Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Loh, P.-R., Bhatia, G., Gusev, A., Finucane, H. K., Bulik-Sullivan, B. K., Pollack, S. J., Schizophrenia Working Group of the Psychiatric Genomics Consortium (Anders Børglum, Jakob Grove; members of -), O’Donovan, M. C., Neale, B. M., Patterson, N. & Price, A. L. (2015). Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis. Nature Genetics, 47, 1385–1392. https://doi.org/10.1038/ng.3431

Merkel, F. R. & Labansen, A., (2015). Høringssvar vedrørende revision af fuglebekendtgørelse, 2015, 5 p.

Kristensen, E., Merkel, F. R. & Labansen, A. (2015, Dec 22). Situationen for lomvier i og omkring Grønland er værre end først antaget. http://www.natur.gl/kommunikation/nyheder/nyhed/a/situationen-for-lomvier-i-groenland-er-vaerre-end-foerst-antaget/

Ramajo, L., Pérez-León, E., Hendriks, I. E., Marbà, N., Krause-Jensen, D., Sejr, M. K., Blicher, M., Lagos, N. A., Olsen, Y. S. & Duarte, C. M. (2016). Food supply confers calcifiers resistance to ocean acidification. Scientific Reports, 6(19374), Article 19374. https://doi.org/10.1038/srep19374

Merkel, F. R. (2015, Jun). Sporing via lys-loggere. http://niki.gl/da/artikler-om-vandrende-dyr/generelt-om-sporing/lys-loggere/

Merkel, F. R. (2015, Jun). Princippet bag satellitsporing. http://niki.gl/da/artikler-om-vandrende-dyr/generelt-om-sporing/sporing-via-satelliter/

Merkel, F. R. (2015, Jun). Ederfugle med forskellig vinterstrategi. http://niki.gl/da/artikler-om-vandrende-dyr/havfugle/ederfugl/

Mosbech, A. & Boertmann, D. (2015, Jun). Rødstrubet lom fra Nordøstgrønland sporet til det sydøstlige England. http://niki.gl/da/artikler-om-vandrende-dyr/havfugle/roedstrubet-lom/

Kousholt, A. & Kiderlen, M. (2016). Reconstruction of convex bodies from surface tensors. Advances in Applied Mathematics, 76, 1-33. https://doi.org/10.1016/j.aam.2016.01.001

Xu, P., Xu, M., Jiang, L., Yang, Q., Luo, Z., Dauter, Z., Huang, M. & Andreasen, P. A. (2015). Design of Specific Serine Protease Inhibitors Based on a Versatile Peptide Scaffold: Conversion of a Urokinase Inhibitor to a Plasma Kallikrein Inhibitor. Journal of Medicinal Chemistry, 58(22), 8868-8876. https://doi.org/10.1021/acs.jmedchem.5b01128

Jiang, L., Andersen, L. M., Andreasen, P. A., Chen, L. & Huang, M. (2016). Insights into the serine protease mechanism based on structural observations of the conversion of a peptidyl serine protease inhibitor to a substrate. B B A - General Subjects, 1860(3), 599-606. https://doi.org/10.1016/j.bbagen.2015.12.009

Patron, N. J., Orzaez, D., Marillonnet, S., Warzecha, H., Matthewman, C., Youles, M., Raitskin, O., Leveau, A., Farré, G., Rogers, C., Smith, A., Hibberd, J., Webb, A. A. R., Locke, J., Schornack, S., Ajioka, J., Baulcombe, D. C., Zipfel, C., Kamoun, S. ... Haseloff, J. (2015). Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytologist, 208(1), 13-9. https://doi.org/10.1111/nph.13532

Koch, B. E. V., Stougaard, J. & Spaink, H. P. (2015). Keeping track of the growing number of biological functions of chitin and its interaction partners in biomedical research. Glycobiology, 25(5), 469-482. https://doi.org/10.1093/glycob/cwv005

Kawaharada, Y., Kelly, S., Malolepszy, A., Andersen, S. U., Füchtbauer, W. S., Rasmussen, S. R., Mun, T., Sandal, N. N., Radutoiu, S., Madsen, L. H. & Stougaard, J. (2015). Legume recognition of rhizobia. Legume Perspectives, (7), 16-18. http://ils.nsseme.com/assets/LegumPerspect7.pdf

Vad-Nielsen, J., Jakobsen, K. R., Daugaard, T. F., Thomsen, R., Brügmann, A., Sørensen, B. S. & Nielsen, A. L. (2016). Regulatory dissection of the CBX5 and hnRNPA1 bi-directional promoter in human breast cancer cells reveals novel transcript variants differentially associated with HP1α down-regulation in metastatic cells. B M C Cancer, 16(1), 32. Article 32. https://doi.org/10.1186/s12885-016-2059-x

Urquhart, C., Fox, A. D., Francis, I., Griffin, L., Mitchell, C. & Stroud, D. A. (2015). Greenland white-fronted goose. Version 1.0. http://www.snh.gov.uk/docs/A1590815.pdf

Andersen, C. K., Kerckhoff, J., Lehnert, K. W., Chapman, B. J. & Mølmer, K. (2016). Closing a quantum feedback loop inside a cryostat: Autonomous state preparation and long-time memory of a superconducting qubit. Physical Review A, 93(1), Article 012346. https://doi.org/10.1103/PhysRevA.93.012346

Frederiksen, M., Descamps, S., Erikstad, K. E., Gaston, A. J., Gilchrist, H. G., Johansen, K. L., Kolbeinsson, Y., Linnebjerg, J., Mallory, M. L., McFarlane Tranquilla, L., Merkel, F. R., Montevecchi, W. A., Mosbech, A., Reiertsen, T. K., Robertson, G. J., Steen, H., Strøm, H. & Thórarinsson, T. L. (2015). The grand overview: where do Atlantic thick-billed murres go in winter?. Poster session presented at 2nd World Seabird Conference, Cape Town, South Africa.

Andersen, J. H., Murray, C., Larsen, M. M., Green, N., Høgåsen, T., Dahlgren, E., Garnaga-Budré, G., Gustavson, K., Haarich, M., Kallenbach, E. M. F., Mannio, J., Strand, J. & Korpinen, S. (2016). Development and testing of a prototype tool for integrated assessment of chemical status in marine environments. Environmental Monitoring and Assessment, 188(2), 1-13. Article 115. https://doi.org/10.1007/s10661-016-5121-x

Jensen, A. N. & Yu, J. (2016). Stable intersections of tropical varieties. Journal of Algebraic Combinatorics, 43(1), 101-128. https://doi.org/10.1007/s10801-015-0627-9

Tsakos, M., Clement, L. L., Schaffert, E. S., Olsen, F. N., Rupiani, S., Djurhuus, R., Yu, W., Jacobsen, K. M., Villadsen, N. L. & Poulsen, T. B. (2016). Total synthesis and biological evaluation of rakicidin A and discovery of a simplified bioactive analogue. Angewandte Chemie International Edition, 55(3), 1030-1035. https://doi.org/10.1002/anie.201509926

Olsen, F. N., Tsakos, M. & Poulsen, T. B. (2015). Npys-Mediated Elimination Reactions of Alcohols and Thiols: A Facile Route to Dehydroalanine and Dehydrobutyrine Building Blocks. SYNLETT: Accounts and Rapid Communications in Chemical Synthesis, 26(19), 2697-2701. Article st-2015-b0596-l. https://doi.org/10.1055/s-0035-1560537

Scrivener, K. L., Lothenbach, B., De Belie, N., Gruyaert, E., Skibsted, J., Snellings, R. & Vollpracht, A. (2015). TC 238-SCM: hydration and microstructure of concrete with SCMs: State of the art on methods to determine degree of reaction of SCMs. Materials and Structures, 48(4), 835-862. https://doi.org/10.1617/s11527-015-0527-4

Sevelsted, T. F. & Skibsted, J. (2015). Carbonation of C-S-H and C-A-S-H samples studied by ¹³C, ²⁷Al and ²⁹Si MAS NMR spectroscopy. Cement and Concrete Research, 71, 56-65. https://doi.org/10.1016/j.cemconres.2015.01.019

Vigna, E. & Skibsted, J. (2015). Optimization of alkali activated Portland cement – calcined clay blends based on the phase assemblage in the Na₂O-CaO-Al₂O₃-SiO₂-H₂O system. In K. Scrivener & A. Favier (Eds.), Calcined Clays for Sustainable Concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 101-107). Springer. https://doi.org/10.1007/978-94-017-9939-3_13

Dai, Z., Kunther, W., Ferreiro, S., Herfort, D. & Skibsted, J. (2015). Phase assemblages in hydrated Portland cement, calcined clay and limestone blends from solid-state ²⁷Al and ²⁹Si MAS NMR, XRD, and thermodynamic modeling. In K. Scrivener & A. Favier (Eds.), Calcined Clays for Sustainable Concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 109-115). Springer. https://doi.org/10.1007/978-94-017-9939-3_14

Garg, N. & Skibsted, J. (2015). Heated montmorillonite: strcuture, reactivity, and dissolution. In K. Scrivener & A. Favier (Eds.), Calcined Clays for Sustainable Concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 117-124). Springer. https://doi.org/10.1007/978-94-017-9939-3_15

Gomez, C. R. S. Q. & Skibsted, J. (2015). Reactivity of heated kaolinite from a combination of solid-state NMR and chemical methods. In K. Scrivener & A. Favier (Eds.), Calcined Clays for Sustainable Concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 125-132). Springer. https://doi.org/10.1007/978-94-017-9939-3_16

Shi, Z., Geiker, M. R., de Weerdt, K., Lothenbach, B., Kaufmann, J., Kunther, W., Ferreiro, S., Herfort, D. & Skibsted, J. (2015). Durability of Portland cement blends including calcined clays and limestone: Interactions with sulfate, chloride and carbonate ions. In K. Scrivener & A. Favier (Eds.), Calcined clays for sustainable concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 133-141). Springer. https://doi.org/10.1007/978-94-017-9939-3_17

Kunther, W., Dai, Z. & Skibsted, J. (2015). Thermodynamic modeling of Portland cement - metakaolin - limestone blends. In K. Scrivener & A. Favier (Eds.), Calcined clays for sustainable concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 143-149). Springer. https://doi.org/10.1007/978-94-017-9939-3_18

Enemark-Rasmussen, K., Moesgaard, M., Køhler, L. L., Tran, T. T. & Skibsted, J. (2015). Comparison of the pozzolanic reactivity for flash and soak calcined clays in Portland cement blends. In K. Scrivener & A. Favier (Eds.), Calcined Clays for Sustainable Concrete: Proceedings of the 1st International Conference on Calcined Clays for Sustainable Concrete (pp. 151-157). Springer. https://doi.org/10.1007/978-94-017-9939-3_19

Skibsted, J., Dai, Z., Enemark-Rasmussen, K. & Garg, N. (2015). Thermal activation and pozzolanic reactivity of calcined clay minerals for applications in Portland cement blends. In 19th IBAUSIL – Internationale Baustofftagung (pp. 191-204). Bauhaus-Universität Weimar.

Kunther, W., Garzon, S. F. & Skibsted, J. (2015). Does the chemical composition of the C-S-H phase influence the strength of cementitious materials? In 19th IBAUSIL – Internationale Baustofftagung (pp. 623-632). Bauhaus-Universität Weimar.

Kunther, W., Dai, Z. & Skibsted, J. (2015). Thermodynamic modeling of Portland cement – metakaolin – limestone blends. In ICCC 2015 Beijing : the 14th international congress on the chemistry of cement, 13-16 October, 2015: 1 Abstract book (pp. 108-114)

Garg, N., Enemark-Rasmussen, K., Dai, Z. & Skibsted, J. (2015). Pozzolanic reactivity of thermally activated kaolinite and montmorillonite in Portland cement blends and their impact on the formed C-S-H phase. In ICCC 2015 Beijing : the 14th international congress on the chemistry of cement, 13-16 October, 2015: Abstract Book vol. 1 (pp. 272)

De Belie, N., Schrivener, K., Lothenbach, B., Gruyaert, E., Skibsted, J., Snellings, R., Villagran, Y. & Vollpracht, A. (2015). Determination of the degree of reaction of fly ash in blended cement pastes. In Proceedings of the 14th International Congress on the Chemistry of Cement (pp. 298)

Gomez, C. R. S. Q. & Skibsted, J. (2015). Reactivity of heated kaolinite from a combination of chemical methods and solid-state NMR spectroscopy. In ICCC 2015 Beijing : the 14th international congress on the chemistry of cement, 13-16 October, 2015 (pp. 310)

Shi, Z., Lothenbach, B., Geiker, M. R., Kaufmann, J., Garzon, S. F. & Skibsted, J. (2015). Carbonation of Portland cement mortars including metakaolin and limestone. In Proceedings of the 14th International Congress on the Chemistry of Cement (pp. 441)

Deshpande, A. & Nielsen, A. E. B. (2016). Lattice Laughlin states on the torus from conformal field theory. Journal of Statistical Mechanics: Theory and Experiment, 2016(1), 013102. Article 013102. https://doi.org/10.1088/1742-5468/2016/01/013102

Friis, K. P., Iturrioz, X., Thomsen, J., Alvear-Perez, R., Bahrami, S., Llorens-Cortes, C. & Pedersen, F. S. (2015). Directed Molecular Evolution of an Engineered Gammaretroviral Envelope Protein with Dual Receptor Use Shows Stable Maintenance of Both Receptor Specificities. Journal of Virology, 90(3), 1647-56. https://doi.org/10.1128/JVI.02013-15

Kragh, S. L., Preus, S., Gudnason, D. A., Aznauryan, M., Mergny, J.-L. & Birkedal, V. (2016). Folding dynamics and conformational heterogeneity of human telomeric G-quadruplex structures in Na+ solutions by single molecule FRET microscopy. Nucleic Acids Research, 44(1), 464-471. https://doi.org/10.1093/nar/gkv1320

Hildebrandt, L., Preus, S. & Birkedal, V. (2015). Quantitative single molecule FRET efficiency using TIRF microscopy. Faraday Discussions, 184, 131-142. https://doi.org/10.1039/c5fd00100e

David, B., Dowsley, R., Katti, R. & Nascimento, A. C. A. (2015). Efficient unconditionally secure comparison and privacy preserving machine learning classification protocols. In M.-H. Au & A. Miyaji (Eds.), Provable Security: 9th International Conference, ProvSec 2015, Kanazawa, Japan, November 24-26, 2015, Proceedings (Vol. 9451, pp. 354-367). Springer VS. https://doi.org/10.1007/978-3-319-26059-4_20

Abe, M., Chase, M., David, B., Kohlweiss, M., Nishimaki, R. & Ohkubo, M. (2016). Constant-Size Structure-Preserving Signatures: Generic Constructions and Simple Assumptions. Journal of Cryptology, 29(4), 833-878. https://doi.org/10.1007/s00145-015-9211-7

Chown, S. L., Duffy, G. A. & Sørensen, J. G. (2015). Upper Thermal tolerance in aquatic insects. Current Opinion in Insect Science, 11, 78-83. https://doi.org/10.1016/j.cois.2015.09.012

Orrit, M., Evans, G., Cordes, T., Kratochvilova, I., Moerner, W., Needham, L.-M., Sekatskii, S., Vainer, Y., Faez, S., Vedral, V., Goswami, H., Clark, A., Meixner, A., Piatkowski, L., Birkedal, V., Sandoghar, V., Skinner, G., Langbein, W., Du, J. ... Hanson, R. (2015). Quantum optics, molecular spectroscopy and low-temperature spectroscopy: general discussion. Faraday Discussions, 184, 275-303. https://doi.org/10.1039/C5FD90088C

Cordes, T., Moerner, W., Orrit, M., Needham, L.-M., Sekatskii, S., Faez, S., Goswami, H., Clark, A., Meixner, A., Piatkowski, L., Sandoghar, V., Skinner, G., Balzarotti, F., Langbein, W., Novotny, L., Birkedal, V., Koberling, F., Michaelis, J., Williams, P. ... Shi, X. (2015). Supersolution techniques, biophysics with nanostructures, and fluorescence energy transfer: general discussion. Faraday Discussions, 184, 143-162. https://doi.org/10.1039/C5FD90094H

Jepsen, M. DE., Sørensen, R. S., Andersen, E. S., Kjems, J. & Birkedal, V. (2015). Single Molecule FRET Analysis of the Closed and Open States of a DNA Origami Box. Biophysical Journal, 108(2, suppl. 1), 175a. https://doi.org/10.1016/j.bpj.2014.11.968

Preus, S., Hildebrandt, L., Kragh, S. L. & Birkedal, V. (2015). Fast and User-Friendly Single-Molecule FRET Microscopy Software. Biophysical Journal, 108, 163a.

Birkedal, V. (2015). Insights into Nucleic Acids Structural Dynamics with Single Molecule FRET Studies. Biophysical Journal, 108(2, suppl. 1), 6a. https://doi.org/10.1016/j.bpj.2014.11.057

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