Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Lissandrini, M., Mottin, D., Hose, K. & Pedersen, T. B. (2022). Knowledge Graph Exploration Systems: are we lost?. Paper presented at 12th Annual Conference on
Innovative Data Systems Research (CIDR ’22), Chaminade, United States. https://dblp.org/db/conf/cidr/cidr2022.html

Draganov, A., Berry, T., Jørgensen, J. R., Nellemann, K. S., Assent, I. & Mottin, D. (2022). GiDR-DUN; Gradient Dimensionality Reduction -- Differences and Unification. https://doi.org/10.48550/arXiv.2206.09689

Moradan, A., Draganov, A., Mottin, D. & Assent, I. (2021). UCoDe: Unified Community Detection with Graph Convolutional Networks. ArXiv. https://doi.org/10.48550/arXiv.2112.14822

Sutjaritjai, N., Panyadee, P., Phumthum, M., Inta, A. & Balslev, H. (2022). High Diversity of Medicinal Uses of Thai Legumes (Fabaceae) and Their Potential in Public Herbal Medicine. Diversity, 14(8), Article 588. https://doi.org/10.3390/d14080588

Planas, X. B., Ordóñez, A., Lewenstein, M. & Maxwell, A. S. (2022). Ultrafast Imaging of Molecular Chirality with Photoelectron Vortices. Physical Review Letters, 129(23), Article 233201. https://doi.org/10.1103/PhysRevLett.129.233201

Zhou, Q., Thøgersen, M. K., Rezayee, N. M., Jørgensen, K. A. & Houk, K. N. (2022). Ambimodal Bispericyclic [6 + 4]/[4 + 6] Transition State Competes with Diradical Pathways in the Cycloheptatriene Dimerization: Dynamics and Experimental Characterization of Thermal Dimers. Journal of the American Chemical Society, 144(48), 22251-22261. https://doi.org/10.1021/jacs.2c10407

Veileborg, O. H., Saioc, G.-V. & Møller, A. (2022). Detecting Blocking Errors in Go Programs using Localized Abstract Interpretation. In iWOAR 2022 - 7th International Workshop on Sensor-Based Activity Recognition and Artificial Intelligence, Proceedings (pp. 1-12). Article 32 Association for Computing Machinery. https://doi.org/10.1145/3551349.3561154

Pikirayi, I., Sulas, F., Nxumalo, B., Sagiya, M. E., Stott, D., Kristiansen, S. M., Chirikure, S. & Musindo, T. (2022). Climate-smart harvesting and storing of water: The legacy of dhaka pits at Great Zimbabwe. Anthropocene, 40, Article 100357. https://doi.org/10.1016/j.ancene.2022.100357

Friis, E. M., Crane, P. R. & Pedersen, K. R. (2019). Geminispermum, an Early Cretaceous (early-middle Albian) cupulate unit from the angiosperm-dominated Puddledock flora of eastern North America. Acta Palaeobotanica, 59(2), 229-239. https://doi.org/10.2478/acpa-2019-0020

Friis, E. M., Crane, P. R. & Pedersen, K. R. (2019). The Early Cretaceous Mesofossil Flora of Torres Vedras (Ne of Forte da Forca), Portugal: A Palaeofloristic Analysis of an Early Angiosperm Community. Fossil Imprint, 75(2), 153-257. https://doi.org/10.2478/if-2019-0013

Ahrenfeldt, J., Christensen, D. S., Sokač, M., Kisistók, J., McGranahan, N. & Birkbak, N. J. (2022). Computational Analysis Reveals the Temporal Acquisition of Pathway Alterations during the Evolution of Cancer. Cancers, 14(23), Article 5817. https://doi.org/10.3390/cancers14235817

Tzortzakakis, A. F., Petrosyan, D., Fleischhauer, M. & Mølmer, K. (2022). Microscopic dynamics and an effective Landau-Zener transition in the quasiadiabatic preparation of spatially ordered states of Rydberg excitations. Physical Review A, 106(6), Article 063302. https://doi.org/10.1103/PhysRevA.106.063302

Busato, S., Gordon, M., Chaudhari, M., Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2023). Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies. Current Opinion in Plant Biology, 71, Article 102326. https://doi.org/10.1016/j.pbi.2022.102326

Jensen, J. H. M. & Mølmer, K. (2022). Gaussian theory for estimating fluctuating perturbations with backaction-evading oscillator variables. Physical Review A, 106(2), Article 022613. https://doi.org/10.1103/PhysRevA.106.022613

Andersen, A. L. & Mølmer, K. (2022). Quantum Nondemolition Measurements of Moving Target States. Physical Review Letters, 129(12), Article 120402. https://doi.org/10.1103/PhysRevLett.129.120402

O'Sullivan, J. D. B., Kennedy, O. W., Debnath, K., Alexander, J., Zollitsch, C. W., Šimėnas, M., Hashim, A., Thomas, C., Withington, S., Siddiqi, I., Mølmer, K. & Morton, J. J. L. (2022). Random-Access Quantum Memory Using Chirped Pulse Phase Encoding. Physical Review X, 12(4), Article 041014. https://doi.org/10.1103/PhysRevX.12.041014

Ding, D.-S., Liu, Z.-K., Shi, B.-S., Guo, G.-C., Mølmer, K. & Adams, C. S. (2022). Enhanced metrology at the critical point of a many-body Rydberg atomic system. Nature Physics, 18(12), 1447-1452. https://doi.org/10.1038/s41567-022-01777-8

Blocher, P. D., Asaad, S., Mourik, V., Johnson, M., Morello, A. & Mølmer, K. (2022). Measuring out-of-time-ordered correlation functions without reversing time evolution. Physical Review A, 106(4), Article 042429. https://doi.org/10.1103/PhysRevA.106.042429

Tidemand-Lichtenberg, P., Aagaard, M., Ashik, A. S., Pedersen, C. & Julsgaard, B. (2022). Tunable infrared upconversion module for the 1.9 to 5.5 µm range. Optics Letters, 47(23), 6189-6192. https://doi.org/10.1364/OL.477053

Cuppen, H. M., Noble, J. A., Coussan, S., Redlich, B. & Ioppolo, S. (2022). Energy Transfer and Restructuring in Amorphous Solid Water upon Consecutive Irradiation. The Journal of Physical Chemistry A, 126(47), 8859-8870. https://doi.org/10.1021/acs.jpca.2c06314

Friis, E. M., Crane, P. R., Pedersen, K. R., Mendes, M. M. & Kvacek, J. (2022). The Early Cretaceous mesofossil flora of Catefica, Portugal: angiosperms. Fossil Imprint, 78(2), 341–424. https://doi.org/10.37520/fi.2022.016

Wang, B., Bonné, R., Zhang, Y., Wang, A. & Liu, W. (2022). Renewable energy driving microbial electrochemistry toward carbon neutral. Sustainable Horizons, 4, Article 100031. https://doi.org/10.1016/j.horiz.2022.100031

Rasmussen, S. E. & Zinner, N. T. (2022). Parameterized Two-Qubit Gates for Enhanced Variational Quantum Eigensolver. Annalen der Physik, 534(12), Article 2200338. https://doi.org/10.1002/andp.202200338

Rivera-Dean, J., Stammer, P., Maxwell, A. S., Lamprou, T., Tzallas, P., Lewenstein, M. & Ciappina, M. F. (2022). Light-matter entanglement after above-threshold ionization processes in atoms. Physical Review A, 106(6), Article 063705. https://doi.org/10.1103/PhysRevA.106.063705

Madsen, M. (2022). The Principles of the Flix Programming Language. In Onward! 2022 - Proceedings of the 2022 ACM SIGPLAN International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software, co-located with SPLASH 2022 (pp. 112-127). Association for Computing Machinery. https://doi.org/10.1145/3563835.3567661

Madsen, M., Starup, J. L. & Lhoták, O. (2022). Flix: A Meta Programming Language for Datalog. In Proceedings of the 4th International Workshop on the Resurgence of Datalog in Academia and Industry (Datalog-2.0 2022) (pp. 202-206). CEUR-WS.org. https://ceur-ws.org/Vol-3203/short8.pdf

Holm, H. & Jørgensen, P. (2022). The Q-shaped derived category of a ring. Journal of the London Mathematical Society, 106(4), 3263-3316. https://doi.org/10.1112/jlms.12662

Salimi, M., Javadi, A. H., Nazari, M., Bamdad, S., Tabasi, F., Parsazadegan, T., Ayene, F., Karimian, M., Gholami-Mahtaj, L., Shadnia, S., Jamaati, H., Salimi, A. & Raoufy, M. R. (2022). Nasal Air Puff Promotes Default Mode Network Activity in Mechanically Ventilated Comatose Patients: A Noninvasive Brain Stimulation Approach. Neuromodulation: Technology at the Neural Interface, 25(8), 1351-1363. https://doi.org/10.1016/j.neurom.2021.11.003

Afshar, M., Møllebjerg, A., Minero, G. A., Hollensteiner, J., Poehlein, A., Himmelbach, A., Lange, J., Meyer, R. L. & Brüggemann, H. (2022). Biofilm formation and inflammatory potential of Staphylococcus saccharolyticus: A possible cause of orthopedic implant-associated infections. Frontiers in Microbiology, 13, Article 1070201. https://doi.org/10.3389/fmicb.2022.1070201

Nielsen, H. & Andersen, C. (2022). Dommedagsuret. Aktuel Naturvidenskab, 2022(6), 42-46.

Hourfar, H., Aliakbari, F., Aqdam, S. R., Nayeri, Z., Bardania, H., Otzen, D. E. & Morshedi, D. (2023). The impact of α-synuclein aggregates on blood-brain barrier integrity in the presence of neurovascular unit cells. International Journal of Biological Macromolecules, 229, 305-320. https://doi.org/10.1016/j.ijbiomac.2022.12.134

Alijanvand, S. H., Ladefoged, L. K., Zubrienė, A., Sakalauskas, A., Christiansen, G., Dudutiene, V., Schiøtt, B., Matulis, D., Smirnovas, V. & Otzen, D. E. (2023). Inhibitory effects of fluorinated benzenesulfonamides on insulin fibrillation. International Journal of Biological Macromolecules, 227, 590-600. https://doi.org/10.1016/j.ijbiomac.2022.12.105

Musaeus, L. H., Van Mechelen, M., Caspersen, M. E. & Iversen, O. S. (2022). Empowerment through computational thinking: A literature survey. Acta Didactica Norden, 16(4), Article 1. https://doi.org/10.5617/adno.9152

Madsen, O. L. & Møller-Pedersen, B. (2022). What Object-Oriented Programming Was Supposed to Be: Two Grumpy Old Guys’ Take on Object-Oriented Programming . In Onward! 2022 - Proceedings of the 2022 ACM SIGPLAN International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software, co-located with SPLASH 2022: Proceedings of the 2022 ACM SIGPLAN International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software (pp. 220–239). Association for Computing Machinery. https://doi.org/10.1145/3563835.3568735

Olsen, J., Daugbjerg, T. S., C. Kinnaird, T., Kristiansen, S. M., Jacobsen, J. K., Parisi Presicce, C., Vitti, M. & Raja, R. (2022). Radiocarbon and OSL dating of Caesar’s Forum in Rome. Abstract from The 24th International Radiocarbon and 10th 14C and Archaeology Conference, Zürich, Switzerland. https://radiocarbon24.ethz.ch/wp-content/uploads/2022/08/A03_11.htm

Østergaard, R. H., Yan, Y., Venø, M. T., Dinesen, A., Kjaer-Sorensen, K., Oxvig, C., Rasmussen, J. T., Howard, K., Kjems, J., van Niel, G., Verweij, F. & Hayashi, Y. (2022). Extracellular Vesicle Biology Meets Zebrafish: Real-Time Visualization and RNA Profiling of Physiological Exosomes in the Bloodstream. Poster session presented at The Danish Society for Extracellular Vesicles (DSEV) 3rd Annual Symposium 2022, Roskilde, Denmark.

Mohammad-Beigi, H., Wijaya, W., Madsen, M., Hayashi, Y., Li, R., Maria Rovers, T. A., Jæger, T. C., Buell, A. K., Hougaard, A. B., Kirkensgaard, J. J. K., Westh, P., Ipsen, R. & Svensson, B. (2023). Association of caseins with β-lactoglobulin influenced by temperature and calcium ions: A multi-parameter analysis. Food Hydrocolloids, 137, Article 108373. https://doi.org/10.1016/j.foodhyd.2022.108373

Nielsen, K. H., Kragh, G. & Agergaard, T. E. (2022). Citizen science in Denmark at a critical stage: a national survey across research fields, institutions, and projects. P o S - Proceedings of Science, 418, Article 058. https://pos.sissa.it/418/058/pdf

Manolaki, P., Pastor, A., Karttunen, K., Guo, K. & Riis, T. (2022). Effects of temperature and nutrient enrichment on the Arctic moss Hygrohypnella ochracea growth and productivity. Polar Biology, 45(8), 1415-1425. https://doi.org/10.1007/s00300-022-03077-6

Wu, N., Guo, K., Suren, A. M. & Riis, T. (2023). Lake morphological characteristics and climatic factors affect long-term trends of phytoplankton community in the Rotorua Te Arawa lakes, New Zealand during 23 years observation. Water Research, 229, Article 119469. https://doi.org/10.1016/j.watres.2022.119469

Sand-Jensen, K., Riis, T., Kjær, J. E. & Martinsen, K. T. (2022). Stream-lake connectivity is an important control of fluvial CO2 concentrations and emissions in catchments. Earth and Space Science, 9(12), Article e2022EA002664. https://doi.org/10.1029/2022EA002664

Allen, P., Bain, D. R., Bridgland, D. R., Buisson, P., Buylaert, J. P., Bynoe, R., George, W. H., Haggart, B. A., Horne, D. J., Littlewood, E. M., Lord, A. R., March, A. C., Mercer, I., Mercer, R., Murray, A. S., Penkman, K. E. H., Preece, R. C., Ratford, J., Schreve, D. C. ... White, T. S. (2022). Mid-Late Quaternary Fluvial Archives near the Margin of the MIS 12 Glaciation in Southern East Anglia, UK: Amalgamation of Multi-Disciplinary and Citizen-Science Data Sources. Quaternary, 5(3), Article 37. https://doi.org/10.3390/quat5030037

Panyadee, P., Meunrew, J., Balslev, H. & Inta, A. (2022). Ethnobotany and Ecosystem Services in a Tidal Forest in Thailand. Sustainability, 14(10), Article 6322. https://doi.org/10.3390/su14106322

Kass, M. A., Grombacher, D., Griffiths, M., Vang, M. Ø., Liu, L. & Larsen, J. J. (2022). A steady-state approach to surface nuclear magnetic resonance. In Proceedings of the Symposium on the Application of Geophyics to Engineering and Environmental Problems, SAGEEP (pp. 54). J and N Group, Ltd.. https://www.eegs.org/assets/docs/Symposium/2022SAGEEP/AbstractsbyAuthor/Kass%2C%20A%20STEADY-STATE%20APPROACH%20TO%20SURFACE%20NUCLEAR%20MAGNETIC%20RESONANCE%20-%20SAGEEP%202022%20-%20205367449.pdf

Liu, L., Griffiths, M. P., Vang, M., Grombacher, D. J. & Larsen, J. J. (2021). Is it redundant to use model-based subtraction together with the reference noise cancellation? In 27th European Meeting of Environmental and Engineering Geophysics, Held at Near Surface Geoscience Conference and Exhibition 2021, NSG 2021 EAGE Publishing BV. https://doi.org/10.3997/2214-4609.202120108

Zev, S., Ringel, M., Driller, R., Loll, B., Brück, T. & Major, D. T. (2022). Understanding the competing pathways leading to hydropyrene and isoelisabethatriene. Beilstein Journal of Organic Chemistry, 18, 972-978. https://doi.org/10.3762/bjoc.18.97

Larsen, J. J., Lévy, L. & Asif, M. R. (2022). Removal of powerline noise in geophysical data sets with a scientific machine-learning based approach. IEEE Transactions on Geoscience and Remote Sensing, 60, Article 5923410. https://doi.org/10.1109/TGRS.2022.3223737

Marcussen, M. L. & Albrecht, S. H. (2022). The BANANA Project. VI. Close Double Stars are Well Aligned with Noticeable Exceptions: Results from an Ensemble Study Using Apsidal Motion and Rossiter-McLaughlin Measurements. Astrophysical Journal, 933(2), Article 227. https://doi.org/10.3847/1538-4357/ac75c2

Cunningham, A. C., Buylaert, J. P. & Murray, A. S. (2022). Attenuation of beta radiation in granular matrices: implications for trapped-charge dating. Geochronology, 4(2), 517-531. https://doi.org/10.5194/gchron-4-517-2022

Kveiborg, J. & Olsen, J. (2023). Targeted radiocarbon dating of animal bones from ritual wetland depositions in early Iron Age (Denmark). Journal of Archaeological Science: Reports, 47, Article 103766. https://doi.org/10.1016/j.jasrep.2022.103766

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