Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Mailund & Kristensen, L. M. (2002). A Compositional Sweep-Line State Space Exploration Method. In Proceedings of Formal Description Techniques for Distributed Systems and Communication Protocols (FORTE 2002) (pp. 327-343)

Kristensen, L. M. & Mailund (2003). Efficient Path Finding with the Sweep-Line Method using External Storage. In Proceedings of International Conference on Formal Engineering Methods (ICFEM 2003) (pp. 319-337)

Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Quartet Distance between General Trees. In Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM) (pp. 796-799)

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Computing the Quartet Distance between Trees of Arbitrary Degree. In Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 77-88)

Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 34(1), 23-37.

Mailund & Pedersen, C. N. S. (2004). QDist—Quartet Distance Between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund & Pedersen, C. N. S. (2004). QuickJoin—Fast Neighbour-Joining Tree Reconstruction. Bioinformatics, 20(17), 3261-3262.

Besenbacher, S., Mailund, Westh-Nielsen, L. & Pedersen, C. N. S. (2005). RBT—A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.

Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Staerfeldt, HH., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, GK.-S., Yu, J., Wang, J., Bendixen, C. ... Bolund, L. (2005). Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing. B M C Genomics, 6(70). http://www.biomedcentral.com/1471-2164/6/70

Mailund , Schierup, M. H., Pedersen, C. N. S., Mechlenborg, P., Madsen, J. N. & Schauser, L. (2005). CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. B M C Bioinformatics, 6(252). http://www.biomedcentral.com/1471-2105/6/252

Mailund , Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. B M C Bioinformatics, 7(29).

Hundahl, C., Stoltenberg, M., Fago, A., Weber, R. E., Dewilde, S., Fordel, E. & Danscher, G. (2005). Effects of short-term hypoxia on neuroglobin levels and localization in mouse brain tissues. Neuropathology and Applied Neurobiology, 31, 610-617.

Hankeln, T., Ebner, B., Fuchs, C., Gerlach, F., Haberkamp, M., Laufs, T. L., Roesner, A., Schmidt, M., Weich, B., Wystub, S., Saaler-Reinhardt, S., Reuss, S., Bolognesi, M., De Sanctis, D., Marden, M. C., Kiger, L., Moens, L., Dewilde, S., Nevo, E. ... Burmester, T. (2005). Neuroglobin and cytoglobin in search of their role in the vertebrate globin family. Journal of Inorganic Biochemistry, 99, 110-119.

Herold, S. & Fago, A. (2005). Reactions of peroxynitrite with globin proteins and their possible physiological role. Comp. Biochem. Physiol., Part A., 142, 124-129.

Tengberg, A., Hall, P. O. J., Andersson, U., Lindén, B., Styrenius, O., Boland, G., de Bovee, F., Carlsson, B., Ceradini, S., Devol, A., Duivenveld, G., Friemann, J.-U., Glud, R. N., Khripounoff, A., Leather, J., Linke, P., Lund-Hansen, L. C., Rowe, G., Santschi, P. ... Witte, U. (2005). Intercalibration of benthic flux chambers. II. Hydrodynamic characterization and flux comparisons of 14 different designs. Mar. Chem., 94, 147-173.

Lundgren, R. & Olesen, J. M. (2005). The dense and highly connected world of Greenland plants and their pollinators. Arctic, Antarctic, and Alpine Research, 37, 514-520.

Møller, J. S. (2005). The translation invariant massive Nelson model: I. The bottom of the spectrum. Annales Henri Poincare, 6, 1091--1135.

Møller, J. S. (2006). On the essential spectrum of the translation invariant Nelson model. In Mathematical Physics of Quantum Mechanics, Selected and Refereed Lectures from QMath9" (Lecture Notes in Physics Vol 690 ed., pp. 179-195). Springer.

Møller, J. S. (2000). An abstract radiation condition and applications to N-body systems. Rev. Math. Phys., 12, 767-803.

Møller, J. S. (2000). Two-body short-range systems in a time-periodic electric field. Duke Math. J., 105, 135-166.

Møller, J. S. (2003). Low-temperature localisation for continuous spin-systems. Potential Analysis, 19, 163--192.

Møller, J. S. (2001). The low-temperature limit of transfer operators in fixed dimension. Annales Henri Poincare, 2, 1099-1137.

Møller, J. S. & Skibsted, E. (2004). Spectral theory of time-periodic many-body systems. Advances in Mathematics, 188, 137-221.

Nielsen, H. & Clark, M. (1995). Crossed Wires and Missing Connections: Valdemar Poulsen, the American Telegraphone Company, and the Failure to Commercialize Magnetic Recording. Business History Review, 69, 1-41.

Nielsen, H. & Wistoft, B. (1996). Industriens Mænd - Et Krøyer Maleris tilblivelse og industrihistoriske betydning. Klim.

Nielsen, H. & Wistoft, B. (1998). Painting Technological Progress: P.S. Krøyer's The Industrialists (1904). Technology and Culture, 39(3), 408-433.

Nielsen, H., Nielsen, K., Petersen, F. & Jensen, H. S. (1998). Til samfundets tarv - Forskningscenter Risøs historie. Danmarks Tekniske Universitet, Risø Nationallaboratoriet for Bæredygtig Energi.

Nielsen, H., Petersen, F., Jensen, H. S. & Nielsen, K. (1999). Risø and the Attempts to Introduce Nuclear Power into Denmark. Centaurus (Copenhagen), 41, 64-92.

Nielsen, H. (2002). Exposing the Flaws in the Nobel facade. Physics World, 15(4), 46-47.

Nielsen, H. & Nielsen, K. (2001). Neighbouring Nobel: The History of Thirteen Danish Nobel Prizes. Aarhus Universitetsforlag.

Nielsen, H. & Nielsen, K. (2000). Le porte de la gloire. Les Cahiers de Science & Vie, 38-42.

Nielsen, H., Nielsen, K., Petersen, F. & Jensen, H. S. (1998). Risø National research - Forty Years of Research in a Changing Society. Risø National laboratory.

Nielsen, H. & Clark, M. H. (1998). The Telegraphone. In E. D. Daniel, C. D. Mee & M. H. Clark (Eds.), Magnetic Recording: The First 100 Years (pp. 15-29). IEEE Press.

Buhl, H., Clark, M. H. & Nielsen, H. (1998). The Telegraphone and the Arc Transmitter: On the Difficulties of Advanced Technology in a Late Industrializing Country. The Academy of the Technical Sciences.

Nielsen, H. (1999). Telegrafonen - en opfindelse dømt til at mislykkes? Årbog for Danmarks Tekniske Museum, 6-25.

Nielsen, H. & Nielsen, K. (1999). The Danish Nobel Project. Newsletter of the Nobel Museum, 5-6.

Nielsen, H. (2005). Teknologi og samfund. In M. Hansen (Ed.), Almen Studieforberedelse - Videnskabernes temaer og historie (pp. 161-174). Gyldendal.

Nielsen, H., Nielsen, K. & Siggard Jensen, H. (2005). Skruen uden ende - Den vestlige teknologis historie. (3. ed.) Nyt Teknisk Forlag.

Jantzen, J. C. & Schwermer, J. (2005). Algebra. Springer.

Møller, J. S. (1993). Second quantization in a quon-algebra. J. Phys. A., 26, 4643-4652.

Herbst, I., Møller, J. S. & Skibsted, E. (1995). Spectral analysis of N-body Stark Hamiltonians. Communications in Mathematical Physics, 174, 261-294.

Herbst, I., Møller, J. S. & Skibsted, E. (1996). Asymptotic completeness for N-body Stark Hamiltonians. Communications in Mathematical Physics, 174, 509-535.

Brynskov, M. & Andersen, P. B. (2004). Habitats, Activities, and Signs. In J. Filipe & K. Liu (Eds.), Proceedings of The 7th International Workshop on Organisational Semiotics. (pp. 128-151). Institute for Systems and Technologies of Information, Control and Communication.

Matte, O. & Møller, J. S. (2005). Semiclassical analysis of Witten Laplacians and Schrodinger operators in high dimension. Journal of Functional Analysis, 220, 243-264.

Pedersen, J. (2006). The class of distributions of periodic Ornstein-Uhlenbeck processes driven by Levy processes. Journal of Theoretical Probability, 18, 209-235.

Arentoft, T., Bouzid, M. Y., Sterken, C., Freyhammer, L. M. & Frandsen, S. (2005). A dozen delta Scuti stars in the open cluster NGC 1817. PASP, 117(832), 601-614.

Nielsen, K. (2005). Efteruddannelse af folkeskolens lærere i naturfag. Uddannelse, (6), 22-30.

Andersen, L. W., Simonsen, V., Søgaard, B., Madsen, A. B., Pertoldi, C., Wind, P., Pihl, S., Fog, K. & Damgaard, C. F. (2005). Anvendelse af molekylærgenetiske markører i naturforvaltningen: Faglig rapport fra DMU, nr. 539.

Displaying results 751 to 800 out of 53478

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Lustermans, J., Bjerg, J. J., Burdorf, L., Nielsen, L. P., Schramm, A. & Marshall, I. P. G. (2023). Persistent flocks of diverse motile bacteria in long-term incubations of electron-conducting cable bacteria, Candidatus Electronema aureum. Frontiers in Microbiology, 14, Article 1008293. https://doi.org/10.3389/fmicb.2023.1008293

Trujillo, W. & Balslev, H. (2023). Piper svenningii – a new species from Ecuador, Colombia, and Perú. Nordic Journal of Botany, 2023(6), Article e03897. https://doi.org/10.1111/njb.03897

García Criado, M., Myers-Smith, I. H., Bjorkman, A. D., Normand, S., Blach-Overgaard, A., Thomas, H. J. D., Eskelinen, A., Happonen, K., Alatalo, J. M., Anadon-Rosell, A., Aubin, I., te Beest, M., Betway-May, K. R., Blok, D., Buras, A., Cerabolini, B. E. L., Christie, K., Cornelissen, J. H. C., Forbes, B. C. ... Virkkala, A. M. (2023). Plant traits poorly predict winner and loser shrub species in a warming tundra biome. Nature Communications, 14(1), Article 3837. https://doi.org/10.1038/s41467-023-39573-4

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology Spectrum, 11(4), Article e0062523. https://doi.org/10.1128/spectrum.00625-23

Pandit, S., Jacquemin, L., Zhang, J., Gao, Z., Nishina, Y., Meyer, R. L., Mijakovic, I., Bianco, A. & Pang, C. (2023). Polymyxin B complexation enhances the antimicrobial potential of graphene oxide. Frontiers in cellular and infection microbiology, 13, Article 1209563. https://doi.org/10.3389/fcimb.2023.1209563

Ahmed, A. S., Chala, D., Kufa, C. A., Atickem, A., Bekele, A., Svenning, J. C. & Zinner, D. (2023). Potential changes in the extent of suitable habitats for geladas (Theropithecus gelada) in the Anthropocene. BMC Ecology and Evolution, 23(1), Article 65. https://doi.org/10.1186/s12862-023-02173-3

Hansen, M. M. (2023). Prepping for climate change by introgressive hybridization. Trends in Genetics, 39(7), 524-525. https://doi.org/10.1016/j.tig.2023.03.007

Nuijten, R. J. M., Katzner, T. E., Allen, A. M., Bijleveld, A. I., Boorsma, T., Börger, L., Cagnacci, F., Hart, T., Henley, M. A., Herren, R. M., Kok, E. M. A., Maree, B., Nebe, B., Shohami, D., Vogel, S. M., Walker, P., Heitkönig, I. M. A. & Milner-Gulland, E. J. (2023). Priorities for translating goodwill between movement ecologists and conservation practitioners into effective collaboration. Conservation Science and Practice, 5(1), Article e12870. https://doi.org/10.1111/csp2.12870

Hansen, R. R., Damgaard, C., Kjær, C., Blikdorff Rasksen, M., Thomsen, P. F. & Strandberg, M. T. (2023). Quantification of arthropod species resources using distance-based measures – ground beetles as focal group. Ecological Indicators, 147, Article 110026. https://doi.org/10.1016/j.ecolind.2023.110026

Vivier, F., Wells, R. S., Hill, M. C., Yano, K. M., Bradford, A. L., Leunissen, E. M., Pacini, A., Booth, C. G., Rocho-Levine, J., Currie, J. J., Patton, P. T. & Bejder, L. (2023). Quantifying the age structure of free-ranging delphinid populations: Testing the accuracy of Unoccupied Aerial System photogrammetry. Ecology and Evolution, 13(6), Article e10082. https://doi.org/10.1002/ece3.10082

Lenton, T. M., Xu, C., Abrams, J. F., Ghadiali, A., Loriani, S., Sakschewski, B., Zimm, C., Ebi, K. L., Dunn, R. R., Svenning, J. C. & Scheffer, M. (2023). Quantifying the human cost of global warming. Nature Sustainability, 6(10), 1237-1247. https://doi.org/10.1038/s41893-023-01132-6

Koger, B., Deshpande, A., Kerby, J. T., Graving, J. M., Costelloe, B. R. & Couzin, I. D. (2023). Quantifying the movement, behaviour and environmental context of group-living animals using drones and computer vision. Journal of Animal Ecology, 92(7), 1357-1371. https://doi.org/10.1111/1365-2656.13904

Mantoani, M. C., Emygdio, A. P. M., Degobbi, C., Sapucci, C. R., Guerra, L. C. C., Dias, M. A. F. S., Dias, P. L. S., Zanetti, R. H. S., Rodrigues, F., Araujo, G. G., Silva, D. M. C., Filho, V. B. D., Boschilia, S. M., Martins, J. A., Carotenuto, F., Šantl-Temkiv, T., Morris, C. E. & Gonçalves, F. L. T. (2023). Rainfall effects on vertical profiles of airborne fungi over a mixed land-use context at the Brazilian Atlantic Forest biodiversity hotspot. Agricultural and Forest Meteorology, 331, Article 109352. https://doi.org/10.1016/j.agrformet.2023.109352

Gligorescu, A., Chen, L., Jensen, K., Nasiri Moghadam, N., Kristensen, T. N. & Sørensen, J. G. (2023). Rapid evolutionary adaptation to diet composition in the black soldier fly (Hermetia illucens). Insects, 14(10), Article 821. https://doi.org/10.3390/insects14100821

DBDS Genetic Consortium (2023). Rare variants with large effects provide functional insights into the pathology of migraine subtypes, with and without aura. Nature Genetics, 55(11), 1843-1853. https://doi.org/10.1038/s41588-023-01538-0

Kristensen, M. F., Lund, M. B., Schramm, A., Lau, E. F. & Schlafer, S. (2023). Ratiometric monitoring of extracellular pH at the microscale in in situ-grown dental biofilms exposed to different saliva flow velocities and film thicknesses. Abstract from 70th ORCA Congress, Egmond aan Zee, Netherlands.

Kristensen, M. F., Lund, M. B., Schramm, A., Lau, E. F. & Schlafer, S. (2023). Ratiometric monitoring of extracellular pH at the microscale in in situ-grown dental biofilms exposed to different saliva flow velocities and film thicknesses. Poster session presented at Poster session presented at the 70th Annual ORCA Congress, Egmond Aan Zee, Netherlands.

Kristensen, M. F., Lund, M. B., Schramm, A., Lau, E. F. & Schlafer, S. (2023). Ratiometric monitoring of extracellular pH at the microscale in in situ-grown dental biofilms exposed to different saliva flow velocities and film thicknesses. Caries Research, 57(3), 353-353. Article 72. https://doi.org/10.1159/000534630

Carrer, M., Dibona, R., Prendin, A. L. & Brunetti, M. (2023). Recent waning snowpack in the Alps is unprecedented in the last six centuries. Nature Climate Change, 13(2), 155-160. https://doi.org/10.1038/s41558-022-01575-3

Verdú, M., Garrido, J. L., Alcántara, J. M., Montesinos-Navarro, A., Aguilar, S., Aizen, M. A., Al-Namazi, A. A., Alifriqui, M., Allen, D., Anderson-Teixeira, K. J., Armas, C., Bastida, J. M., Bellido, T., Bonanomi, G., Paterno, G. B., Briceño, H., de Oliveira, R. A. C., Campoy, J. G., Chaieb, G. ... Zamora, R. (2023). RecruitNet: A global database of plant recruitment networks. Ecology, 104(2), Article e3923. https://doi.org/10.1002/ecy.3923

Koren, K., Steininger, F. & McGraw, C. M. (2023). Reducing biofouling on optical oxygen sensors; a simple modification enabling sensor cleaning via water splitting. Analytical Methods, 15(22), 2773-2776. https://doi.org/10.1039/d3ay00376k

Quadra, G., Boonman, C. C. F., Vroom, R., Temmink, R., Smolders, A., Geurts, J., Aben, R., Weideveld, S. & Fritz, C. (2023). Removing 10 cm of degraded peat mitigates unwanted effects of peatland rewetting: a mesocosm study. Biogeochemistry, 163(1), 65-84. https://doi.org/10.1007/s10533-022-01007-6

Wang, B., Zhang, Y. & Minteer, S. D. (2023). Renewable electron-driven bioinorganic nitrogen fixation: a superior route toward green ammonia? Energy and Environmental Science, 16, 404-420. https://doi.org/10.1039/d2ee03132a

Neves, B., Ferreira, P. D. L., Prosdocimi, F., Kessous, I. M., Couto, D. R., Moura, R. L., Salgueiro, F., Costa, A. F., Bacon, C. D. & Antonelli, A. (2023). Repeated evolution of pollination syndromes in a highly diverse bromeliad lineage is correlated with shifts in life form and habitat. Botanical Journal of the Linnean Society, 203(2), 111-122. Article boad015. https://doi.org/10.1093/botlinnean/boad015

Wang, L., Pedersen, P. B. M. & Svenning, J.-C. (2023). Rewilding abandoned farmland has greater sustainability benefits than afforestation. npj biodiversity, 2, Article 5. https://doi.org/10.1038/s44185-022-00009-9

M, Z., M, B., S, B., U, C., Vg, C., Marzocchi, U., Pc, M., A, Z. & Es, B. (2023). Role of crab holobionts in benthic N cycling in mangroves with different trophic status. Mar Ecol Prog Ser, 712, 87-99. https://doi.org/10.3354/meps14327

Henriksen, L. D. R., Larsen, M. B., Johnsen, T. J., Larsen, S. E., Riis, T. & Baattrup-Pedersen, A. (2023). Root development is faster in common species of Potamogeton compared to declining species of Potamogeton in Danish lowland streams. Aquatic Botany, 189, Article 103702. https://doi.org/10.1016/j.aquabot.2023.103702

Herrik, A. L., Mogensen, N., Svenning, J. C. & Buitenwerf, R. (2023). Rotational grazing with cattle-free zones supports the coexistence of cattle and wild herbivores in African rangelands. Journal of Applied Ecology, 60(10), 2154-2166. https://doi.org/10.1111/1365-2664.14493

Neuffer, B., Bechsgaard, J., Paetsch, M., Titel, C., Wesse, C., Bona, E., Schimpf, R., Žerdoner Čalasan, A. & Hurka, H. (2023). S-alleles and mating system in natural populations of Capsella grandiflora (Brassicaceae) and its congeneric relatives. Flora, 299, Article 152206. https://doi.org/10.1016/j.flora.2022.152206

Pedersen, P. B. M. & Kristensen, J. A. (2023). Sammenspil mellem naturgenopretning og klimaafbødning og –tilpasning. https://bio.au.dk/fileadmin/aar.au.dk/Billeder/Forskning/Forskningscentre/SustainScapes/Sammenspil_mellem_naturgenopretning_og_klimaafboedning_og_-_tilpasning.pdf

Wallach, A. D., Ramp, D., Benítez-López, A., Wooster, E. I. F., Carroll, S., Carthey, A. J. R., Rogers, E. I. E., Middleton, O., Zawada, K. J. A., Svenning, J. C., Avidor, E. & Lundgren, E. (2023). Savviness of prey to introduced predators. Conservation Biology, 37(2), Article e14012. https://doi.org/10.1111/cobi.14012

Mikkelsen, P. S. (2023). Scoresby Sund: På opdagelse i Nordøstgrønland. Xsirius Books. På opdagelse i Nordøstgrønland / Discovering North-East Greenland Vol. 4

Gimenez-Grau, P., Camarero, L., Palacín-Lizarbe, C., Sala-Faig, M., Zufiaurre, A., Pla-Rabes, S., Felip, M. & Catalan, J. (2023). Self-filling enclosures to experimentally assess plankton response to pulse nutrient enrichments. Journal of Plankton Research, 45(2), 266-277. https://doi.org/10.1093/plankt/fbac074

Steininger, F. (2023). Sensing of pH-Dependent Analytes. Århus Universitet.

Merl, T. (2023). Sensing Soil Processes - Visualizing Ammonia Dynamics and Soil Microenvironments. Århus Universitet.

Wu, N., Guo, K., Zou, Y., He, F. & Riis, T. (2023). SER: An R package to characterize environmental regimes. Ecology and Evolution, 13(3), Article e9882. https://doi.org/10.1002/ece3.9882

Hoeks, S., Huijbregts, M. A. J., Boonman, C. C. F., Faurby, S., Svenning, J.-C., Harfoot, M. B. J. & Santini, L. (2023). Shifts in ecosystem equilibria following trophic rewilding. Diversity and Distributions, 29(12), 1512-1526. https://doi.org/10.1111/ddi.13786

Istenic, D. & Arias, C. A. (2023). Sistemas evaporativos con sauces. In Soluciones basadas en la naturaleza para el tratamiento de aguas residuales (pp. 46-49). IWA Publishing.