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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Tabur, V., Bedding, T. R., Kiss, L. L., Moon, T. T., Szeidl, B. & Kjeldsen, H. (2009). Long-term photometry and periods for 261 nearby pulsating M giants. Royal Astronomical Society. Monthly Notices, 400(4), 1945-1961. https://doi.org/10.1111/j.1365-2966.2009.15588.x

Rodpothong, P., Sullivan, J. T., Songsrirote, K., Sumpton, D., Cheung, K. W. J.-T., Thomas-Oates, J., Radutoiu, S., Stougaard, J. & Ronson, C. W. (2009). Nodulation Gene Mutants of Mesorhizobium loti R7A-nodZ and nolL Mutants Have Host-Specific Phenotypes on Lotus spp. Molecular plant-microbe interactions, 22(12), 1546-54. https://doi.org/10.1094/MPMI-22-12-1546

Demontis, D., Pertoldi, C., Loeschcke, V., Mikkelsen, K., Axelsson, T. & Kristensen, T. N. (2009). Efficiency of selection, as measured by single nucleotide polymorphism variation, is dependent on inbreeding rate in Drosophila melanogaster. Molecular Ecology, 18(22), 4551-63. https://doi.org/10.1111/j.1365-294X.2009.04366.x

Buitenhuis, B., Hedegaard, J., Janss, L. & Sorensen, P. (2009). Differentially Expressed Genes for Aggressive Pecking Behaviour in Laying Hens. BMC Genomics, 10(544). https://doi.org/10.1186/1471-2164-10-544

Lo, S.-K., Cheong, L.-Z., Ariffin, N., Tan, C.-P., Long, K., Yusoff, M. S. A. & Lai, O.-M. (2007). Diacylglycerol and triacylglycerol as responses in a dual response surface-optimized process for diacylglycerol production by lipase-catalyzed esterification in a pilot-packed enzyme reactor. Journal of Agricultural and Food Chemistry, 55(14), 5595-5603.

Greilich, S., Grzanka, L., Hahn, U., Kiderlen, M., Bassler, N., Andersen, C. E. & Jäkel, O. (2009). Amorphous track models: a numerical comparison study. Poster session presented at Neutron and Ion Dosimetry Symposium (NEUDOS-11), Cape Town, South Africa.

Toft, S. (2009). Leddyrenes Biologi.

Schleimann, M. H., Møller, J. M., Kofod-Olsen, E. & Höllsberg, P. (2009). Direct Repeat 6 from human herpesvirus-6B encodes a nuclear protein that forms a complex with the viral DNA processivity factor p41. PLoS One, 4(10), e7457. https://doi.org/10.1371/journal.pone.0007457

Brabrand, C., Giegerich, R. & Møller, A. (2010). Analyzing Ambiguity of Context-Free Grammars. Science of Computer Programming, 75(3), 176-191. https://doi.org/10.1016/j.scico.2009.11.002

Das, T. K., Weber, R. E., Dewilde, S., Wittenberg, J. B., Wittenberg, B. A., Yamauchi, K., Van Hauwaert, M. L., Moens, L. & Rousseau, D. L. (2000). Ligand binding in the ferric and ferrous states of Paramecium hemoglobin. Biochemistry, 39(46), 14330-40.

Hourdez, S., Lallier, F. H., De Cian, M. C., Green, B. N., Weber, R. E. & Toulmond, A. (2000). Gas transfer system in Alvinella pompejana (Annelida polychaeta, Terebellida): functional properties of intracellular and extracellular hemoglobins. Physiological and Biochemical Zoology, 73(3), 365-73. https://doi.org/10.1086/316755

Weber, R. E., Fago, A., Val, A. L., Bang, A., Van Hauwaert, M. L., Dewilde, S., Zal, F. & Moens, L. (2000). Isohemoglobin differentiation in the bimodal-breathing amazon catfish Hoplosternum littorale. Journal of Biological Chemistry, 275(23), 17297-305. https://doi.org/10.1074/jbc.M001209200

Ziolkowski, M., Jansik, B., Jørgensen, P. & Olsen, J. (2009). Maximum locality in occupied and virtual orbital spaces using a least change strategy. Journal of Chemical Physics, 131, 124112.

Zheng, T., Brittain, T., Watmough, N. J. & Weber, R. E. (1999). The role of amino acid alpha38 in the control of oxygen binding to human adult and embryonic haemoglobin Portland. Biochemical Journal, 343 Pt 3, 681-5.

Kuchumov, A. R., Taveau, J. C., Lamy, J. N., Wall, J. S., Weber, R. E. & Vinogradov, S. N. (1999). The role of linkers in the reassembly of the 3.6 MDa hexagonal bilayer hemoglobin from Lumbricus terrestris. Journal of Molecular Biology, 289(5), 1361-74. https://doi.org/10.1006/jmbi.1999.2825

Seidler, P., Gras, E. M. & Christiansen, O. (2009). Vibrational coupled cluster theory with full two-mode and approximate three-mode couplings: The VCC[2pt3] model. Journal of Chemical Physics, 131, 034115.

Rashid, A. K. & Weber, R. E. (1999). Functional differentiation in trematode hemoglobin isoforms. FEBS journal, 260(3), 717-25.

Hourdez, S., Lallier, F. H., Martin-Jézéquel, V., Weber, R. E. & Toulmond, A. (1999). Characterization and functional properties of the extracellular coelomic hemoglobins from the deep-sea, hydrothermal vent scaleworm Branchipolynoe symmytilida. Proteins: Structure, Function, and Bioinformatics, 34(4), 435-42.

Bugge, J. & Weber, R. E. (1999). Oxygen binding and its allosteric control in hemoglobin of the pulmonate snail, Biomphalaria glabrata. American Journal of Physiology (Consolidated), 276(2 Pt 2), R347-56.

Gyorffy, W., Seidler, P. & Christiansen, O. (2009). Solving the eigenvalue equations of correlated vibrational structure methods: Preconditioning and targeting strategies. Journal of Chemical Physics, 131, 024108.

Nielsen, K. H. (2009). Når forskningsindikatorer bedømmer forskningen. Videnskab.dk.

Nielsen, K. H. (2009). Lær af de russiske forandringer. Videnskab.dk.

Jensen, F. B., Jakobsen, M. H. & Weber, R. E. (1998). Interaction between haemoglobin and synthetic peptides of the N-terminal cytoplasmic fragment of trout band 3 (AE1) protein. Journal of Experimental Biology, 201(Pt 19), 2685-90.

Brauner, C. J. & Weber, R. E. (1998). Hydrogen ion titrations of the anodic and cathodic haemoglobin components of the European eel Anguilla anguilla. Journal of Experimental Biology, 201(Pt 17), 2507-14.

Dewilde, S., Winnepenninckx, B., Arndt, M. H., Nascimento, D. G., Santoro, M. M., Knight, M., Miller, A. N., Kerlavage, A. R., Geoghagen, N., Van Marck, E., Liu, L. X., Weber, R. E. & Moens, L. (1998). Characterization of the myoglobin and its coding gene of the mollusc Biomphalaria glabrata. Journal of Biological Chemistry, 273(22), 13583-92.

Nielsen, K. H. (2010). We Have Never Been Scientists. Annals of Science, 67(4), 561-567. https://doi.org/10.1080/00033790902788055

Kleinschmidt, T. & Weber, R. E. (1998). Primary structures of Arenicola marina isomyoglobins: molecular basis for functional heterogeneity. BBA General Subjects, 1383(1), 55-62.

Brittain, T., Hofmann, O. M., Watmough, N. J., Greenwood, C. & Weber, R. E. (1997). A two-state analysis of co-operative oxygen binding in the three human embryonic haemoglobins. Biochemical Journal, 326 ( Pt 2), 299-303.

Fago, A., Bendixen, E., Malte, H. & Weber, R. E. (1997). The anodic hemoglobin of Anguilla anguilla. Molecular basis for allosteric effects in a root-effect hemoglobin. Journal of Biological Chemistry, 272(25), 15628-35.

Bardgard, A., Fago, A., Malte, H. & Weber, R. E. (1997). Oxygen binding and aggregation of hemoglobin from the common European frog, Rana temporaria. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 117(2), 225-31.

Lamy, J., Green, B., Toulmond, A., Wall, J., Weber, R. & Vinogradov, S. (1996). Giant Hexagonal Bilayer Hemoglobins. Chemical Reviews, 96(8), 3113-3124.

Krebs, A., Kuchumov, A. R., Sharma, P. K., Braswell, E. H., Zipper, P., Weber, R. E., Chottard, G. & Vinogradov, S. N. (1996). Molecular shape, dissociation, and oxygen binding of the dodecamer subunit of Lumbricus terrestris hemoglobin. Journal of Biological Chemistry, 271(31), 18695-704.

Tame, J. R., Wilson, J. C. & Weber, R. E. (1996). The crystal structures of trout Hb I in the deoxy and carbonmonoxy forms. Journal of Molecular Biology, 259(4), 749-60. https://doi.org/10.1006/jmbi.1996.0355

Thorsteinsson, M. V., Bevan, D. R., Ebel, R. E., Weber, R. E. & Potts, M. (1996). Spectroscopical and functional characterization of the hemoglobin of Nostoc commune (UTEX 584 (Cyanobacterial). BBA General Subjects, 1292(1), 133-9.

Feuerlein, R. J. & Weber, R. E. (1996). Oxygen equilibria of cathodic eel hemoglobin analysed in terms of the MWC model and Adair's successive oxygenation theory. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 165(8), 597-606.

Fago, A., Carratore, V., di Prisco, G., Feuerlein, R. J., Sottrup-Jensen, L. & Weber, R. E. (1995). The cathodic hemoglobin of Anguilla anguilla. Amino acid sequence and oxygen equilibria of a reverse Bohr effect hemoglobin with high oxygen affinity and high phosphate sensitivity. Journal of Biological Chemistry, 270(32), 18897-902.

Fago, A. & Weber, R. E. (1995). The hemoglobin system of the hagfish Myxine glutinosa: aggregation state and functional properties. BBA General Subjects, 1249(1), 109-15.

Weber, R. E., Böning, D., Fago, A., Schmidt, W. & Correa, R. (1994). Hemoglobins from Plasmodium-infected rat erythrocytes: functional and molecular characteristics. Blood, 84(2), 638-42.

Qvist, J., Hurford, W. E., Park, Y. S., Radermacher, P., Falke, K. J., Ahn, D. W., Guyton, G. P., Stanek, K. S., Hong, S. K. & Weber, R. E. (1993). Arterial blood gas tensions during breath-hold diving in the Korean ama. Journal of Applied Physiology, 75(1), 285-93.

Zafar, R. S., Weber, R. E., Sharma, P. K., Vinogradov, S. N. & Walz, D. A. (1993). Purification and characterization of recombinant polymeric hemoglobin P1 of Glycera dibranchiata. Protein Expression and Purification, 4(6), 547-51. https://doi.org/10.1006/prep.1993.1072

Weber, R. E. (1992). Use of ionic and zwitterionic (Tris/BisTris and HEPES) buffers in studies on hemoglobin function. Journal of Applied Physiology, 72(4), 1611-5.

Piccinini, M., Kleinschmidt, T., Gorr, T., Weber, R. E., Künzle, H. & Braunitzer, G. (1991). Primary structure and oxygen-binding properties of the hemoglobin from the lesser hedgehog tenrec (Echinops telfairi, Zalambdodonta). Evidence for phylogenetic isolation. Biological Chemistry Hoppe-Seyler , 372(11), 975-89.

Spicer, J. I. & Weber, R. E. (1991). Respiratory impairment in crustaceans and molluscs due to exposure to heavy metals. Comparative Biochemistry and Physiology - Part C: Toxicology & Pharmacology, 100(3), 339-42.

Jessen, T. H., Weber, R. E., Fermi, G., Tame, J. & Braunitzer, G. (1991). Adaptation of bird hemoglobins to high altitudes: demonstration of molecular mechanism by protein engineering. Proceedings of the National Academy of Sciences (PNAS), 88(15), 6519-22.

Dodson, G. G., Richard, V. R., Tolley, S. P., Waller, D. A. & Weber, R. E. (1990). Crystallization of the rainbow trout (Salmo gairdneri) haemoglobin IV. Journal of Molecular Biology, 211(4), 691-2.

Varona, L. & Sorensen, D. (2010). A Genetic Analysis of Mortality in Pigs. Genetics, 184(1), 277-284. https://doi.org/10.1534/genetics.109.110759

Julsgaard, B., Lu, Y.-W., Balling, P. & Nylandsted Larsen, A. (2009). Thermalization of exciton states in silicon nanocrystals. Applied Physics Letters, 95, 183107. https://doi.org/10.1063/1.3251783

Nielsen, J., Pedersen, C. S. & Hein, J. (2009). Investigation of a simple heuristic improving the speed of statistical alignments. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

Simonsen, M., Mailund, T. & Pedersen, C. S. (2009). Building very large neighbour-joining trees. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

Liboriussen, P., Pedersen, B. P., Ifrim, G., Nissen, P. & Pedersen, C. S. (2009). Automatic classification of P-Type ATPases using SLR. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

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Anne Kirstine Mehlsen