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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kristensen, L. M. & Mailund (2003). Efficient Path Finding with the Sweep-Line Method using External Storage. In Proceedings of International Conference on Formal Engineering Methods (ICFEM 2003) (pp. 319-337)
Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)
Mailund, Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)
Christiansen, C., Mailund, Pedersen, C. N. S. & Randers, M. (2005). Quartet Distance between General Trees. In Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM) (pp. 796-799)
Christiansen, C., Mailund, Pedersen, C. N. S. & Randers, M. (2005). Computing the Quartet Distance between Trees of Arbitrary Degree. In Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 77-88)
Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 34(1), 23-37.
Besenbacher, S., Mailund, Westh-Nielsen, L. & Pedersen, C. N. S. (2005). RBT—A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.
Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Staerfeldt, HH., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, GK.-S., Yu, J., Wang, J., Bendixen, C. ... Bolund, L. (2005). Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing. BMC Genomics, 6(70). http://www.biomedcentral.com/1471-2164/6/70
Mailund, Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. BMC Bioinformatics, 7(29).
Hankeln, T., Ebner, B., Fuchs, C., Gerlach, F., Haberkamp, M., Laufs, T. L., Roesner, A., Schmidt, M., Weich, B., Wystub, S., Saaler-Reinhardt, S., Reuss, S., Bolognesi, M., De Sanctis, D., Marden, M. C., Kiger, L., Moens, L., Dewilde, S., Nevo, E. ... Burmester, T. (2005). Neuroglobin and cytoglobin in search of their role in the vertebrate globin family. Journal of Inorganic Biochemistry, 99, 110-119.
Herold, S. & Fago, A. (2005). Reactions of peroxynitrite with globin proteins and their possible physiological role. Comp. Biochem. Physiol., Part A., 142, 124-129.
Tengberg, A., Hall, P. O. J., Andersson, U., Lindén, B., Styrenius, O., Boland, G., de Bovee, F., Carlsson, B., Ceradini, S., Devol, A., Duivenveld, G., Friemann, J.-U., Glud, R. N., Khripounoff, A., Leather, J., Linke, P., Lund-Hansen, L. C., Rowe, G., Santschi, P. ... Witte, U. (2005). Intercalibration of benthic flux chambers. II. Hydrodynamic characterization and flux comparisons of 14 different designs. Mar. Chem., 94, 147-173.
Lundgren, R. & Olesen, J. M. (2005). The dense and highly connected world of Greenland plants and their pollinators. Arctic, Antarctic, and Alpine Research, 37, 514-520.
Møller, J. S. (2006). On the essential spectrum of the translation invariant Nelson model. In Mathematical Physics of Quantum Mechanics, Selected and Refereed Lectures from QMath9" (Lecture Notes in Physics Vol 690 ed., pp. 179-195). Springer.
Nielsen, H. & Wistoft, B. (1998). Painting Technological Progress: P.S. Krøyer's The Industrialists (1904). Technology and Culture, 39(3), 408-433.
Nielsen, H., Nielsen, K., Petersen, F. & Jensen, H. S. (1998). Til samfundets tarv - Forskningscenter Risøs historie. Danmarks Tekniske Universitet, Risø Nationallaboratoriet for Bæredygtig Energi.
Nielsen, H., Petersen, F., Jensen, H. S. & Nielsen, K. (1999). Risø and the Attempts to Introduce Nuclear Power into Denmark. Centaurus (Copenhagen), 41, 64-92.
Nielsen, H. (2002). Exposing the Flaws in the Nobel facade. Physics World, 15(4), 46-47.
Nielsen, H. & Nielsen, K. (2000). Le porte de la gloire. Les Cahiers de Science & Vie, 38-42.
Nielsen, H., Nielsen, K., Petersen, F. & Jensen, H. S. (1998). Risø National research - Forty Years of Research in a Changing Society. Risø National laboratory.
Nielsen, H. & Clark, M. H. (1998). The Telegraphone. In E. D. Daniel, C. D. Mee & M. H. Clark (Eds.), Magnetic Recording: The First 100 Years (pp. 15-29). IEEE Press.
Nielsen, H. (1999). Telegrafonen - en opfindelse dømt til at mislykkes? Årbog for Danmarks Tekniske Museum, 6-25.
Nielsen, H. & Nielsen, K. (1999). The Danish Nobel Project. Newsletter of the Nobel Museum, 5-6.
Nielsen, H. (2005). Teknologi og samfund. In M. Hansen (Ed.), Almen Studieforberedelse - Videnskabernes temaer og historie (pp. 161-174). Gyldendal.
Nielsen, H., Nielsen, K. & Siggard Jensen, H. (2005). Skruen uden ende - Den vestlige teknologis historie. (3. ed.) Nyt Teknisk Forlag.
Jantzen, J. C. & Schwermer, J. (2005). Algebra. Springer.
Møller, J. S. (1993). Second quantization in a quon-algebra. J. Phys. A., 26, 4643-4652.
Herbst, I., Møller, J. S. & Skibsted, E. (1995). Spectral analysis of N-body Stark Hamiltonians. Communications in Mathematical Physics, 174, 261-294.
Herbst, I., Møller, J. S. & Skibsted, E. (1996). Asymptotic completeness for N-body Stark Hamiltonians. Communications in Mathematical Physics, 174, 509-535.
Brynskov, M. & Andersen, P. B. (2004). Habitats, Activities, and Signs. In J. Filipe & K. Liu (Eds.), Proceedings of The 7th International Workshop on Organisational Semiotics. (pp. 128-151). Institute for Systems and Technologies of Information, Control and Communication.
Arentoft, T., Bouzid, M. Y., Sterken, C., Freyhammer, L. M. & Frandsen, S. (2005). A dozen delta Scuti stars in the open cluster NGC 1817. PASP, 117(832), 601-614.
Andersen, L. W., Simonsen, V., Søgaard, B., Madsen, A. B., Pertoldi, C., Wind, P., Pihl, S., Fog, K. & Damgaard, C. F. (2005). Anvendelse af molekylærgenetiske markører i naturforvaltningen: Faglig rapport fra DMU, nr. 539.

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Takahashi, K., Lee, Y., Fago, A., Bautista, N. M., Storz, J. F., Kawamoto, A., Kurisu, G., Nishizawa, T. & Tame, J. R. H. (2024). The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM. Nature Communications, 15(1), Article 6505. https://doi.org/10.1038/s41467-024-49947-x
Ewers, R. M., Orme, C. D. L., Pearse, W. D., Zulkifli, N., Yvon-Durocher, G., Yusah, K. M., Yoh, N., Yeo, D. C. J., Wong, A., Williamson, J., Wilkinson, C. L., Wiederkehr, F., Webber, B. L., Wearn, O. R., Wai, L., Vollans, M., Twining, J. P., Turner, E. C., Tobias, J. A. ... Banks-Leite, C. (2024). Thresholds for adding degraded tropical forest to the conservation estate. Nature, 631(8022), 808-813. https://doi.org/10.1038/s41586-024-07657-w
Massier, L., Musat, N., Stumvoll, M., Tremaroli, V., Chakaroun, R. & Kovacs, P. (2024). Tissue-resident bacteria in metabolic diseases: emerging evidence and challenges. Nature Metabolism, 6(7), 1209-1224. https://doi.org/10.1038/s42255-024-01065-0
Maliniemi, T., Tukiainen, H., Hjort, J., Toivanen, M., Vernham, G., Bailey, J. J., Baines, O., Benniston, L., Brilha, J., Field, R., Fox, N., Gray, M., Grytnes, J. A., Huusko, K., Kemppinen, J., Pereira, P., Salminen, H., Schrodt, F., Turner, L. & Alahuhta, J. (2024). Too much diversity—Multiple definitions of geodiversity hinder its potential in biodiversity research. Diversity and Distributions, 30(6), Article e13843. https://doi.org/10.1111/ddi.13843
Yin, M., Zhang, X., Zhu, H., Sheng, W., Wu, Y., Jiang, D., Wen, Q., Shao, H., Guo, Y., Wang, C., Ma, L., Yu, X., Brix, H., Liu, L. & Guo, W. (2024). Trade-offs between Cd bioconcentration and translocation and underlying physiological and rhizobacterial mechanisms in Phragmites australis. Journal of Environmental Management, 371, Article 123291. https://doi.org/10.1016/j.jenvman.2024.123291
Kristensen, J., Barbero-Palacios, L., Barrio, I. C., Jacobsen, I. B. D., Kerby, J. T., López-Blanco, E., Malhi, Y., Le Moullec, M., Mueller, C. W., Post, E., Raundrup, K. & Macias-Fauria, M. (2024). Tree planting is no climate solution at northern high latitudes. Nature Geoscience, 17(11), 1087-1092. https://doi.org/10.1038/s41561-024-01573-4
Wang, B. (2024). Understanding extracellular electron transfer in electromicrobiology. [PhD thesis, Aarhus University]. Aarhus University.
Burgers, T. M., Azetsu-Scott, K., Myers, P. G., Else, B. G. T., Miller, L. A., Rysgaard, S., Chan, W., Tremblay, J. É. & Papakyriakou, T. (2024). Unraveling the Biogeochemical Drivers of Aragonite Saturation State in Baffin Bay: Insights From the West Greenland Continental Shelf. Journal of Geophysical Research: Oceans, 129(8), Article e2024JC021122. https://doi.org/10.1029/2024JC021122
Ordonez, A. & Gill, J. L. (2024). Unravelling the functional and phylogenetic dimensions of novel ecosystem assemblages. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1902), Article 20230324. https://doi.org/10.1098/rstb.2023.0324
Alsos, I. G., Boussange, V., Rijal, D. P., Beaulieu, M., Brown, A. G., Herzschuh, U., Svenning, J. C. & Pellissier, L. (2024). Using ancient sedimentary DNA to forecast ecosystem trajectories under climate change. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1902), Article 20230017. https://doi.org/10.1098/rstb.2023.0017
Keany, J. M., Burns, P., Abraham, A. J., Jantz, P., Makaga, L., Saatchi, S., Maisels, F., Abernethy, K. & Doughty, C. E. (2024). Using multiscale lidar to determine variation in canopy structure from African forest elephant trails. Remote Sensing in Ecology and Conservation, 10(5), 655-667. https://doi.org/10.1002/rse2.395
Mezzomo, P., Leong, J. V., Vodrážka, P., Moos, M., Jorge, L. R., Volfová, T., Michálek, J., de L. Ferreira, P., Kozel, P., Sedio, B. E. & Volf, M. (2024). Variation in induced responses in volatile and non-volatile metabolites among six willow species: Do willow species share responses to herbivory? Phytochemistry, 226, Article 114222. https://doi.org/10.1016/j.phytochem.2024.114222
Merl, T., Sedlacek, C. J., Pjevac, P., Fuchslueger, L., Sandén, T., Spiegel, H., Koren, K. & Giguere, A. T. (2024). Visualizing small-scale subsurface NH3 and pH dynamics surrounding nitrogen fertilizer granules and impacts on nitrification activity. Soil Biology and Biochemistry, 189, Article 109273. https://doi.org/10.1016/j.soilbio.2023.109273
Slik, F., Pinho, B. X., Griffith, D. M., Webb, E., Raghubanshi, A. S., Quaresma, A. C., Cuni Sanchez, A., Sultana, A., Souza, A. F., Ensslin, A., Hemp, A., Lowe, A., Marshall, A. R., Anitha, K., Lykke, A. M., Armadyanto, Mansor, A., Honam, A. K., Poulsen, A. D. ... Hemati, Z. (2024). Wind dispersed tree species have greater maximum height. Global Ecology and Biogeography, 33(9), Article e13878. https://doi.org/10.1111/geb.13878
Atkinson, J. & Freudenberger, D. (2024). Young woodland restoration plantings can be resilient to uncontrolled bushfires. Ecological Management and Restoration, 25(3), 177-181. https://doi.org/10.1111/emr.12616
Schøn, M. L., Mikkelsen, M. V. N., Jensen, K., Poulsen, J. M., Nørgaard, J. V. & Overgaard, J. (2023). 2x Preliminary results from respirometry experiments with black soldier fly larvae (BSFL). Poster session presented at ENORM Biofactory - Grand opening - Grand Opening af vores nye produktionsfaciliteter med en produktionskapacitet på 100 ton insekter om dagen, Flemming, Denmark.
Saavedra, D., Fernández, N. & Svenning, J. C. (2023). Addressing challenges for large-scale trophic rewilding. Journal for Nature Conservation, 73, Article 126382. https://doi.org/10.1016/j.jnc.2023.126382
Patton, P. T., Cheeseman, T., Abe, K., Yamaguchi, T., Reade, W., Southerland, K., Howard, A., Oleson, E. M., Allen, J. B., Ashe, E., Athayde, A., Baird, R. W., Basran, C., Cabrera, E., Calambokidis, J., Cardoso, J., Carroll, E. L., Cesario, A., Cheney, B. J. ... Bejder, L. (2023). A deep learning approach to photo–identification demonstrates high performance on two dozen cetacean species. Methods in Ecology and Evolution, 14(10), 2611-2625. https://doi.org/10.1111/2041-210X.14167
Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A. ... Bonet, T. M. (2023). A global catalog of whole-genome diversity from 233 primate species. Science, 380(6648), 906-913. https://doi.org/10.1126/science.abn7829
Power, C. C. (2023). A Greener Greenland? Assessing Arctic Shrub Dynamics Using Dendroecology. [PhD thesis, Aarhus University]. Aarhus Universitet.
Duvall, E. S., Griffiths, B. M., Clauss, M. & Abraham, A. J. (2023). Allometry of sodium requirements and mineral lick use among herbivorous mammals. Oikos, 2023(9), Article e10058. https://doi.org/10.1111/oik.10058