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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Madsen, I. (2007). Moduli Spaces from a Topological Viewpoint. In M. Sanz-Solé, J. Soria, J. L. Varona & J. Verdera (Eds.), Proceedings of the  International Congress of Mathematicians: Plenary lectures and ceremonies (pp. 385-411). European Mathematical Society.
Galatius, S., Madsen, I., Tillmann, U. & Weiss, M. (2006). The Homotopy Type of the Cobordism Category. arxiv.org. http://arxiv.org/abs/math/0605249
Asturizaga, A. S., Øllgaard, B. & Balslev, H. (2006). Frutos comestibles. In M. Moraes, B. Øllgaard, L. P. Kvist, F. Borchsenius & H. Balslev (Eds.), Botánica Económica de los Andes Centrales (pp. 329-346)
Penner, R. & Kaufmann, R. M. (2006). Closed/Open String Diagrammatics. Nuclear Physics, Section B, 748, 335-379.
de la Torre, L., Muriel, P. & Balslev, H. (2006). Etnobotánica en los Andes del Ecuador. In M. Moraes, B. Øllgaard, L. P. Kvist, F. Borchsenius & H. Balslev (Eds.), Botánica Económica de las Andes Centrales (pp. 246-267)
Balslev, H. (2006). Introducción. In M. Moraes, B. Øllgaard, L. P. Kvist, F. Borchsenius & H. Balslev (Eds.), Botánica Económica de los Andes Centrales
Penner, R. (2006). Probing Mapping Class Groups Using Arcs. In B. Farb (Ed.), Problems on Mapping Class Groups and Related Topics (Vol. 74, pp. 97-114). American Mathematical Society.
Agheli, H. & Sutherland, D. (2006). Nanofabrication of polymer surfaces utilizing colloidal lithography and ion etching. IEEE Transactions of Nanobioscience, 5(1), 9-14.
Campoccia, D., Montanaro, L., Agheli, H., Sutherland, D., Pirini, V., Giardino, R. & Arciola, C. R. (2006). Bacteria study of staphylococcus aureus adhesion on a novel nanostructured surface. International Journal of Artificial Organs, 29(6), 622-629.
Dalby, M. J., McCloy, D., Robertson, M., Agheli, H., Sutherland, D., Affrossman, S. & Oreffo, R. O. C. (2006). Osteoprogenitor response to semi-ordered and random nanotopographies. Biomaterials, 27(15), 2980-2987.
Penner, R. (2006). Surfaces, Circles, and Solenoids. In A. Papadopoulos (Ed.), Handbook of Teichmüller Theory (Vol. 1). European Math. Society Series.
Giavaresi, G., Tschon, M., Dalby, J. H., Liggat, J. J., Sutherland, D., Agheli, H., Fini, M., Torricelli, P. & Giardino, R. (2006). In vitro and in vivo response to nanotopographically modified surfaces of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) and polycaprolactone. Journal of Biomaterials Science. Polymer Edition, 17(12), 1405-23.
Christensen, S. (2002). A synthetic groundwater modelling study of the accuracy of GLUE uncertainty intervals. Abstract from  27th General Assembly of EGS in Nice, France.
Lovschall, H., Tummers, M., Thesleff, I., Füchtbauer, E.-M. & Poulsen, K. (2005). Activation of the Notch signaling pathway in response to pulp capping of rat molars. European Journal of Oral Sciences, 113(4), 312-317.
Christensen, S., Cooley, R. L., Kovar (red.), K. & Hrkal (red.), Z. (2002). Experiences from the testing of a theory for modelling groundwater flow in heterogeneous media. Paper presented at 4th Int. Conf. on Calibration and Reliability in Groundwater Modelling, Model CARE, Charles University, Prague.
Penner, R. (2006). Lambda Lengths. Department of Mathematical Sciences, Aarhus University. http://www.ctqm.au.dk/research/MCS/lambdalengths.pdf
Seidenkrantz, M.-S., Kuijpers, A., Aagaard-Sørensen, S., Andersson, S., Christiansen, S., Ebbesen, H., Fischel, A., Heinemeier, J., Jiang, H., Knutz, P., Lindgren, H., Lloyd, J., Moros, M., Møller, H. S., Ploug, J., Poulsen, N., Przybylo, P., Snowball, I. & Stabell, B. (2007). The Davis Strait Arctic Gateway: Ocean Circulation and West Greenland Climate since the Last Glacial Maximum (DASAG). Abstract from Forams2006 - International Symposium on Foraminifera, Natal, Brazil.
Weyer, G., Gunnlaugsson, H. P., Bharuth-Ram, K., Dietrich, M., Mantovan, R., Naicker, V., Naido, D. & Sielemann, R. (2005). Acceleration of diffusional jumps of interstitial Fe with increasing Ge concentration in Si1-xGex alloys observed by Mössbauer spectroscopy. Hyp. Int., 158, 417-421.
Lundgaard, K. L., Tegner, C., Cawthorn, R. G., Kruger, F. J. & Wilson, J. R. (2006). Trapped intercumulus liquid in the Main Zone of the eastern Bushveld Complex, South Africa. Contributions to Mineralogy and Petrology, 151, 352-369.
Overgaard, J., Sørensen, J. G., Petersen, S. O., Loeschcke, V. & Holmstrup, M. (2006). Reorganization  of membrane lipids during fast and slow cold hardening in Drosophila melanogaster. Physiological Entomology, 31, 328-335.
Lauritsen, J. V., Vang, R. T. & Besenbacher, F. (2006). Applications of Atom-resolved Scanning Tunneling Microscopy in Catalysis Research. In B. Bhusan & H. Fuchs (Eds.), Applied Scanning Probe Methods VII: Biomimetics and Industrial Applications (Vol. 7, pp. 197-221). Springer.
Lindholm Nielsen, M., Lister, R., Adams, E. S., Fitzgerald, S., Fone, W., Hamer, J., McCartney, R., Moström, J. E., Sanders, K., Seppälä, O., Simon, B. & Thomas, L. (2004). A multi-national study of reading and tracing skills in novice programmers. SIGCSE Bulletin Inroads, 36(4), 119-150.
Heckmann, A. B., Hebelstrup, K. H., Larsen, K., Micaelo, N. M. & Jensen, E. Ø. (2006). A single hemoglobin gene in Myrica gale retains both symbiotic and non-symbiotic specificity. Plant Mol. Biol., 61(4-5), 769-779.
Hebelstrup, K. H., Hunt, P., Dennis, E., Jensen, S. B. & Jensen, E. Ø. (2006). Hemoglobin is essential for normal growth of Arabidopsis organs. Physiol. Plant., 127(1), 157-166.
Ebbesen, M. (2006). Brug af nanoteknologi inden for fødevareforskning. In S. Brock, A. Moe Rasmussen & B. B. Hansen (Eds.), Tankeføde - om mad, måltider og fødevarer i sammenhæng (pp. 119-135). Forlaget Philosophia.
Lund, M. B., Fritz, M., Holmstrup, M. & Schramm, A. (2006). Co-Speciation of Earthworms and their nephridial symbionts, Acidovorax Spp. In The Hidden Powers - Microbial Communities in Action.Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11). Vienna, Austria (pp. 182). International Society for Microbial Ecology.
Herrmann, M. & Schramm, A. (2006). Do freshwater macrophytes influence the community structure of ammonia-oxidizing and denitrifying bacteria in the rhizosphere? In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11) (pp. 349). International Society for Microbial Ecology.
Nielsen, L. P. (2005). Impact of Bacterial NO3- Transport on Sediment Biogeochemistry. Applied and Environmental Microbiology, 7575-7577.
Mailund, T., Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. (2007). Experiences with GeneRecon on MiG. Future Generation Computer Systems - The International Journal of eScience, 23, 580-586. https://doi.org/10.1016/j.future.2006.09.003
Bang, A., Grønkjær, P., Clemmesen, C. & Høie, H. (2006). Parental effects on early life history traits of Atlantic herring (Clupea harengus L.) larvae. Journal of Experimental Marine Biology and Ecology, 334, 51-63.
Krüger, A., Birkedal, V., Raarup, M. K., Kristensen, M., Kjems, J. & Besenbacher, F. (2006). Single-molecule Microscopy on Nucleic Acids. Poster session presented at NANOBIO Summer School "The live cell from nano to micro", Cargese, Corse, France.
Asakawa, K., Watanabe, Y., Ozaki, N., Mizutani, M., Takata, Y., Kitagawa, Y., Ikeda, N., Sugimoto, Y., Wang, X., Ohkouchi, S., Nakamura, S., Watanabe, A., Kristensen, M., Sigmund, O., Borel, P. I. & Baets, R. (2006). Photonic crystals and quantum dots: towards integrated optics for advanced ultra-fast all-optical signal processing. Paper presented at ECOC'06, Cannes, France.
Sugimoto, Y., Watanabe, Y., Ikeda, N., Ozaki, N., Mizutani, M., Takata, Y., Asakawa, K., Ishikawa, H., Jensen, J. S., Sigmund, O., Borel, P. I. & Kristensen, M. (2006). Topology optimization for photonic crystal waveguide intersection with wide and flat bandwidths in ultra-fast all-optical switch (PC-SMZ). Paper presented at ECOC'06, Cannes, France.

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R. Kepp, R., Struve, A., Christiansen, C., Lund-Hansen, L. C., Holtegaard Nielsen, M. & Vang, T. (2006). Transport and hydraulically-induced recycling of phosphorus in the North Sea-Baltic Sea transition zone. Oceanologia, 48(2), 175-191.
Lever, M., Alperin, M. J., Engelen, B., Inagaki, F., Nakagawa, S., Steinsbu, B. O. & Teske, A. (2006). Trends in basalt and sediment core contamination during IODP Expedition 301. Geomicrobiology Journal, 23, 517-530.
Brix, H., Schierup, H.-H. & Arias, C. A. (2006). Twenty years experience with constructed wetland systems in Denmark - what did we learn? In 10th International Conference on Wetland Systems for Water Pollution Control, Lisbon, Portugal, 23-29 september, 2006 (pp. 1633-1641)
Byg, A., Vormisto, J. & Balslev, H. (2006). Using the useful: characteristics of used palms in south-eastern Ecuador. Environment, Development and Sustainability, 8, 495-506.
Heinz, B., Birk, S., Kappler, A., Liedl, R., Geyer, T., Straub, K. L. & Bester, K. (2006). Vulnerability of a karst spring to waste water infiltration (Gallusquelle, Southwest Germany). Poster session presented at European Geosciences Union General Assembly 2006, Vienna, Austria.
Heinz, B., Birk, S., Kappler, A., Liedl, R., Geyer, T., Straub, K. L. & Bester, K. (2006). Vulnerability of a karst spring to waste water infiltration (Gallusquelle, Southwest Germany). Poster session presented at All About Karst & Water, Vienna, Austria.
Riis, T. (2006). Water plants past and present. In K. Sand-Jensen, N. Friberg & J. Murphy (Eds.), Running waters (pp. 105-114). National Environmental Research Institute.
Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., Wang, J., Li, S., Li, R., Bolund, L. & Wang, J. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. https://doi.org/10.1093/nar/gkl031
Bjorholm, S. W., Svenning, J.-C., Skov, F. & Balslev, H. (2006). Which factors control the distribution of palms in the Americas?. Poster session presented at ISOBIS Annual Meeting, 2006, Copenhagen, Denmark.
Christiansen, C., Vølund, G., Lund-Hansen, L. C. & Bartholdy, J. (2006). Wind influence on tidal flat sediment dynamics: Field investigations in the Ho Bugt, Danish Wadden Sea. Marine Geology, 235, 75-86.
Madsen, P. T., Wahlberg, M., Torgaard, J., Lucke, K. & Tyack, P. (2006). Wind turbine underwater noise and marine mammals: implications of current knowledge and data needs. Marine Ecology Progress Series, 309, 279-295.
Hansen, A. A., Merrison, J., Nørnberg, P., Lomstein, B. A. & Finster, K. (2005). Activity and stability of a complex bacterial soil community under simulated Martian conditions. International Journal of Astrobiology, 4(2), 135-144.
Arias, C. A., Brix, H. & Garza, M. F. (2005). Alternatives for phosphorus removal in subsurface flow constructed wetlands. In Meeting Reader. International Meeting on phytodepuration (19-22 July 2005, Lorca, Murcia, Spain) (pp. 74-80)
Treude, T., Niggemann, J., Kallmeyer, J., Wintersteller, P., Schubert, CJ., Boetius, A. & Jørgensen, BB. (2005). Anaerobic oxidation of methane and sulfate reduction along the Chilean continental margin. Geochimica et Cosmochimica Acta, 69(11), 2767-2779.
Kolb, C., Abart, R., Bérces, A., Garry, J. R. C., Hansen, A. A., Hohenau, W., Kargl, G., Lammer, H., Patel, M. R., Rettberg, P. & Stan-Lotter, H. (2005). An ultraviolet simulator for the incident Martian surface radiation and its applications. International Journal of Astrobiology, 4((3 & 4)), 241-249.
Andersen, L. W., Simonsen, V., Søgaard, B., Madsen, A. B., Pertoldi, C., Wind, P., Pihl, S., Fog, K. & Damgaard, C. F. (2005). Anvendelse af molekylærgenetiske markører i naturforvaltningen: Faglig rapport fra DMU, nr. 539.
Suren, A. M., Riis, T., Biggs, B. J. F., McMurtrie, S. & Barker, R. (2005). Assessing the effectiveness of enhancement activities in urban streams: I. Habitat responses. River Research and Applications, 21, 381-401.
Kvist, L. P., Skog, L. E., Clark, J. L. & Dunn, R. W. (2005). Biological extinction in Ecuador exemplified by the Gesneriaceae. In P. Lozano, R. Bussmann & H. Navarette (eds.) (Eds.), Memorias de Congreso de Conservación de la Biodiversidad de los Andes y Amazonía y IV Congreso Ecuatoriano de Botánica (pp. 117-168). FunBotanica.
Schmid, M. C., Maas, B., Dapena, A., van Niftrik, L., Schmidt, I., Cirpus, I., Kuenen, J. G., Wagner, M., Damste, H. S. S., Kuypers, M., Revsbech, N. P., Mendez, R., Jetten, M. S. M. & Strous, M. (2005). Biomarkers for in situ detection of anaerobic ammonium-oxidizing (Anammox) bacteria. Applied and Environmental Microbiology, 1677-1684.
Woodward, G., Ebenman, B., Emmerson, M., Montoya, J. M., Olesen, J. M., Valido, A. & Warren, P. H. (2005). Body-size determinants of the structure and dynamics of ecological networks: scaling from the individual to the ecosystem. In P. D. Ruiter, V. Wolters & J. Moore (Eds.), Dynamic Food Webs: Multispecies assemblages, ecosystem development and environmental change
Woodward, G., Ebenmann, B., Emmerson, M., Montoya, J. M., Olesen, J. M., Valido, A. & Warren, P. H. (2005). Body size in ecological networks. Trends in Ecology & Evolution, 20, 402-409.
Agrenius, S., Berggren, M., Cedhagen, T., Hansson, H. G., Karlsson, A., Kautsky, H., Lundin, K., Lundälv, T., Schander, C., Sigvaldadottir, E. & Smith, S. (2005). Brachiopoda. In U. Gärdenfors (Ed.), The 2005 Red List of Swedish Species (pp. 423-425). ArtDatabanken.
Galli, G. L. J., Skovgaard, N., Abe, A. S., Taylor, E. W., Conlon, J. M. & Wang, T. (2005). Cardiovascular actions of rattlesnake bradykinin ([Val1,Thr6]bradykinin) in the anesthetized South American rattlesnake Crotalus durissus terrificus. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 288, 456-465.