Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Holm, T. E., Tougaard, J., Petersen, I. K., Balle, J. D., Dahl, K., Teilmann, J., Hermannsen, L., Kyhn, L. A., Sveegaard, S., Josefson, A. B., Nielsen, R. D., Therkildsen, O. R., Laursen, K., Wind, P., Søgaard, B., Galatius, A., Stjernholm, M. & Juul, M. N., (2015). Screeninger 2013 - 2015, No. 13685, 338 p., Oct 08, 2015. Notat fra DCE - Nationalt Center for Miljø og Energi (2011-2019)

Arnarson, L., Rasmussen, S. B., Falsig, H., Lauritsen, J. V. & Moses, P. G. (2015). Coexistence of Square Pyramidal Structures of Oxo Vanadium (+5) and (+4) Species over Low-Coverage VO_X/TiO₂ (101) and (001) Anatase Catalysts. The Journal of Physical Chemistry Part C, 119(41), 23445-23452. https://doi.org/10.1021/acs.jpcc.5b06132

Stockett, M. H. & Nielsen, S. B. (2016). Transition energies of benzoquinone anions are immune to symmetry breaking by a single water molecule. Physical Chemistry Chemical Physics, 18(10), 6996-7000. https://doi.org/10.1039/c5cp06095h

Stockett, M. H., Gatchell, M., Chen, T., de Ruette, N., Giacomozzi, L., Wolf, M., Schmidt, H. T., Zettergren, H. & Cederquist, H. (2015). Threshold Energies for Single-Carbon Knockout from Polycyclic Aromatic Hydrocarbons. The Journal of Physical Chemistry Letters, 6(22), 4504-4509. https://doi.org/10.1021/acs.jpclett.5b02080

Møllegaard Friborg, R., Jon Ison, Kristoffer Rapacki, Hervé Ménager, Matúš Kalaš, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael Jimenez, Nick Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Mičetić & Sebastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vařeková, Silvio C.E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen Parkinson, Peter Løngreen, Søren Brunak (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research, 44(D1), D38-D47. https://doi.org/10.1093/nar/gkv1116

Conti, D. & Madsen, T. B. (2015). Invariant torsion and G2-metrics. Complex Manifolds, 2(1), 140-167. https://doi.org/10.1515/coma-2015-0011

Bendtsen, J., Mortensen, J. & Rysgaard, S. (2015). Modelling subglacial discharge and its influence on ocean heat transport in Arctic fjords. Ocean Dynamics, 65(11), 1535-1546. https://doi.org/10.1007/s10236-015-0883-1

Zhang, Y., Lv, T., Carvalho, P. N., Arias, C. A., Chen, Z. & Brix, H. (2016). Removal of the pharmaceuticals ibuprofen and iohexol by four wetland plant species in hydroponic culture: plant uptake and microbial degradation. Environmental Science and Pollution Research, 23(3), 2890-2898. https://doi.org/10.1007/s11356-015-5552-x

Goyenola, G., Meerhoff, M., Teixeira-de Mello, F., Gonzalez Bergonzoni, I., Graeber, D., Fosalba, C., Vidal, N., Mazzeo, N., Ovesen, N. B., Jeppesen, E. & Kronvang, B. (2015). Monitoring strategies of stream phosphorus under contrasting climate-driven flow regimes. Hydrology and Earth System Sciences, 19, 4099-4111. https://doi.org/10.5194/hess-19-4099-2015

Pedersen, J. K., Fedorov, D. V., Jensen, A. S. & Zinner, N. T. (2016). Quantum few-body bound states of dipolar particles in a helical geometry. Journal of Physics B: Atomic, Molecular and Optical Physics, 49(2), Article 024002. https://doi.org/10.1088/0953-4075/49/2/024002

Vestergård, G. L. (2017). The Science Grapevine: Influence of blog information on the online media coverage of the 2010 arsenic-based life study. Journalism, 18(5), 626-644. https://doi.org/10.1177/1464884915623171

Damkjaer, M., Wang, T., Østergaard, K. H., Brøndum, E. T., Baandrup, U., Hørlyck, A., Hasenkam, J. M., Marcussen, N., Danielsen, C. C., Bertelsen, M., Grøndahl, C., Pedersen, M., Agger, P., Candy, G., Chemnitz, J., Aalkjær, C. & Bie, P. (2015). Non-traditional Models: The Giraffe Kidney from a Comparative and Evolutionary Biology Perspective. In K. A. Hyndman & T. L. Pannabecker (Eds.), Sodium and Water Homeostasis: Comparative, Evolutionary and Genetic Models (pp. 233-253). Springer. https://doi.org/10.1007/978-1-4939-3213-9

Brodersen, D. E. (2015). Structural Insights Into The Bacterial Carbon-Phosphorus Lyase Machinery. Poster session presented at Gordon Research Conference, Waterville Valley, NH, United States.

Brodersen, D. E. (2015). Structural Biology. Poster session presented at MBG årsmøde, Aarhus, Denmark.

Dudele, A., Fischer, C. W., Elfving, B., Wegener, G., Wang, T. & Lund, S. (2015). Chronic exposure to low doses of lipopolysaccharide and high-fat feeding increases body mass without affecting glucose tolerance in female rats. Physiological Reports, 3(11). https://doi.org/10.14814/phy2.12584

Trifiletti, R., Nielsen, J. B., Frederiksen, T. K. & Jakobsen, T. P. (2016). On the Complexity of Additively Homomorphic UC Commitments. In E. Kushilevitz & T. Malkin (Eds.), Theory of Cryptography - 13th International Conference, TCC 2016-A, Proceedings (Vol. 9562, pp. 542-565). Springer VS. https://doi.org/10.1007/978-3-662-49096-9

Steffensen, L. B., Poulsen, C. B., Shim, J., Bek, M., Jacobsen, K., Conover, C. A., Bentzon, J. F. & Oxvig, C. (2015). Myocardial and Peripheral Ischemia Causes an Increase in Circulating Pregnancy-Associated Plasma Protein-A in Non-atherosclerotic, Non-heparinized Pigs. Journal of Cardiovascular Translational Research, 8(9), 528-535. https://doi.org/10.1007/s12265-015-9656-y

Andersson, R., Chen, Y., Core, L., Lis, J. T., Sandelin, A. & Jensen, T. H. (2015). Human Gene Promoters Are Intrinsically Bidirectional. Molecular Cell, 60(3), 346-347. https://doi.org/10.1016/j.molcel.2015.10.015

Mohammad-Beigi, H., Shojaosadati, S. A., Marvian, A. T., Pedersen, J. N., Klausen, L. H., Christiansen, G., Pedersen, J. S., Dong, M., Morshedi, D. & Otzen, D. E. (2015). Strong interactions with polyethylenimine-coated human serum albumin nanoparticles (PEI-HSA NPs) alter α-synuclein conformation and aggregation kinetics. Nanoscale, 7, 19627-19640. https://doi.org/10.1039/c5nr05663b

Lykke-Andersen, S. & Jensen, T. H. (2015). Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes. Nature Reviews. Molecular Cell Biology, 16, 665-677. https://doi.org/10.1038/nrm4063

Pedersen, J. N. (2015). LIPROTIDES: A NEW CLASS OF PROTEIN LIPID-COMPLEXES. https://www.helmholtz-berlin.de/media/media/spezial/events/sas/2015/Programme/Abstracts/Update_14_Sept/poster_book_a4_fin_140915.pdf

Olivarius, M. & Nielsen, L. H. (2016). Triassic paleogeography of the greater eastern Norwegian-Danish Basin. Marine and Petroleum Geology, 69, 168–182. https://doi.org/10.1016/j.marpetgeo.2015.10.008

Hansen, K. C. K., Fedorov, D. V., Jensen, A. S. & Zinner, N. T. (2015). Classical crystal formation of dipoles in two dimensions. Physica Scripta, 90(12), Article 125002. https://doi.org/10.1088/0031-8949/90/12/125002

Montomoli, J., Erichsen, R., Antonsen, S., Nilsson, T. & Sørensen, H. T. (2015). Impact of preoperative serum albumin on 30-day mortality following surgery for colorectal cancer: a population-based cohort study. BMJ Open Gastroenterology, 2(1), e000047. https://doi.org/10.1136/bmjgast-2015-000047

Christensen, T. K., Baxter, A., Clausen, P., Hounisen, J. P. & Fox, A. D. (2015). Gåsebestande og flyvesikkerhed i Danmark: Forvaltning i lufthavnes sikkerhedsområder . Aarhus University, DCE - Danish Centre for Environment and Energy. Teknisk rapport fra DCE - Nationalt Center for Miljø og Energi No. 66 http://dce2.au.dk/pub/TR66.pdf

Gajdacz, M., Das, K. K., Arlt, J., Sherson, J. F. & Opatrný, T. (2015). Time-limited optimal dynamics beyond the Quantum Speed Limit. Physical Review A, 92(6), Article 062106. https://doi.org/10.1103/PhysRevA.92.062106

Jacobsen, L. M. W., Rodrigues da Fonseca, R. A., Bernatchez, L. & Hansen, M. M. (2016). Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.). Molecular Phylogenetics and Evolution, 95, 161-170. https://doi.org/10.1016/j.ympev.2015.11.008

Madsen, R. B., Sigaard Christensen, P., Houlberg, K., Lappa, E., Mørup, A. J., Klemmer, M., Olsen, E. M., Jensen, M. M., Becker, J., Iversen, B. B. & Glasius, M. (2015). Analysis of organic gas phase compounds formed by hydrothermal liquefaction of Dried Distillers Grains with Solubles. Bioresource Technology, 192, 826-830. https://doi.org/10.1016/j.biortech.2015.05.095

Zgadzaj, R., James, E. K., Kelly, S., Kawaharada, Y., de Jonge, N., Jensen, D. B., Madsen, L. H. & Radutoiu, S. (2015). A Legume Genetic Framework Controls Infection of Nodules by Symbiotic and Endophytic Bacteria. P L o S Genetics, 11(6), Article 1005280. https://doi.org/10.1371/journal.pgen.1005280

Zhukov, V. A., Borisov, A. Y., Kuznetsova, E. V., Madsen, L. H., Moffet, M. D., Ovchinnikova, E. S., Pinaev, A. G., Radutoiu, S., Rozov, S. M., Rychagova, T. S., Shtark, O. Y., Tsyganov, V. E., Voroshilova, V. A., Stougaard, J., Weeden, N. F. & Tikhonovich, I. A. (2008). GENOME SYNTENY OF PEA AND MODEL LEGUMES: FROM MUTATION THROUGH GENETIC MAPPING TO THE GENES. In FD. Dakora, SBM. Chimphango, AJ. Valentine, C. Elmerich & WE. Newton (Eds.), BIOLOGICAL NITROGEN FIXATION: TOWARDS POVERTY ALLEVIATION THROUGH SUSTAINABLE AGRICULTURE (pp. 223-224). Springer.

Nielsen, M. G., Peng, R., Offenberg, H. J. & Birkmose, D. (2016). Mating strategy of Oecophylla smaragdina (Hymenoptera: Formicidae) in northern Australia. Australian Journal of Entomology, 55(3), 261-267. https://doi.org/10.1111/aen.12182

Nielsen, K. H. (2015). Peer review. Weekendavisen, Ideer, 10.

Kraus, P. M., Mignolet, B., Baykusheva, D., Rupenyan, A., Horný, L., Penka, E. F., Grassi, G., Tolstikhin, O. I., Schneider, J., Jensen, F., Madsen, L. B., Bandrauk, A. D., Remacle, F. & Wörner , H. J. (2015). Measurement and laser control of attosecond charge migration in ionized iodoacetylene. Science, 350(6262), 790-795 . https://doi.org/10.1126/science.aab2160

Bokhorst, S., Pedersen, S. H., Brucker, L., Anisimov, O., Bjerke, J. W., Brown, R. D., Ehrich, D., Essery, R. L. H., Heilig, A., Ingvander, S., Johansson, C., Johansson, M., Svala Jónsdóttir, I., Inga, N., Luojus, K., Macelloni, G., Mariash, H., McLennan, D., Rosqvist, G. N. ... Callaghan, T. V. (2016). Changing Arctic snow cover: A review of recent developments and assessment of future needs for observations, modelling, and impacts. Ambio, 45(5), 516-537. https://doi.org/10.1007/s13280-016-0770-0

Westergaard-Nielsen, A., Lund, M., Pedersen, S. H., Schmidt, N. M., Klosterman, S., Abermann, J. & Ulf Hansen, B. (2017). Transitions in high-Arctic vegetation growth patterns and ecosystem productivity tracked with automated cameras from 2000 to 2013. Ambio, 46(Suppl. 1), 39-S52. https://doi.org/10.1007/s13280-016-0864-8

Pedersen, S. H., Tamstorf, M. P., Abermann, J., Westergaard-Nielsen, A., Lund, M., Skov, K., Sigsgaard, C., Mylius, M. R., Hansen, B. U., E. Liston, G. & Schmidt, N. M. (2016). Spatiotemporal characteristics of seasonal snow cover in Northeast Greenland from in situ observations. Arctic, Antarctic, and Alpine Research, 48(4), 653-671. https://doi.org/10.1657/AAAR0016-028

Jiang, Z., Zhang, S., Yang, C., Zadegan, R. M., Kjems, J., Huang, Y., Besenbacher, F. & Dong, M. (2015). Serum-induced degradation of 3D DNA box origami observed with high-speed atomic force microscopy (vol 8, pg 2170, 2015). Nano Research, 8(10), 3446-3446. https://doi.org/10.1007/s12274-015-0848-1

Xiang, F., Lu, Y., Li, C., Song, X., Liu, X., Wang, Z., Liu, J. & Dong, M. (2015). Cyclotrimerization-Induced Chiral Supramolecular Structures of 4-Ethynyltriphenylamine on Au(111) Surface. Chemistry: A European Journal, 21(37), 12978-12983. https://doi.org/10.1002/chem.201501434

Jiang, Z., Wang, M., Cheng, H., Li, J., Aslan, H., Lv, H., Yao, Y., Shao, L., Huang, Y. & Dong, M. (2015). Facile Preparation of TiO2 Nanoclusters on Graphene Templates for Photodegradation of Organic Compounds. Journal of Materials Science & Technology, 31(8), 840-844. https://doi.org/10.1016/j.jmst.2015.01.011

de Almeida Campos, R. C., Zhang, S., Majikes, J. M., Ferraz, L. C. C., LaBean, T. H., Dong, M. D. & Ferapontova, E. E. (2015). Electronically addressable nanomechanical switching of i-motif DNA origami assembled on basal plane HOPG. Chemical Communications, 51(74), 14111-14114. https://doi.org/10.1039/c5cc04678e

Wang, X., Weber, J. K., Liu, L., Dong, M., Zhou, R. & Li, J. (2015). A novel form of β-strand assembly observed in Aβ_33-42 adsorbed onto graphene. Nanoscale, 7(37), 15341-15348. https://doi.org/10.1039/c5nr00555h

Sun, M., Yang, C., Zheng, J., Wang, M., Chen, M., Le, D. Q. S., Kjems, J. & Bünger, C. (2015). Enhanced efficacy of chemotherapy for breast cancer stem cells by simultaneous suppression of multidrug resistance and antiapoptotic cellular defense. Acta Biomaterialia, 28, 171–182. https://doi.org/10.1016/j.actbio.2015.09.029

Yang, C., Ogaki, R., Hansen, L., Kjems, J. & Mian Teo, B. (2015). Theranostic carbon dots derived from garlic with efficient anti-oxidative effects towards macrophages. R S C Advances, 118, 97836-97840. https://doi.org/10.1039/C5RA16874K

Derczynski, L. & Chester, S. (2016). Generalised Brown Clustering and Roll-up Feature Generation. In 30th AAAI Conference on Artificial Intelligence, AAAI 2016: AAAI (pp. 1533-1539). AAAI Press.

Haahr-Lillevang, L. & Balling, P. (2015). Ultrashort-pulse laser excitation and damage of dielectric materials: Experiments and modeling. In Pacific Rim Laser Damage 2015: : Optical Materials for High-Power Lasers SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2185834

Olesen, B. & Jørgensen, M. S. (2015). Germination timing in Danish Zostera marina populations: effects of seed source and sediment type. Abstract from CERF, Portland, OR, United States.

Delefosse, M., Povidisa, K., Poncet, D., Kristensen, E. & Olesen, B. (2016). Variation in size and chemical composition of seeds from the seagrass Zostera marina - ecological implications. Aquatic Botany, 131, 7-14.

Olesen, B., Krause-Jensen, D. & Christensen, P. B. (2017). Depth-related changes in reproductive strategy of a cold-temperate Zostera marina meadow. Estuaries and Coasts, 40(2), 553-563. https://doi.org/10.1007/s12237-016-0155-4