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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kristensen, L. M. & Mailund (2003). Efficient Path Finding with the Sweep-Line Method using External Storage. In Proceedings of International Conference on Formal Engineering Methods (ICFEM 2003) (pp. 319-337)
Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)
Mailund, Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)
Christiansen, C., Mailund, Pedersen, C. N. S. & Randers, M. (2005). Quartet Distance between General Trees. In Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM) (pp. 796-799)
Christiansen, C., Mailund, Pedersen, C. N. S. & Randers, M. (2005). Computing the Quartet Distance between Trees of Arbitrary Degree. In Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 77-88)
Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 34(1), 23-37.
Besenbacher, S., Mailund, Westh-Nielsen, L. & Pedersen, C. N. S. (2005). RBT—A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.
Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Staerfeldt, HH., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, GK.-S., Yu, J., Wang, J., Bendixen, C. ... Bolund, L. (2005). Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing. BMC Genomics, 6(70). http://www.biomedcentral.com/1471-2164/6/70
Mailund, Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. BMC Bioinformatics, 7(29).
Hankeln, T., Ebner, B., Fuchs, C., Gerlach, F., Haberkamp, M., Laufs, T. L., Roesner, A., Schmidt, M., Weich, B., Wystub, S., Saaler-Reinhardt, S., Reuss, S., Bolognesi, M., De Sanctis, D., Marden, M. C., Kiger, L., Moens, L., Dewilde, S., Nevo, E. ... Burmester, T. (2005). Neuroglobin and cytoglobin in search of their role in the vertebrate globin family. Journal of Inorganic Biochemistry, 99, 110-119.
Herold, S. & Fago, A. (2005). Reactions of peroxynitrite with globin proteins and their possible physiological role. Comp. Biochem. Physiol., Part A., 142, 124-129.
Tengberg, A., Hall, P. O. J., Andersson, U., Lindén, B., Styrenius, O., Boland, G., de Bovee, F., Carlsson, B., Ceradini, S., Devol, A., Duivenveld, G., Friemann, J.-U., Glud, R. N., Khripounoff, A., Leather, J., Linke, P., Lund-Hansen, L. C., Rowe, G., Santschi, P. ... Witte, U. (2005). Intercalibration of benthic flux chambers. II. Hydrodynamic characterization and flux comparisons of 14 different designs. Mar. Chem., 94, 147-173.
Lundgren, R. & Olesen, J. M. (2005). The dense and highly connected world of Greenland plants and their pollinators. Arctic, Antarctic, and Alpine Research, 37, 514-520.
Møller, J. S. (2006). On the essential spectrum of the translation invariant Nelson model. In Mathematical Physics of Quantum Mechanics, Selected and Refereed Lectures from QMath9" (Lecture Notes in Physics Vol 690 ed., pp. 179-195). Springer.
Møller, J. S. (2000). Two-body short-range systems in a time-periodic electric field. Duke Mathematical Journal, 105, 135-166.
Nielsen, H. & Wistoft, B. (1998). Painting Technological Progress: P.S. Krøyer's The Industrialists (1904). Technology and Culture, 39(3), 408-433.
Nielsen, H., Nielsen, K., Petersen, F. & Jensen, H. S. (1998). Til samfundets tarv - Forskningscenter Risøs historie. Danmarks Tekniske Universitet, Risø Nationallaboratoriet for Bæredygtig Energi.
Nielsen, H., Petersen, F., Jensen, H. S. & Nielsen, K. (1999). Risø and the Attempts to Introduce Nuclear Power into Denmark. Centaurus (Copenhagen), 41, 64-92.
Nielsen, H. (2002). Exposing the Flaws in the Nobel facade. Physics World, 15(4), 46-47.
Nielsen, H. & Nielsen, K. (2000). Le porte de la gloire. Les Cahiers de Science & Vie, 38-42.
Nielsen, H., Nielsen, K., Petersen, F. & Jensen, H. S. (1998). Risø National research - Forty Years of Research in a Changing Society. Risø National laboratory.
Nielsen, H. & Clark, M. H. (1998). The Telegraphone. In E. D. Daniel, C. D. Mee & M. H. Clark (Eds.), Magnetic Recording: The First 100 Years (pp. 15-29). IEEE Press.
Nielsen, H. (1999). Telegrafonen - en opfindelse dømt til at mislykkes? Årbog for Danmarks Tekniske Museum, 6-25.
Nielsen, H. & Nielsen, K. (1999). The Danish Nobel Project. Newsletter of the Nobel Museum, 5-6.
Nielsen, H. (2005). Teknologi og samfund. In M. Hansen (Ed.), Almen Studieforberedelse - Videnskabernes temaer og historie (pp. 161-174). Gyldendal.
Nielsen, H., Nielsen, K. & Siggard Jensen, H. (2005). Skruen uden ende - Den vestlige teknologis historie. (3. ed.) Nyt Teknisk Forlag.
Jantzen, J. C. & Schwermer, J. (2005). Algebra. Springer.
Møller, J. S. (1993). Second quantization in a quon-algebra. J. Phys. A., 26, 4643-4652.
Herbst, I., Møller, J. S. & Skibsted, E. (1995). Spectral analysis of N-body Stark Hamiltonians. Communications in Mathematical Physics, 174, 261-294.
Herbst, I., Møller, J. S. & Skibsted, E. (1996). Asymptotic completeness for N-body Stark Hamiltonians. Communications in Mathematical Physics, 174, 509-535.
Brynskov, M. & Andersen, P. B. (2004). Habitats, Activities, and Signs. In J. Filipe & K. Liu (Eds.), Proceedings of The 7th International Workshop on Organisational Semiotics. (pp. 128-151). Institute for Systems and Technologies of Information, Control and Communication.
Arentoft, T., Bouzid, M. Y., Sterken, C., Freyhammer, L. M. & Frandsen, S. (2005). A dozen delta Scuti stars in the open cluster NGC 1817. PASP, 117(832), 601-614.
Andersen, L. W., Simonsen, V., Søgaard, B., Madsen, A. B., Pertoldi, C., Wind, P., Pihl, S., Fog, K. & Damgaard, C. F. (2005). Anvendelse af molekylærgenetiske markører i naturforvaltningen: Faglig rapport fra DMU, nr. 539.

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Schrøder, T. S. O., Gonçalves, F., Vollstädt, M. G. R., Zhang, T., Jensen, R. D., Tarazona-Tubens, F. L., Kim, S., Galetti, M., Simmons, B. I., Kaiser-Bunbury, C. N., Temeles, E. J. & Dalsgaard, B. (2024). Hurricane-induced pollinator shifts in a tightly coadapted plant–hummingbird mutualism. New Phytologist, 244(1), 16-20. https://doi.org/10.1111/nph.19938
He, F., Zarfl, C., Tockner, K., Olden, J. D., Campos, Z., Muniz, F., Svenning, J. C. & Jähnig, S. C. (2024). Hydropower impacts on riverine biodiversity. Nature Reviews Earth and Environment, 5(11), 755-772. https://doi.org/10.1038/s43017-024-00596-0
Acosta, A. C., Arias, C. A., Biller, P., Wittig, N. K., Baragau, I. A., Alhnidi, M. J., Ravenni, G., Sárossy, Z., Benedini, L., Abramiuc, L. E., Popescu, D. G., Negassa, W., Marulanda, V. F., Müller-Stöver, D. S. & Brix, H. (2024). Hydrothermal carbonization and pyrolysis in wetland engineering: Carbon sequestration, phosphorus recovery, and structural characterization of willow-based chars with X-ray μ-computed tomography. Chemical Engineering Journal, 492, Article 151916. https://doi.org/10.1016/j.cej.2024.151916
Søgaard, D. H., Niemi, A., Bluhm, B. A., Juul-Pedersen, T., Kohlbach, D., Reigstad, M. & Amiraux, R. (2024). Ice algae contributions to the benthos during a time of sea ice change: a review of supply, coupling, and fate. Frontiers in Environmental Science, 12(1432761), Article 1432761. https://doi.org/10.3389/fenvs.2024.1432761
Yi, G., Wang, B., Lu, S., Zhang, L., Liu, W., Chen, Z., Yang, L., Luo, X. & Wang, A. J. (2024). Identification and quantification of electron-generated atomic hydrogen through in-situ electron spin resonance and density functional theory. Chemical Engineering Journal, 483, Article 149226. https://doi.org/10.1016/j.cej.2024.149226
Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A. ... Farh, K. K. H. (2024). Identification of constrained sequence elements across 239 primate genomes. Nature, 625(7996), 735-742. https://doi.org/10.1038/s41586-023-06798-8
James, L. E., Bertelsen, M. F., Wang, T. & Williams, C. J. A. (2024). Impact of procedural handling on the physiological effects of alfaxalone anaesthesia in the ball python (Python regius). Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 297, Article 111704. https://doi.org/10.1016/j.cbpa.2024.111704
Nuñez, M. A., August, T., Bacher, S., Galil, B. S., Hulme, P. E., Ikeda, T., McGeoch, M. A., Ordonez, A., Rahlao, S., Truong, T. R., Pauchard, A., Roy, H. E., Sankaran, K. V., Schwindt, E., Seebens, H., Sheppard, A. W., Stoett, P., Vandvik, V. & Meyerson, L. A. (2024). Including a diverse set of voices to address biological invasions. Trends in Ecology and Evolution, 39(5), 409-412. https://doi.org/10.1016/j.tree.2024.02.009
Vogl, C., Karapetiants, M., Yıldırım, B., Kjartansdóttir, H., Kosiol, C., Bergman, J., Majka, M. & Mikula, L. C. (2024). Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed). BMC Bioinformatics, 25(1), Article 151. https://doi.org/10.1186/s12859-024-05751-4
Dechant, B., Kattge, J., Pavlick, R., Schneider, F. D., Sabatini, F. M., Moreno-Martínez, Á., Butler, E. E., van Bodegom, P. M., Vallicrosa, H., Kattenborn, T., Boonman, C. C. F., Madani, N., Wright, I. J., Dong, N., Feilhauer, H., Peñuelas, J., Sardans, J., Aguirre-Gutiérrez, J., Reich, P. B. ... Townsend, P. A. (2024). Intercomparison of global foliar trait maps reveals fundamental differences and limitations of upscaling approaches. Remote Sensing of Environment, 311, Article 114276. https://doi.org/10.1016/j.rse.2024.114276
Ji, Q. Q., Xie, Z., Wu, Y., Wan, Z., Xu, C., Wu, D., Chen, T. W. & Ordonez, A. (2024). Intraspecific trait variation of carrion beetle species and communities across elevations. Insect Conservation and Diversity, 17(6), 1113-1126. https://doi.org/10.1111/icad.12772
Digel, L. (2024). Investigation of Electron Conduction in Cable Bacteria. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Dalgaard, T., Butterbach-Bahl, K., Ambus, P., Normand, S., Hasler, B., Hutchings, N., Graversgaard, M., Thorsøe, M. H., Nielsen, H. O., Durand, P., Hansen, B., Skiba, U. M. & Sutton, M. A. (2024). Landscape Scale Guidance for Integrated Sustainable Nitrogen Management. 207. Abstract from The 9th International Nitrogen Conference, Delhi, India.
Mantoani, M. C., Guerra, L. C. C., Andrade, M. F., Dias, M. A. F. S., Dias, P. L. S., Rodrigues, F., Silva, D. M. C., Filho, V. B. D., Rudke, A. P., Martins, J. A., Martins, L. D., Torezan, J. M. D., Brancalion, P. H. S., Guillemot, J., Campoe, O. C., Phillips, V., Carotenuto, F., Šantl-Temkiv, T., Morris, C. E. & Gonçalves, F. L. T. (2024). Land-use patterns and fungal bioaerosols in the Brazilian Atlantic Forest biome. Discover Environment, 2(1), Article 19. https://doi.org/10.1007/s44274-024-00049-x
Lenoir, J., Svenning, J. C. & Sheffer, M. M. (2024). Latitudinal and Elevational Range Shifts Under Contemporary Climate Change. In Encyclopedia of Biodiversity: Volume 3 (3 ed., Vol. 3, pp. 690-709). Academic Press. https://doi.org/10.1016/B978-0-12-822562-2.00386-8
Mose Jørgensen, K.-E. (2024). Life history in a complex sea: Ichthyoplankton phenology in the Kattegat. [PhD dissertation, Aarhus University]. Aarhus University.
Rowan, J., Du, A., Lundgren, E. J., Faith, J. T., Beaudrot, L., Campisano, C. J., Joordens, J. C., Lazagabaster, I. A., Locke, E. M., Smail, I. E., Reed, K. E. & Kamilar, J. M. (2024). Long-term biotic homogenization in the East African Rift System over the last 6 million years of hominin evolution. Nature Ecology and Evolution, 8(9), 1751-1759. https://doi.org/10.1038/s41559-024-02462-0
Chen, S. C., Musat, F., Richnow, H. H. & Krüger, M. (2024). Microbial diversity and oil biodegradation potential of northern Barents Sea sediments. Journal of Environmental Sciences, 146, 283-297. https://doi.org/10.1016/j.jes.2023.12.010
Kemppinen, J., Lembrechts, J. J., Van Meerbeek, K., Carnicer, J., Chardon, N. I., Kardol, P., Lenoir, J., Liu, D., Maclean, I., Pergl, J., Saccone, P., Senior, R. A., Shen, T., Słowińska, S., Vandvik, V., von Oppen, J., Aalto, J., Ayalew, B., Bates, O. ... De Frenne, P. (2024). Microclimate, an important part of ecology and biogeography. Global Ecology and Biogeography, 33(6), Article e13834. https://doi.org/10.1111/geb.13834
Harðardóttir, S., Haile, J. S., Ray, J. L., Limoges, A., Van Nieuwenhove, N., Lalande, C., Grondin, P. L., Jackson, R., Skaar, K. S., Heikkilä, M., Berge, J., Lundholm, N., Massé, G., Rysgaard, S., Seidenkrantz, M. S., De Schepper, S., Lorenzen, E. D., Lovejoy, C. & Ribeiro, S. (2024). Millennial-scale variations in Arctic sea ice are recorded in sedimentary ancient DNA of the microalga Polarella glacialis. Communications Earth & Environment, 5, Article 25. https://doi.org/10.1038/s43247-023-01179-5
Aaskov, M. L., Ishimatsu, A., Nyengaard, J. R., Malte, H., Lauridsen, H., Ha, N. T. K., Do Thi, T. H. & Bayley, M. (2024). Modulation of gill surface area does not correlate with oxygen loss in Chitala ornata. Proceedings of the Royal Society B: Biological Sciences, 291(2033), Article 20241884. https://doi.org/10.1098/rspb.2024.1884
Ejaz, U., Khan, S. M., Jehangir, S., Ahmad, Z., Abdullah, A., Iqbal, M., Khalid, N., Nazir, A. & Svenning, J. C. (2024). Monitoring the Industrial waste polluted stream - Integrated analytics and machine learning for water quality index assessment. Journal of Cleaner Production, 450, Article 141877. https://doi.org/10.1016/j.jclepro.2024.141877