation. In G. R. Hayes & D. S. Tan (Eds.), Wish: the First International Workshop on Interactive Systems for Healthcare (pp. 1-4). Dealer Analysis Group. http://www.chi2010.org/wish/resources/WISH2010Proceedings.pdf
Aarhus, R. & Ballegaard, S. A. (2010). Negotiating boundaries: managing disease at home. In E. Mynatt (Ed.), Proceedings of the 28th international conference on human factors in computing systems. CHI '10 (pp. 1223-1232). Association for Computing Machinery. https://doi.org/10.1145/1753326.1753509
Aarhus, R., Gjerlufsen, T., Hohn, T. & Vesterby, M. (2010). Telemedicine for Healthy Patients. In Infrastructure for Health Care: Connecting practices across institutional and professional boundaries (pp. 5-6). University of Copenhagen. http://www.sundhedsit.net/fileadmin/sundhedsitnet/Downloads/Abstracts_Infrastructures09.pdf
Aarhus, R., Cedergren, A., Grönvall, E., Hald, A. E., Larsen, S. B., Moesgaard, T. & Wollsen, S. (2010). Wii i Trige: Et projekt om Wii, motivation og ældres træning. D A I M I P B, (592).
Aaserud, F. & Nielsen, H. (2006). Niels Bohrs verdenscenter for teoretisk fysik. In H. Nielsen & K. H. Nielsen (Eds.), Viden uden grænser - Dansk Naturvidenskabs Historie 4, 1920-1970 (1 ed., pp. 41-66). Aarhus Universitetsforlag.
Aaskov, M. L., Nelson, D., Lauridsen, H., Huong, D. T. T., Ishimatsu, A., Crossley, II, D. A., Malte, H. & Bayley, M. (2023). Do air-breathing fish suffer branchial oxygen loss in hypoxic water? Proceedings of the Royal Society B: Biological Sciences, 290(2006), Article 20231353. https://doi.org/10.1098/rspb.2023.1353
Aaskov, M. L., Ishimatsu, A., Nyengaard, J. R., Malte, H., Lauridsen, H., Ha, N. T. K., Do Thi, T. H. & Bayley, M. (2024). Modulation of gill surface area does not correlate with oxygen loss in Chitala ornata. Proceedings of the Royal Society B: Biological Sciences, 291(2033), Article 20241884. https://doi.org/10.1098/rspb.2024.1884
Aastrup, P., Aronsson, M., Barry, T., Christensen, T., Cuyler, C., Doyle, M., Falk, K., Fox, A. D., Heiðmarsson, S., Helgason, H., Ibarguchi, G., Krogh, P. H., Lárusson, K. F., Murray, M., Payne, J., Price, C., Rasch, M., Salmela, J., Soloviev, M. ... Williams, S. (2014). Terrestrial Steering Group. 2014. Arctic Terrestrial Biodiversity Monitoring Plan: Implementation and work plan Akureyri, Iceland, February 25-27, 2014. CAFF International Secretariat, Akureyri, Iceland. CAFF Monitoring Series Report No. 11 http://www.caff.is/publications/doc_download/272-arctic-terrestrial-biodiversity-monitoring-plan-implementation-and-work-plan-akureyri-iceland-february-25-27-2014
Aastrup, P., Nymand, J., Raundrup, K., Olsen, M., Lauridsen, T. L., Krogh, P. H., Schmidt, N. M., Illeris, L. & Ro-Poulsen, H. (2015). Conceptual design and sampling procedures of the biological programme of NuukBasic. (2nd edition ed.) Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy No. 158
Abad, M., Menéndez, C., Füchtbauer, A. C., Serrano, M., Füchtbauer, E.-M. & Palmero, I. (2007). Ing1 mediates p53 accumulation and chromatin modification in respones to oncogenic stress. Journal of Biological Chemistry, 282(42), 31060-31067.
Abam, M., de Berg, M. & Gudmundsson, J. (2008). A Simple and Efficient Kinetic Spanner. In M. Teillaud (Ed.), Annual Symposium on Computational Geometry: Proceedings of the twenty-fourth annual symposium on Computational geometry (Vol. SESSION 9A, pp. 306-310). Association for Computing Machinery.
Abam, M., de Berg, M. & Poon, S.-H. (2008). Fault-Tolerant Conflict-Free Coloring. In S. Wismath (Ed.), 20th Canadian Conference in Computational Geometry: CCCG 2008 (Vol. Session 7B, pp. 95-98). The CCCG Library. http://cccg.ca/proceedings/2008/paper23.pdf
Abam, M. & de Berg, M. (2009).  Kinetic spanners in Rd. In J. Hershberger & E. Fogel (Eds.), Annual Symposium on Computational Geometry: SESSION: Monday, June 8th, 10:50-11:50 am (pp. 43-50). Association for Computing Machinery. https://doi.org/10.1145/1542362.1542371
Abam, M., de Berg, M., Farshi, M., Gudmundsson, J. & Smid, M. (2009). Geometric Spanners for Weighted Point Sets. Lecture Notes in Computer Science, 190-202. https://doi.org/10.1007/978-3-642-04128-0_17
Abam, M., de Berg, M., Farshi, M. & Gudmundsson, J. (2009). Region-fault tolerant geometric spanners. Discrete & Computational Geometry, 41(4), 556-582. https://doi.org/10.1007/s00454-009-9137-7
Abam, M., de Berg, M. & Gudmundsson, J. (2009). A simple and efficient kinetic spanner . Computational Geometry, 43(3), 251-256.
Abam, M., Carmi, P., Farshi, M. & Smid, M. (2009). On the Power of the Semi-Separated Pair Decomposition. Lecture Notes in Computer Science, 1-12. https://doi.org/10.1007/978-3-642-03367-4_1
Abam, M., de Berg, M., Hachenberger, P. & Zarei, A. (2010). Streaming Algorithms for Line Simplification. Discrete & Computational Geometry, 43(3), 497-515. https://doi.org/10.1007/s00454-008-9132-4
Abam, M., de Berg, M., Agrawal, P. & Yu, H. (2011). Out-of-order event processing in kinetic data structures. Algorithmica, 60(2), 250-273. https://doi.org/10.1007/s00453-009-9335-y
Abam, M. A., Daneshpajouh, S., Deleuran, L., Ehsani, S. & Ghodsi, M. (2014). Computing homotopic line simplification. Computational Geometry, 47(7), 728-739. https://doi.org/10.1016/j.comgeo.2014.02.002
Abascal, F., Corvelo, A., Cruz, F., Villanueva-Cañas, J. L., Vlasova, A., Marcet-Houben, M., Martínez-Cruz, B., Cheng, J. Y., Prieto, P., Quesada, V., Quilez, J., Li, G., García, F., Rubio-Camarillo, M., Frias, L., Ribeca, P., Capella-Gutiérrez, S., Rodríguez, J. M., Câmara, F. ... Godoy, J. A. (2016). Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology (Online), 17(1), 251. Article 251. https://doi.org/10.1186/s13059-016-1090-1
Abate, C., Haselwarter, P. G., Rivas, E., Muylder, A. V., Winterhalter, T., Hriţcu, C., Maillard, K. & Spitters, B. (2021). SSProve: A Foundational Framework for Modular Cryptographic Proofs in Coq. In Proceedings - 2021 IEEE 34th Computer Security Foundations Symposium, CSF 2021 IEEE. https://doi.org/10.1109/CSF51468.2021.00048
Abate, C., Haselwarter, P. G., Rivas, E., Muylder, A. V., Winterhalter, T., Hritcu, C., Maillard, K. & Spitters, B. (2021). SSProve: A Foundational Framework for Modular Cryptographic Proofs in Coq. (pp. 397). Cryptology ePrint Archive. https://eprint.iacr.org/2021/397
Abazajian, K. N., Calabrese, E., Cooray, A., de Bernardis, F., Dodelson, S., Friedland, A., Fuller, G. M., Hannestad, S., Keating, B. G., Linder, E. V., Lunardini, C., Melchiorri, A., Miquel, R., Pierpaoli, E., Pritchard, J., Serra, P., Takada, M. & Wong, Y. Y. Y. (2011). Cosmological and astrophysical neutrino mass measurements. Astroparticle Physics, 35(4), 177-184. https://doi.org/10.1016/j.astropartphys.2011.07.002
Abazajian, K. N., Acero, M. A., Agarwalla, S. K., Aguilar-Arevalo, A. A., Albright, C. H., Antusch, S., Arguelles, C. A., Balantekin, A. B., Barenboim, G., Barger, V., Bernardini, P., Bezrukov, F., Bjaelde, O. E., Bogacz, S. A., Bowden, N. S., Boyarsky, A., Bravar, A., Bravo Berguno, D., Brice, S. J. ... Zhang, H. (2012). Light Sterile Neutrinos: A White Paper. ArXiv. https://doi.org/10.48550/arXiv.1204.5379

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Zhu, L., Hughes, A. C., Zhao, X. Q., Zhou, L. J., Ma, K. P., Shen, X. L., Li, S., Liu, M. Z., Xu, W. B. & Watson, J. E. M. (2021). Regional scalable priorities for national biodiversity and carbon conservation planning in Asia. Science Advances, 7(35), Article eabe4261. https://doi.org/10.1126/sciadv.abe4261
Zhu, P., Wang, Y., Sheng, W., Yu, M., Wei, W., Sun, W., Gao, J., Xu, Z., Cao, M., Wang, Y., Liu, L. & Guo, W. (2025). Salinity Effect on Soil Bacterial and Archaeal Diversity and Assembly in Phragmites australis Salt Marshes in the Qaidam Basin, China. Microorganisms, 13(6), Article 1253. https://doi.org/10.3390/microorganisms13061253
Zhou, Z., Man, X., Wang, S., Wang, X., Li, W., Chen, Y., Yuan, Z. & Guo, E. (2022). Temporal Partitioning of Fungal Sporophores in a Temperate Deciduous Broad-Leaved Forest. Diversity, 14(6), Article 483. https://doi.org/10.3390/d14060483
Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023). Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution, 7(7), 1114-1130. https://doi.org/10.1038/s41559-022-01974-x
Zhou, P., Ye, S., Xie, L., Krauss, K. W., Pei, L., Chapman, S. K., Brix, H., Laws, E. A., Yuan, H., Yang, S., Ding, X. & Xie, S. (2023). Tidal restriction likely has greater impact on the carbon sink of coastal wetland than climate warming and invasive plant. Plant and Soil, 492(1-2), 135-156. https://doi.org/10.1007/s11104-023-06160-x
Zhou, S. Q., Yu, Z. W., Wu, W. B., Yang, W. J., Zhang, Y. J., Hao, Y. Y., Yuan, Q., Xu, D. F., Hu, J. Y. & Zhao, B. (2025). Quantifying cumulative cooling threshold of greenspaces using a newly developed 3D model across global cities. Remote Sensing of Environment, 328, Article 114867. https://doi.org/10.1016/j.rse.2025.114867
Zhivotovsky, L. A., Feldman, M. W. & Christiansen, F. (1994). Evolution of recombination among multiple selected loci: A generalized reduction principle. Proceedings of the National Academy of Sciences (PNAS), 91, 1079–1083.
Zheng, T., Brittain, T., Watmough, N. J. & Weber, R. E. (1999). The role of amino acid alpha38 in the control of oxygen binding to human adult and embryonic haemoglobin Portland. Biochemical Journal, 343 Pt 3, 681-5.
Zhao, M., Han, G., Li, J., Song, W., Qu, W., Eller, F., Wang, J. & Jiang, C. (2020). Responses of soil CO2 and CH4 emissions to changing water table level in a coastal wetland. Journal of Cleaner Production, 269, Article 122316. https://doi.org/10.1016/j.jclepro.2020.122316
Zhao, M., Han, G., Wu, H., Song, W., Chu, X., Li, J., Qu, W., Li, X., Wei, S., Eller, F. & Jiang, C. (2020). Inundation depth affects ecosystem CO2 and CH4 exchange by changing plant productivity in a freshwater wetland in the Yellow River Estuary. Plant and Soil, 454(1-2), 87-102. https://doi.org/10.1007/s11104-020-04612-2
Zhao, M., Li, P., Song, W., Chu, X., Eller, F., Wang, X., Liu, J., Xiao, L., Wei, S., Li, X. & Han, G. (2023). Inundation depth stimulates plant-mediated CH4 emissions by increasing ecosystem carbon uptake and plant height in an estuarine wetland. Functional Ecology, 37(3), 536-550. https://doi.org/10.1111/1365-2435.14258
Zhao, L. N., Liu, Y., Ye, J. F., Liu, B., Hu, H. H., Lu, L. M., Chang, J., Guralnick, R. P., Sun, M. & Chen, Z. D. (2025). Flowering plants at Sino-Himalaya and the Tibetan Plateau face increased extinction risk. Journal of Systematics and Evolution, 63(1), 148-159. https://doi.org/10.1111/jse.13160
Zhao, Y., Yu, D., Kuo, W., Huang, J., Guo, J., Sun, M., Hu, Y., Soltis, D. E., Soltis, P. S., Ma, H. & Huang, C. H. (2025). Nuclear phylogenomics provide evidence to clarify key morphological evolution and whole-genome duplication across rosids. Journal of Integrative Plant Biology, 67(10), 2704-2730. https://doi.org/10.1111/jipb.13972
Zhang, Y., Lv, T., Carvalho, P., Arias, C. A. & Brix, H. (2014). Can wetland plants take up two pharmaceutical compounds under hydroponic conditions?. Abstract from 2nd Pan-American Conference on Wetland Systems for the management, treatment and improvement of water quality, Morelia, Mexico.
Zhang, Y., Lv, T., Carvalho, P., Arias, C. A. & Brix, H. (2014). The fate of two pharmaceuticals in hydroponic monoculture: five different plants comparison. Abstract from 14th International Conference on Wetland Systems for Water Pollution Control, Shanghai, China.
Zhang, J., Hao, Z., Song, B., Li, B., Wang, X. & Ye, J. (2009). Fine-scale species co-occurrence patterns in an old-growth temperate forest. Forest Ecology and Management, 257(10), 2115-2120.
Zhang, J., Hao, Z., Sun, I. .-F., Song, B., Ye, J., Li, B. & Wang, X. (2009). Density dependence on tree survival in an old-growth temperate forest in northeastern China. Annals of Forest Science, 66(2), 204-204.
Zhang, J., Song, B., Li, B.-H., Ye, J., Wang, X.-G. & Hao, Z.-Q. (2010). Spatial patterns and associations of six congeneric species in an old-growth temperate forest. Acta Oecologica, 36(1), 29-38.
Zhang, J., Nielsen, S. E., Stolar, J., Chen, Y. & Thuiller, W. (2015). Gains and losses of plant species and phylogenetic diversity for a northern high-latitude region. Diversity and Distributions, 21(12), 1441-1454. https://doi.org/10.1111/ddi.12365
Zhang, L., Carvalho, P., Lyu, T., Zhang, Y., Arias, C. A. & Brix, H. (2016). Constructed wetland design effects on ibuprofen removal – a mesocosm scale study. Abstract from 15th IWA Specialist Conference on Wetland Systems for Water Pollution Control, Gdansk, Poland.
Zhang, J., Nielsen, S. E., Chen, Y., Georges, D., Qin, Y., Wang, S. S., Svenning, J. C. & Thuiller, W. (2017). Extinction risk of North American seed plants elevated by climate and land-use change. Journal of Applied Ecology, 54(1), 303-312. https://doi.org/10.1111/1365-2664.12701
Zhang, D., Alex Shorter, K., Rocho-Levine, J., Van Der Hoop, J., Moore, M. & Barton, K. (2018). Behavior inference from bio-logging sensors: A systematic approach for feature generation, selection and state classification. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (Vol. 2). Article DSCC2018-9213 American Society of Mechanical Engineers. https://doi.org/10.1115/DSCC2018-9213
Zhang, D., van der Hoop, J. M., Petrov, V., Rocho-Levine, J., Moore, M. J. & Shorter, K. A. (2020). Simulated and experimental estimates of hydrodynamic drag from bio-logging tags. Marine Mammal Science, 36(1), 136-157. https://doi.org/10.1111/mms.12627