Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Asquini, L., Landoni, M., Young, D., Marty, L., Smartt, S. J., Campana, S., Claudi, R., Schipani, P., Aliverti, M., Battaini, F., Baruffolo, A., Ben-Ami, S., Bianco, A., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O., Kuncarayakti, H. ... Ventura, H. (2022). Dynamic scheduling for SOXS instrument: Environment, algorithms and development. In J. Ibsen & G. Chiozzi (Eds.), Software and Cyberinfrastructure for Astronomy VII Article 121890A SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2628890

Phillips, M. M., Ashall, C., Burns, C. R., Contreras, C., Galbany, L., Hoeflich, P., Hsiao, E. Y., Morrell, N., Nugent, P., Uddin, S. A., Baron, E., Freedman, W. L., Harris, C. E., Krisciunas, K., Kumar, S., Lu, J., Persson, S. E., Piro, A. L., Polin, A. ... Suntzeff, N. B. (2022). The Absolute Magnitudes of 1991T-like Supernovae ^*^* This paper includes data gathered with the 6.5 meter Magellan telescopes at Las Campanas Observatory, Chile. Astrophysical Journal, 938(1), Article 47. https://doi.org/10.3847/1538-4357/ac9305

Sai, H., Wang, X., Elias-Rosa, N., Yang, Y., Zhang, J., Lin, W., Mo, J., Piro, A. L., Zeng, X., Andrea, R., Brown, P., Burns, C. R., Cai, Y., Fiore, A., Hsiao, E. Y., Isern, J., Itagaki, K., Li, W., Li, Z. ... Zhang, X. (2022). Observations of the very young Type Ia Supernova 2019np with early-excess emission. Monthly Notices of the Royal Astronomical Society, 514(3), 3541-3558. https://doi.org/10.1093/mnras/stac1525

Landoni, M., Marty, L., Young, D., Asquini, L., Smartt, S. J., Campana, S., Claudi, R., Schipani, P., Aliverti, M., Battaini, F., Baruffolo, A., Ben-Ami, S., Biondi, F., Bianco, A., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Genoni, M. ... Stritzinger, M. (2022). The quality check system architecture for Son-Of-X-Shooter SOXS. In J. Ibsen & G. Chiozzi (Eds.), Software and Cyberinfrastructure for Astronomy VII SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2630049

Young, D. R., Landoni, M., Smartt, S. J., Campana, S., D'Avanzo, P., Claudi, R., Schipani, P., Aliverti, M., Baruffolo, A., Ben-Ami, S., Capasso, G., Cosentino, R., D'Alessio, F., Hershko, O., Kuncarayakti, H., Munari, M., Pignata, G., Radhakrishnan, K., Rubin, A. ... Pérez Ventura, H. (2022). The Son-Of-X-Shooter (SOXS) data-reduction pipeline. In J. Ibsen & G. Chiozzi (Eds.), Software and Cyberinfrastructure for Astronomy VII Article 121891I SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2629282

Pastorello, A., Valerin, G., Fraser, M., Reguitti, A., Elias-Rosa, N., Filippenko, A. V., Rojas-Bravo, C., Tartaglia, L., Reynolds, T. M., Valenti, S., Andrews, J. E., Ashall, C., Bostroem, K. A., Brink, T. G., Burke, J., Cappellaro, E., Coulter, D. A., Dastidar, R., Davis, K. W. ... Magnier, E. (2022). Panchromatic evolution of three luminous red novae: Forbidden hugs in pandemic times -- IV. ArXiv. https://doi.org/10.48550/arXiv.2208.02782

Pastorello, A., Fraser, M., Filippenko, A. V., Reguitti, A., Patra, K. C., Goranskij, V. P., Barsukova, E. A., Brink, T. G., Elias-Rosa, N., Stevance, H. F., Zheng, W., Atapin, K. E., Benetti, S., Boer, T. J. L. D., Bose, S., Burke, J., Byrne, R., Cappellaro, E., Chambers, K. C. ... Tartaglia, L. (2022). Observations of the luminous red nova AT 2021biy in the nearby galaxy NGC 4631. Astronomy & Astrophysics (A&A), 667, Article A4. https://doi.org/10.1051/0004-6361/202244393

Kumar, S., Hsiao, E. Y., Ashall, C., Phillips, M. M., Morrell, N., Hoeflich, P., Burns, C. R., Galbany, L., Baron, E., Contreras, C., Davis, S., Diamond, T., Forster, F., Graham, M. L., Karamehmetoglu, E., Kirshner, R. P., Koribalski, B., Krisciunas, K., Lu, J. ... Uddin, S. A. (2023). Near-infrared and Optical Nebular-phase Spectra of Type Ia Supernovae SN 2013aa and SN 2017cbv in NGC 5643. https://doi.org/10.3847/1538-4357/acad73

Kwok, L. A., Jha, S. W., Temim, T., Fox, O. D., Larison, C., Camacho-Neves, Y., Newman, M. J. B., Pierel, J. D. R., Foley, R. J., Andrews, J. E., Badenes, C., Barna, B., Bostroem, K. A., Deckers, M., Flors, A., Garnavich, P., Graham, M. L., Graur, O., Hosseinzadeh, G. ... Wang, L. (2022). A JWST Near- and Mid-Infrared Nebular Spectrum of the Type Ia Supernova 2021aefx.

Holoien, T. W. .-S., Kochanek, C. S., Stanek, K. Z., Vallely, P. J., Shappee, B. J., Prieto, J. L., Pessi, T., Jayasinghe, T., Brimacombe, J., Bersier, D., Aydi, E., Basinger, C., Beacom, J. F., Bose, S., Brown, J. S., Chen, P., Clocchiatti, A., Desai, D. D., Dong, S. ... Wiethoff, W. S. (2022). The ASAS-SN Bright Supernova Catalog -- V. 2018-2020. https://doi.org/10.48550/arXiv.2210.06492

Karamehmetoglu, E., Sollerman, J., Taddia, F., Barbarino, C., Feindt, U., Fremling, C., Gal-Yam, A., Kasliwal, M. M., Petrushevska, T., Schulze, S., Stritzinger, M. D. & Zapartas, E. (2023). A population of Type Ibc supernovae with massive progenitors; broad lightcurves not uncommon in (i)PTF. https://doi.org/10.1051/0004-6361/202245231

Frieman, J. A., Bassett, B., Choi, C., Cinabro, D., DeJongh, F., Depoy, D. L., Dilday, B., Doi, M., Garnavich, P. M., Hogan, C. J., Holtzman, J., Im, M., Jha, S., Kessler, R., Konishi, K., Lampeitl, H., Marriner, J., Marshall, J. L., McGinnis, D. ... York, D. (2007). The Sloan Digital Sky Survey-II Supernova Survey: Technical Summary. The Astronomical Journal. https://doi.org/10.1088/0004-6256/135/1/338

SOXS (2022). Dynamic scheduling for SOXS instrument: environment, algorithms and development.

Bodin, S., Fantasia, A., Krencker, F.-N. F., Nebsbjerg, B. R., Christiansen, L. & Andrieu, S. (2023). More gaps than record! A new look at the Pliensbachian/Toarcian boundary event guided by coupled chemo-sequence stratigraphy. Palaeogeography, Palaeoclimatology, Palaeoecology, 610, Article 111344. https://doi.org/10.1016/j.palaeo.2022.111344

Amin, H., Marshall, I. P. G., Bertelsen, R. J., Wouters, I. M., Schlünssen, V., Sigsgaard, T. & Šantl-Temkiv, T. (2023). Optimization of bacterial DNA and endotoxin extraction from settled airborne dust. Science of the Total Environment, 857(Part 2), Article 159455. https://doi.org/10.1016/j.scitotenv.2022.159455

Childres, I., Qi, Y., Sadi, M. A., Ribeiro, J. F., Cao, H. & Chen, Y. P. (2022). Combined Raman Spectroscopy and Magneto-Transport Measurements in Disordered Graphene: Correlating Raman D Band and Weak Localization Features. Coatings, 12(8), Article 1137. https://doi.org/10.3390/coatings12081137

Borup, K., Kidmose, P., Phan, H. & Mikkelsen, K. (2023). Automatic sleep scoring using patient-specific ensemble models and knowledge distillation for ear-EEG data. Biomedical Signal Processing and Control, 81, Article 104496. https://doi.org/10.1016/j.bspc.2022.104496

Esposito, C., Nijman, T. P. A., Veraart, A. J., Audet, J., Levi, E. E., Lauridsen, T. L. & Davidson, T. A. (2023). Activity and abundance of methane-oxidizing bacteria on plants in experimental lakes subjected to different nutrient and warming treatments. Aquatic Botany, 185, Article 103610. https://doi.org/10.1016/j.aquabot.2022.103610

Sampedro Vallina, N., McRae, E. K. S., Geary, C. & Andersen, E. S. (2023). An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly. Small (Weinheim an der Bergstrasse, Germany), 19(13), e2204651. Article 2204651. https://doi.org/10.1002/smll.202204651

Arndal, M. F. & Topp-Jørgensen, E. (2020). INTERACT Station catalogue 2020. (Third ed.) Aarhus University, DCE - Danish Centre for Environment and Energy.

Rasch, M., Topp-Jørgensen, E., Fugmann, G., Skancke Hansen, F. & Arndal, M. F. (2019). INTERACT Practical field guide. (First ed.) Aarhus University, DCE - Danish Centre for Environment and Energy.

Abram, D., Damgård, I., Orlandi, C. & Scholl, P. (2022). An Algebraic Framework for Silent Preprocessing with Trustless Setup and Active Security. In Y. Dodis & T. Shrimpton (Eds.), Advances in Cryptology – CRYPTO 2022 (pp. 421-452). Springer. https://doi.org/10.1007/978-3-031-15985-5_15

Campanelli, M., Engelmann, F. & Orlandi, C. (2022). Zero-Knowledge for Homomorphic Key-Value Commitments with Applications to Privacy-Preserving Ledgers. In C. Galdi & S. Jarecki (Eds.), Security and Cryptography for Networks (pp. 761-784). Springer. https://doi.org/10.1007/978-3-031-14791-3_33

Boschini, C., Damgård, I. & Orlandi, C. (2022). On Access Control Encryption Without Sanitization. In C. Galdi & S. Jarecki (Eds.), Security and Cryptography for Networks. SCN 2022 (pp. 220-243). Springer. https://doi.org/10.1007/978-3-031-14791-3_10

Abram, D., Nof, A., Orlandi, C., Scholl, P. & Shlomovits, O. (2022). Low-Bandwidth Threshold ECDSA via Pseudorandom Correlation Generators. In 2022 IEEE Symposium on Security and Privacy (SP) (pp. 2554-2572). IEEE. https://doi.org/10.1109/SP46214.2022.9833559

Gausas, L., Jackstell, R., Skrydstrup, T. & Beller, M. (2022). Toward a Practical Catalyst for Convenient Deaminative Hydrogenation of Amides under Mild Conditions. ACS Sustainable Chemistry and Engineering, 10(48), 16046-16054. https://doi.org/10.1021/acssuschemeng.2c05802

Kronbo, C. H., Ehrenreich-Petersen, E., Ottesen, M., Menescardi, F., Ceresoli, D. & Bremholm, M. (2022). High-Pressure, High-Temperature Studies of Phase Transitions in SrOsO₃ Discovery of a Post-Perovskite. Inorganic Chemistry, 61(48), 19088-19096. https://doi.org/10.1021/acs.inorgchem.2c02471

Matt, C., Nielsen, J. B. & Thomsen, S. E. (2022). Formalizing Delayed Adaptive Corruptions and the Security of Flooding Networks. In Advances in Cryptology – CRYPTO 2022 - 42nd Annual International Cryptology Conference, CRYPTO 2022, Proceedings: 42nd Annual International Cryptology Conference, CRYPTO 2022, Procerdings (pp. 400-430). Springer, Cham. https://doi.org/10.1007/978-3-031-15979-4_14

Liu-Zhang, C.-D., Matt, C. & Thomsen, S. E. (2022). Asymptotically Optimal Message Dissemination with Applications to Blockchains. Cryptology ePrint Archive. https://eprint.iacr.org/2022/1723

Gjelstrup, C. V. B., Sejr, M. K., de Steur, L., Christiansen, J. S., Granskog, M. A., Koch, B. P., Møller, E. F., Winding, M. H. S. & Stedmon, C. A. (2022). Vertical redistribution of principle water masses on the Northeast Greenland Shelf. Nature Communications, 13(1), Article 7660. https://doi.org/10.1038/s41467-022-35413-z

Singh, R. K., Vader, A., Mundy, C. J., Søreide, J. E., Iken, K., Dunton, K. H., Castro de la Guardia, L., Sejr, M. K. & Bélanger, S. (2022). Satellite-Derived Photosynthetically Available Radiation at the Coastal Arctic Seafloor. Remote Sensing, 14(20), Article 5180. https://doi.org/10.3390/rs14205180

Skitsas, K., Orłowski, K., Hermanns, J., Mottin, D. & Karras, P. (2023). Comprehensive Evaluation of Algorithms for Unrestricted Graph Alignment. In Proceedings 26th International Conference on Extending Database Technology (EDBT 2023) (pp. 260-272). openproceedings.org. https://doi.org/10.48786/edbt.2023.21

Lissandrini, M., Mottin, D., Hose, K. & Pedersen, T. B. (2022). Knowledge Graph Exploration Systems: are we lost?. Paper presented at 12th Annual Conference on
Innovative Data Systems Research (CIDR ’22), Chaminade, United States. https://dblp.org/db/conf/cidr/cidr2022.html

Draganov, A., Berry, T., Jørgensen, J. R., Nellemann, K. S., Assent, I. & Mottin, D. (2022). GiDR-DUN; Gradient Dimensionality Reduction -- Differences and Unification. https://doi.org/10.48550/arXiv.2206.09689

Moradan, A., Draganov, A., Mottin, D. & Assent, I. (2021). UCoDe: Unified Community Detection with Graph Convolutional Networks. ArXiv. https://doi.org/10.48550/arXiv.2112.14822

Sutjaritjai, N., Panyadee, P., Phumthum, M., Inta, A. & Balslev, H. (2022). High Diversity of Medicinal Uses of Thai Legumes (Fabaceae) and Their Potential in Public Herbal Medicine. Diversity, 14(8), Article 588. https://doi.org/10.3390/d14080588

Planas, X. B., Ordóñez, A., Lewenstein, M. & Maxwell, A. S. (2022). Ultrafast Imaging of Molecular Chirality with Photoelectron Vortices. Physical Review Letters, 129(23), Article 233201. https://doi.org/10.1103/PhysRevLett.129.233201

Zhou, Q., Thøgersen, M. K., Rezayee, N. M., Jørgensen, K. A. & Houk, K. N. (2022). Ambimodal Bispericyclic [6 + 4]/[4 + 6] Transition State Competes with Diradical Pathways in the Cycloheptatriene Dimerization: Dynamics and Experimental Characterization of Thermal Dimers. Journal of the American Chemical Society, 144(48), 22251-22261. https://doi.org/10.1021/jacs.2c10407

Veileborg, O. H., Saioc, G.-V. & Møller, A. (2022). Detecting Blocking Errors in Go Programs using Localized Abstract Interpretation. In iWOAR 2022 - 7th International Workshop on Sensor-Based Activity Recognition and Artificial Intelligence, Proceedings (pp. 1-12). Article 32 Association for Computing Machinery. https://doi.org/10.1145/3551349.3561154

Pikirayi, I., Sulas, F., Nxumalo, B., Sagiya, M. E., Stott, D., Kristiansen, S. M., Chirikure, S. & Musindo, T. (2022). Climate-smart harvesting and storing of water: The legacy of dhaka pits at Great Zimbabwe. Anthropocene, 40, Article 100357. https://doi.org/10.1016/j.ancene.2022.100357

Friis, E. M., Crane, P. R. & Pedersen, K. R. (2019). Geminispermum, an Early Cretaceous (early-middle Albian) cupulate unit from the angiosperm-dominated Puddledock flora of eastern North America. Acta Palaeobotanica, 59(2), 229-239. https://doi.org/10.2478/acpa-2019-0020

Friis, E. M., Crane, P. R. & Pedersen, K. R. (2019). The Early Cretaceous Mesofossil Flora of Torres Vedras (Ne of Forte da Forca), Portugal: A Palaeofloristic Analysis of an Early Angiosperm Community. Fossil Imprint, 75(2), 153-257. https://doi.org/10.2478/if-2019-0013

Ahrenfeldt, J., Christensen, D. S., Sokač, M., Kisistók, J., McGranahan, N. & Birkbak, N. J. (2022). Computational Analysis Reveals the Temporal Acquisition of Pathway Alterations during the Evolution of Cancer. Cancers, 14(23), Article 5817. https://doi.org/10.3390/cancers14235817

Tzortzakakis, A. F., Petrosyan, D., Fleischhauer, M. & Mølmer, K. (2022). Microscopic dynamics and an effective Landau-Zener transition in the quasiadiabatic preparation of spatially ordered states of Rydberg excitations. Physical Review A, 106(6), Article 063302. https://doi.org/10.1103/PhysRevA.106.063302

Busato, S., Gordon, M., Chaudhari, M., Thorsgaard Jensen, I., Akyol, T. Y., Andersen, S. U. & Williams, C. (2023). Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies. Current Opinion in Plant Biology, 71, Article 102326. https://doi.org/10.1016/j.pbi.2022.102326

Mølmer, K. (2021). More speed out of the quantum gate: SQUEEZED VIBRATIONS. Nature Physics, 17(8), 876-877. https://doi.org/10.1038/s41567-021-01195-2

Jensen, J. H. M. & Mølmer, K. (2022). Gaussian theory for estimating fluctuating perturbations with backaction-evading oscillator variables. Physical Review A, 106(2), Article 022613. https://doi.org/10.1103/PhysRevA.106.022613

Andersen, A. L. & Mølmer, K. (2022). Quantum Nondemolition Measurements of Moving Target States. Physical Review Letters, 129(12), Article 120402. https://doi.org/10.1103/PhysRevLett.129.120402

O'Sullivan, J. D. B., Kennedy, O. W., Debnath, K., Alexander, J., Zollitsch, C. W., Šimėnas, M., Hashim, A., Thomas, C., Withington, S., Siddiqi, I., Mølmer, K. & Morton, J. J. L. (2022). Random-Access Quantum Memory Using Chirped Pulse Phase Encoding. Physical Review X, 12(4), Article 041014. https://doi.org/10.1103/PhysRevX.12.041014

Ding, D.-S., Liu, Z.-K., Shi, B.-S., Guo, G.-C., Mølmer, K. & Adams, C. S. (2022). Enhanced metrology at the critical point of a many-body Rydberg atomic system. Nature Physics, 18(12), 1447-1452. https://doi.org/10.1038/s41567-022-01777-8

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