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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Liu, M., Fu, J., Hejesen, C., Yang, Y., Woodbury, N. W., Gothelf, K., Liu, Y. & Yan, H. (2013). A DNA tweezer-actuated enzyme nanoreactor. Nature Communications, 4, Article 2127. https://doi.org/10.1038/ncomms3127
Schwartzbach, M. I. & Klarlund, N. (1999). A Domain-Specific Language for Regular Sets of Strings and Trees. I E E E Transactions on Software Engineering, (3), 378-386. https://doi.org/10.1109/32.798326
Schwartzbach, M. I. & Klarlund, N. (1997). A Domain-Specific Language for Regular Sets of Strings and Trees. In Proceedings of the Conference on Domain-Specific Languages
Schwartzbach, M. I. & Klarlund, N. (1999). A Domain-Specific Languane for Regular Sets of Strings and Trees. I E E E Transactions on Software Engineering, 25(3), 378-386. https://doi.org/10.1109/32.798326
Nielsen, J. D. & Schwartzbach, M. I. (2007). A Domain-Specific Programming Language for Secure Multiparty Computation. In Preceedings of the 2007 ACM SIGPLAN Workshop on Programming Languages and Analysis for Security (pp. 21-31). Society for Industrial and Applied Mathematics. https://doi.org/10.1145/1255329.1255333
Andersen, S. K., Bhattacharya, P. K., Golovchenko, J., Hertel, N. & Mair, G. (1979). A double-crystal x-ray spectrometer stabilized by a dynamic feedback system. J. Phys. E: Scientific Instruments, 12, 1063-1066.
Arentoft, T., Bouzid, M. Y., Sterken, C., Freyhammer, L. M. & Frandsen, S. (2005). A dozen delta Scuti stars in the open cluster NGC 1817. PASP, 117(832), 601-614.
Byrne, S., Armstead, I., Swain, S. C., Panitz, F., Bendixen, C., Hedegaard, J., Nagy, I., Farrell, J. D., Studer, B., Asp, T. & Cassamo, M. (2014). A Draft Sequence Assembly of the Perennial Ryegrass (Lolium perenne) Genome. In Proceeding of Plant & Animal Genome XXII: The International Conference on the Status of Plant & Animal Genome Research (pp. 161-161).
Joyce, W., Egginton, S., Farrell, A. P. & Axelsson, M. (2019). Adrenergic and adenosinergic regulation of the cardiovascular system in an Antarctic icefish: Insight into central and peripheral determinants of cardiac output. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 230, 28-38. https://doi.org/10.1016/j.cbpa.2018.12.012
Kolínský, P., Meier, T., Agius, M. R., Bijedić, A., Bokelmann, G., Borleanu, F., Brnović, D., Cambaz, M. D., Cammarano, F., Čarman, M., Cauzzi, C., Chernih, D., Csicsay, K., Amulić, S. C., Czuba, W., Diaz, J., Dimitrova, L., Dushi, E., Evangelidis, C. P. ... Čarman, M. (2025). AdriaArray – a Passive Seismic Experiment to Study Structure, Geodynamics and Geohazards of the Adriatic Plate. Annals of Geophysics, 68(5 Special Issue), Article DM555. https://doi.org/10.4401/ag-9284
Alessandrini, D. & Li, Q. (2017). AdS 3-manifolds and Higgs bundles. Proceedings of the American Mathematical Society, 146(2), 845-860. https://doi.org/10.1090/proc/13586
Marcinkowski, M. D., Adamsen, K. C., Doudin, N., Sharp, M. A., Smith, R. S., Wang, Y., Wendt, S., Lauritsen, J. V., Parkinson, G. S., Kay, B. D. & Dohnálek, Z. (2020). Adsorption and reaction of methanol on Fe3O4(001). Journal of Chemical Physics, 152(6), Article 064703. https://doi.org/10.1063/1.5139418
Britz, D. & Bauer, H. H. (1968). Adsorption and reduction of m-nitrophenol at the dropping mercury electrode. Electrochimica Acta, 13, 347-359.
Henderson, Z., Cole, J., Thomas, A. G., Jones, R. G., Wagstaffe, M., Avila, J., Asensio, M. C., Li, Z. & Syres, K. L. (2025). Adsorption and Thermal Stability of Ionic Liquid Multilayers on ZnO Surfaces. Surfaces, 8(2), Article 29. https://doi.org/10.3390/surfaces8020029
Britz, D., Shallal, A. K. & Bauer, H. H. (1971). Adsorption at electrodes: isotherm parameters for alkyl alcohols in various electrolytes. Collection of Czechoslovak Chemical Communications, 36, 767-780.
Schunack, M., Rosei, F., Naitoh, Y., Jiang, P., Gourdon, A., Lægsgaard, E., Stensgaard, I., Joachim, C. & Besenbacher, F. (2002). Adsorption behavior of Lander molecules on Cu(110) studied by scanning tunneling microscopy. Journal of Chemical Physics, 117, 6259-6265.
Thostrup, P., Christoffersen, E., Lorensen, H. T., Jacobsen, K. W., Besenbacher, F. & Nørskov, J. K. (2001). Adsorption-induced step formation. Physical Review Letters, 87, 126102.
Cassidy, A., Tsud, N., Bercha, S., Feyer, V., Prince, K. C. & Plekan, O. (2019). Adsorption of 5-Fluorouracil on Au(111) and Cu(111) surfaces. AIP Advances, 9(8), Article 5108801. https://doi.org/10.1063/1.5108801
Onsgaard, J., Hoffmann, S. V., Møller, P., Godowski, P. J., Wagner, J. B., Paolucci, G., Baraldi, A., Comelli, G. & Groso, A. (2003). Adsorption of CO2and Coadsorption of H and CO2 on Potassium-Promoted Cu(115). ChemPhysChem, 4, 466-473.
Head, A. R., Tsyshevsky, R., Trotochaud, L., Yu, Y., Hansen, L. K., Karslioglu, O., Kuklja, M. M. & Bluhm, H. (2016). Adsorption of Dimethyl Methylphosphonate on MoO3: The Role of Oxygen Vacancies. The Journal of Physical Chemistry Part C, 120(51), 29077-29088. https://doi.org/10.1021/acs.jpcc.6b07340
Kühnle, A., Vollmer, S., Linderoth, T. R., Witte, G., Wöll, C. & Besenbacher, F. (2002). Adsorption of dodecanethiol on Cu(110): Structural ordering upon thiolate formation. Langmuir, 18, 5558-5565.
Feyer, V., Plekan, O., Prince, K. C., Ptasińska, S., Iakhnenko, M. & Tsud, N. (2012). Adsorption of histidine and a histidine tripeptide on Au(111) and Au(110) from acidic solution. The Journal of Physical Chemistry Part C, 116(43), 22960-22966. https://doi.org/10.1021/jp307463z
Thomsen, L., Onsgaard, J., Godowski, P. J., Møller, P. & Hoffmann, S. V. (2001). Adsorption of hydrogen on clean and potassium modified low index copper surfaces: Cu(100) and Cu(110). J. Vac. Sci. Technol. A., 19, 1988-1992.
Jørgensen, L., Bennedsen, P., Hoffmann, S. V., Krogh, R. L., Pinholt, C., Groenning, M., Hostrup, S. & Bukrinsky, J. T. (2011). Adsorption of insulin with varying self-association profiles to a solid Teflon surface—Influence on protein structure, fibrillation tendency and thermal stability. European Journal of Pharmaceutical Sciences, 42(5), 509-516. https://doi.org/10.1016/j.ejps.2011.02.007
Okhrimenko, D. V., Lakshtanov, L. Z., Olsson, M. H. M., Ceccato, M., Dalby, K. N., Rodriguez-Blanco, J. D., Andersson, M. P. & Stipp, S. L. S. (2021). Adsorption of nitrogen heterocyclic compounds (NHC) on soil minerals: Quinoline as an example. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 611, Article 125899. https://doi.org/10.1016/j.colsurfa.2020.125899
Kingshott, P. & Hoecker, H. (2007). Adsorption of proteins: Assessment methods. In P. Somasundaran (Ed.), Encyclopedia of Surface and Colloid Science (2. ed., Vol. 5, pp. 669-694). Taylor & Francis.

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Iversen, N. K., McKenzie, D., Malte, H. & Wang, T. (2008). The effect of hypoxic bradycardia on the oxygen consumption by the European eel (Anguilla anguilla). Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, (3), 122.
Wang, T., Lefevre, S., Huong, D. T. T., Cong, N. V. & Bayley, M. (2009). The effect of Hypoxia on growth and digestion. In J. G. Richards, A. P. Farrell & C. J. Brauner (Eds.), Fish Physiology (Vol. 27, pp. 361-396). Academic Press. https://doi.org/10.1016/S1546-5098(08)00008-3
Schierup, M. H., Charlesworth, D. & Vekemans, X. (2000). The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population. Genetics Research, 76(1), 63-73.
Amstrup, A. B., Kovac, H., Käfer, H., Stabentheiner, A. & Sørensen, J. G. (2025). The effect of heat stress on paper wasps from different climates. Journal of Thermal Biology, 132, 104188. Article 104188. https://doi.org/10.1016/j.jtherbio.2025.104188
Xiao, X., Jorge, L. R. É., Volf, M., Moos, M., Gélin, U., Finnie, S., Freiberga, I., Jancuchova-Laskova, J., Weiss, M., Novotny, V. & Sam, K. (2024). The effect of drought-induced leaf traits on Ficus leaf palatability is species specific. Ecosphere, 15(5), Article e4831. https://doi.org/10.1002/ecs2.4831
Mathes, G. H., Pimiento, C., Kiessling, W., Svenning, J. C. & Steinbauer, M. J. (2025). The effect of climate legacies on extinction dynamics: A systematic review. Cambridge Prisms: Extinction, 3, Article e6. https://doi.org/10.1017/ext.2025.2
Schlafer, S., K. Johnsen, K., Jørgensen, M.-R., Kjærbølling, I., Schramm, A. & Meyer, R. L. (2023). The effect of an enzyme-containing lozenge on dental biofilm accumulation: A clinical pilot study. Abstract from ORCA: 70th Congress of the European Organization for Caries Research, Egmond aan Zee, Netherlands.
Ozolina, K., Overgaard, J. & Wang, T. (2010). The effect of acclimation on the aerobic scope of Rhinella marina. Poster session presented at Society for Experimental Biology: Annual main meeting, Prag, Czech Republic.
Bataillon, T., Mailund, T., Thorlacius, S., Steingrimsson, E., Rafnar, T., Halldorsson, M., Calian, V. & Schierup, M. H. (2006). The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. European Journal of Human Genetics, 14, 1044–1053. https://doi.org/10.1038/sj.ejhg.5201669
Howard, R. J., Giacomelli, M., Lozano-Fernandez, J., Edgecombe, G. D., Fleming, J. F., Kristensen, R. M., Ma, X., Olesen, J., Sørensen, M. V., Thomsen, P. F., Wills, M. A., Donoghue, P. C. J. & Pisani, D. (2022). The Ediacaran origin of Ecdysozoa: integrating fossil and phylogenomic data. Journal of the Geological Society, 179(4), Article jgs2021-107. https://doi.org/10.1144/jgs2021-107
Borgtoft Pedersen, H. & Balslev, H. (1992). The Economic Botany of Ecuadorean palms. In in M. Plotkin & L. Famolare (eds.), Sustainable Harvest and marketing of Rain Forest Products. Island Press, Washington D.C. (pp. 173-191). Island Press, Washington D.C..
Somaweera, R., Nifong, J., Rosenblatt, A., Brien, M. L., Combrink, X., Elsey, R. M., Grigg, G., Magnusson, W. E., Mazzotti, F. J., Pearcy, A., Platt, S. G., Shirley, M. H., Tellez, M., van der Ploeg, J., Webb, G., Whitaker, R. & Webber, B. L. (2020). The ecological importance of crocodylians: towards evidence-based justification for their conservation. Biological Reviews, 95(4), 936-959. https://doi.org/10.1111/brv.12594
Jordano, P., Bascompte, J. & Olesen, J. M. (2006). The Ecological Consequences of Complex Topology and Nested Structure in Pollination Webs. In N. M. Waser & J. Ollerton (Eds.), Plant-Pollinator Interactions: From Specialization to Generalization (pp. 173-199). Chicago Univ. Press.
Olesen, J. M. (2006). The ecological consequences of complex topology and nested structure in pollination webs. In N. M. Waser & J. Ollerton (Eds.), Plant-pollinator interactions: From specialization to generalization (pp. 173-199). University of Chicago Press.
Horn, M. A., Schramm, A. & Drake, H. L. (2003). The earthworm gut: An ideal habitat for ingested N2O-producing microorganisms. Applied and Environmental Microbiology, 69(3), 1662-1669. https://doi.org/10.1128/AEM.69.3.1662-1669.2003
Šímová, I., Ordonez, A. & Storch, D. (2023). The dynamics of the diversity–energy relationship during the last 21,000 years. Global Ecology and Biogeography, 32(5), 707-718. https://doi.org/10.1111/geb.13649
Jensen, K. E. (2015). The drivers of plant diversity: a "big data" approach. Aarhus University, Science and Technology.
Funch, P., Cong, N. V., Intanai, I., Bussarawit, S., Nielsen, T., Wang, T., Faurby, S. & Obst, M. (2008).  The diversity of horseshoe crabs - protecting an endangered resource. Poster session presented at International Conference on Marine Organisms and their Biomedical Potentials: Expectations and Realizations, Terengganu, Malaysia.
Brix, H. & Lyngby, J. E. (1982). The distribution of cadmium, copper, lead nd zinc in eelgrass (Zostera marina L.). Science of the Total Environment, 24, 51-63.
Wallace, M. A., Coffman, K. A., Gilbert, C., Ravindran, S., Albery, G. F., Abbott, J., Argyridou, E., Bellosta, P., Betancourt, A. J., Colinet, H., Eric, K., Glaser-Schmitt, A., Grath, S., Jelic, M., Kankare, M., Kozeretska, I., Loeschcke, V., Montchamp-Moreau, C., Ometto, L. ... Obbard, D. J. (2021). The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe. Virus Evolution, 7(1), Article veab031. https://doi.org/10.1093/ve/veab031
Radchuk, V., Laender, F. D., Cabral, J. S., Boulangeat, I., Crawford, M., Bohn, F., Raedt, J. D., Scherer, C., Svenning, J. C., Thonicke, K., Schurr, F. M., Grimm, V. & Kramer-Schadt, S. (2019). The dimensionality of stability depends on disturbance type. Ecology Letters, 22(4), 674-684. https://doi.org/10.1111/ele.13226
JØRGENSEN, BB. & MARAIS, DJD. (1990). The Diffusive Boundary-Layer of Sediments - Oxygen Microgradients Over a Microbial Mat. Limnology and Oceanography, 35(6), 1343-1355.
Lundgren, R. & Olesen, J. M. (2005). The dense and highly connected world of Greenland plants and their pollinators. Arctic, Antarctic, and Alpine Research, 37, 514-520.
Helmstetter, A. J., Cable, S., Rakotonasolo, F., Rabarijaona, R., Rakotoarinivo, M., Eiserhardt, W. L., Baker, W. J. & Papadopulos, A. S. T. (2021). The demographic history of Madagascan micro-endemics: have rare species always been rare? Proceedings of the Royal Society B: Biological Sciences, 288(1959), Article 20210957. https://doi.org/10.1098/rspb.2021.0957
Kopf, A., Camerlenghi, A., Canals, M., Ferdelman, T., Mevel, C., Pälike, H., Roest, W., Ask, M., Jørgensen, B. B., Boetius, A., De Santis, A., Früh-Green, G., Lykousis, V., McKenzie, J., Meinert, J., Parkes, J., Schneider, R. & Weaver, P. (2012). The deep sea and sub-seafloor frontier.