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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Rocha, R. V. M., Libório, P. P., Kupwade Patil, H. & Aranha, D. F. (2021). A Differentially Private Hybrid Approach to Traffic Monitoring. In K. Sako & N. O. Tippenhauer (Eds.), Applied Cryptography and Network Security - ACNS 2021 (pp. 233-256). Springer. https://doi.org/10.1007/978-3-030-78375-4_10
Zhu, F., Zhang, Z. & Qu, Q. (2013). A direct mining approach to efficient constrained graph pattern discovery. Association for Computing Machinery. Special Interest Group on Management of Data. International Conference Proceedings, 821-832. https://doi.org/10.1145/2463676.2463723
Li, Z., Yang, Y., Chen, X., He, Y., Bolan, N., Rinklebe, J., Lam, S. S., Peng, W. & Sonne, C. (2023). A discussion of microplastics in soil and risks for ecosystems and food chains. Chemosphere, 313, Article 137637. https://doi.org/10.1016/j.chemosphere.2022.137637
Daniel, C., Venø, M. T., Ekdahl, Y., Kjems, J. & Öhman, M. (2012). A distant cis acting intronic element induces site-selective RNA editing. Nucleic Acids Research, 40(19), 9876-9886. https://doi.org/10.1093/nar/gks691
Gaulme, P., Rowe, J. F., Bedding, T. R., Benomar, O., Corsaro, E., Davies, G. R., Hale, S. J., Howe, R., Garcia, R. A., Huber, D., Jimenez, A., Mathur, S., Mosser, B., Appourchaux, T., Boumier, P., Jackiewicz, J., Leibacher, J., Schmider, F. .-X., Hammel, H. B. ... Aguirre, V. S. (2016). A DISTANT MIRROR: SOLAR OSCILLATIONS OBSERVED ON NEPTUNE BY THE KEPLER K2 MISSION. The Astrophysical Journal Letters, 833(1), Article 13. https://doi.org/10.3847/2041-8213/833/1/L13
Skyum, S. (1988). A Distributed Election and Spanning Tree Algorithm Based on Depth First Search. Paper presented at Symposium on Mathematics of Computation. ICOMIDC, Ho Chi Minh City, Viet Nam.
Skyum, S. (1987). A Distributed Election and Spanning Tree Algorithm Based on Depth First Search Traversals. Department of Computer Science, Aarhus University. Daimi Report Series (DAIMI PB) No. 232
Johansen, K. E., Jørgensen, U. L., Nielsen, S. H., Nielsen, S. E. & Skyum, S. (1988). A distributed spanning tree algorithm. In J. van Leeuwen (Ed.), Distributed Algorithms: 2nd International Workshop Amsterdam, The Netherlands, July 8–10, 1987 Proceedings (pp. 1-12). Springer. https://doi.org/10.1007/BFb0019790
Johansen, K. E., Jørgensen, U. L., Nielsen, S. H., Nielsen, S. E. & Skyum, S. (1987). A Distributed Spanning Tree Algorithm. Department of Computer Science, Aarhus University. Daimi Report Series (DAIMI PB) No. 226
Vesterstrøm, J. S. & Riget, J. (2002). A Diversity-Guided Particle Swarm Optimizer - the ARPSO. EVALife Technical Report, (2002-02).
Van Oosterhout, A., Hoggan, E. & Bruns, M. (2022). Adjustable Graphical Notation and Accessible Hardware to Accommodate the Force Feedback Design Process Redesign of Feelix based on Preliminary Evaluations of Design Tools and Methods. In Participative Computing for Sustainable Futures : Adjunct Proceedings of the 12th Nordic Conference on Human-Computer Interaction (NordiCHI’22) Article 52 Association for Computing Machinery. https://doi.org/10.1145/3547522.3547683
Barndorff-Nielsen, O. E. (1994). Adjusted versions of profile likelihood and directed likelihood, and extended likelihood. Journal of the Royal Statistical Society, Series B (Statistical Methodology), 56(1), 125-140.
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018). Adjusting for Macro-Environmental Sensitivity in Growth rate of Danish Landrace and Duroc Pigs. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
He, Y., Zhang, P., Hou, X., Xu, J., Wang, M., Wu, Y., Qu, J. & Dong, MD. (2014). Adjusting the electronic properties of silicon carbide nanoribbons by introducing edge functionalization. R S C Advances, 4(66), 35042-35047. https://doi.org/10.1039/c4ra04351k
Chu, C. T., Oury, T. D., Enghild, J. J. & Pizzo, S. V. (1994). Adjuvant-free in vivo targeting. Antigen delivery by alpha 2-macroglobulin enhances antibody formation. Journal of Immunology, 152(4), 1538-45.
Ortega, A., Geraldi, N. R., Díaz-Rúa, R., Ørberg, S. B., Wesselmann, M., Krause-Jensen, D. & Duarte, C. M. (2020). A DNA Mini-Barcode for Marine Macrophytes. Molecular Ecology Resources, 20(4), 920-935. https://doi.org/10.1111/1755-0998.13164
Löffler, P. M. G., Ries, O., Rabe, A., Okholm, A. H., Thomsen, R. P., Kjems, J. & Vogel, S. (2017). A DNA-programmed liposome fusion cascade. Angewandte Chemie International Edition, 56(43), 13228–13231. https://doi.org/10.1002/anie.201703243
Liu, M., Fu, J., Hejesen, C., Yang, Y., Woodbury, N. W., Gothelf, K., Liu, Y. & Yan, H. (2013). A DNA tweezer-actuated enzyme nanoreactor. Nature Communications, 4, Article 2127. https://doi.org/10.1038/ncomms3127
Schwartzbach, M. I. & Klarlund, N. (1999). A Domain-Specific Language for Regular Sets of Strings and Trees. I E E E Transactions on Software Engineering, (3), 378-386. https://doi.org/10.1109/32.798326
Schwartzbach, M. I. & Klarlund, N. (1997). A Domain-Specific Language for Regular Sets of Strings and Trees. In Proceedings of the Conference on Domain-Specific Languages
Schwartzbach, M. I. & Klarlund, N. (1999). A Domain-Specific Languane for Regular Sets of Strings and Trees. I E E E Transactions on Software Engineering, 25(3), 378-386. https://doi.org/10.1109/32.798326
Nielsen, J. D. & Schwartzbach, M. I. (2007). A Domain-Specific Programming Language for Secure Multiparty Computation. In Preceedings of the 2007 ACM SIGPLAN Workshop on Programming Languages and Analysis for Security (pp. 21-31). Society for Industrial and Applied Mathematics. https://doi.org/10.1145/1255329.1255333
Andersen, S. K., Bhattacharya, P. K., Golovchenko, J., Hertel, N. & Mair, G. (1979). A double-crystal x-ray spectrometer stabilized by a dynamic feedback system. J. Phys. E: Scientific Instruments, 12, 1063-1066.

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Joyce, W., Miller, T. E., Elsey, R. M., Wang, T. & Crossley, D. A. (2018). The effects of embryonic hypoxic programming on cardiovascular function and autonomic regulation in the American alligator (Alligator mississippiensis) at rest and during swimming. Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology, 188(6), 967-976. https://doi.org/10.1007/s00360-018-1181-2
Le Thi Hong Gam, Jensen, F. B., Do Thi Thanh Huong, Nguyen Thanh Phuong & Bayley, M. (2018). The effects of elevated environmental CO2 on nitrite uptake in the air-breathing clown knifefish, Chitala ornata. Aquatic Toxicology, 196, 124-131. https://doi.org/10.1016/j.aquatox.2018.01.011
Dudele, A., Østergaard, R., Wang, T. & Malte, H. (2012). The effects of dietary protein on energy expenditure in female C57BL/6JBom mice. Poster session presented at Scandinavian Physiological Society Annual Meeting, Helsinki, Denmark.
Jew, C. J., Thomsen, M., Bayley, M. & Hicks, J. W. (2016). The effects of aquatic hypercapnia on air-breathing fishes. Abstract from Experimental Biology, San Diego.
Jew, C., Thomsen, M., Bayley, M. & Hicks, J. (2017). The effects of aquatic hypercanpia on air-breathing fishes. Integrative and Comparative Biology, 57(suppl 1), E304. https://doi.org/10.1093/icb/icx001
de Oliveira, M. G., Castro, S. A., Campos, R., Vivi, G., Leite, C. A. C., De Nucci, G., Wang, T. & Filogonio, R. (2026). The effects of 6-nitrodopamine on the systemic vasculature of South American rattlesnakes. The Journal of experimental biology, 229(4), 1-11. https://doi.org/10.1242/jeb.251103
Nielsen, U. N., Riis, T. & Brix, H. (2006). The effect of weed cutting on Luronium natans. Aquatic Conservation, 16, 409-417.
Capek, P., Diakova, K., Dickopp, JE., Barta, J., Wild, B., Schnecker, J., Aiglsdorfer, S., Guggenberger, G., Gentsch, N., Hugelius, G., Kuhry, P., Lashchinsky, N., Gittel, A., Schleper, C., Mikutta, R., Palmtag, J., Shibistova, O., Urich, T., Urich, T. ... Santruckova, H. (2015). The effect of warming on the vulnerability of subducted organic carbon in arctic soils. Soil Biology & Biochemistry, 90, 19-29. https://doi.org/10.1016/j.soilbio.2015.07.013
Schierup, M. H., Vekemans, X. & Charlesworth, D. (2000). The effect of subdivision on variation at multi-allelic loci under balancing selection. Genetics Research, 76(1), 51-62.
Gagniere, P. A., Normandeau, E., Côté, C., Hansen, M. M. & Bernatchez, L. (2012). The effect of spatially varying selection on locally adaptive alleles in the panmictic American eel (Anguilla rostrata). Genetics, 190, 725-736.
Mikkelsen, L., Hermannsen, L. & Tougaard, J. (2017). The effect of simulated seal scarer sounds on seals. Aarhus University, DCE - Danish Centre for Environment and Energy. Technical Report from DCE - Danish Centre for Environment and Energy Vol. 108 http://dce2.au.dk/pub/TR108.pdf
Hermannsen, L., Mikkelsen, L. & Tougaard, J. (2017). The effect of simulated seal scarer sounds on harbor porpoises. Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy Vol. 247 http://dce2.au.dk/pub/SR247.pdf
Ern, R., Cong, N., Houng, D., Overton, J., Wang, T. & Bayley, M. (2008). The effect of salinity on resting metabolism in Eurasian perch (Perca fluviathlis L.). Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 150(3), S110. https://doi.org/10.1016/j.cbpa.2008.04.239
Sales, L. P., Galetti, M., Carnaval, A., Monsarrat, S., Svenning, J. C. & Pires, M. M. (2022). The effect of past defaunation on ranges, niches, and future biodiversity forecasts. Global Change Biology, 28(11), 3683-3693. https://doi.org/10.1111/gcb.16145
Iversen, N. K., McKenzie, D., Malte, H. & Wang, T. (2008). The effect of hypoxic bradycardia on the oxygen consumption by the European eel (Anguilla anguilla). Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, (3), 122.
Wang, T., Lefevre, S., Huong, D. T. T., Cong, N. V. & Bayley, M. (2009). The effect of Hypoxia on growth and digestion. In J. G. Richards, A. P. Farrell & C. J. Brauner (Eds.), Fish Physiology (Vol. 27, pp. 361-396). Academic Press. https://doi.org/10.1016/S1546-5098(08)00008-3
Schierup, M. H., Charlesworth, D. & Vekemans, X. (2000). The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population. Genetics Research, 76(1), 63-73.
Amstrup, A. B., Kovac, H., Käfer, H., Stabentheiner, A. & Sørensen, J. G. (2025). The effect of heat stress on paper wasps from different climates. Journal of Thermal Biology, 132, 104188. Article 104188. https://doi.org/10.1016/j.jtherbio.2025.104188