Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Sandquist, E. L., Buckner, A. J., Shetrone, M. D., Barden, S. C., Pilachowski, C. A., Deliyannis, C. P., Harmer, D., Mathieu, R., Meibom, S., Frandsen, S. & Orosz, J. A. (2023). Evolved Eclipsing Binaries and the Age of the Open Cluster NGC 752* ^* Based on observations made with with the Hobby-Eberly Telescope, which is a joint project of the University of Texas at Austin, the Pennsylvania State University, Stanford University, Ludwig-Maximilians-Universität München, and Georg-August-Universität Göttingen. Astronomical Journal, 165(1), Article 6. https://doi.org/10.3847/1538-3881/ac9c59

Correa, D. F., Stevenson, P. R., Umaña, M. N., Coelho, L. D. S., Lima Filho, D. D. A., Salomão, R. P., Amaral, I. L. D., Wittmann, F., Matos, F. D. D. A., Castilho, C. V., Phillips, O. L., Guevara, J. E., Carim, M. D. J. V., Magnusson, W. E., Sabatier, D., Molino, J. F., Irume, M. V., Martins, M. P., Guimarães, J. R. D. S. ... ter Steege, H. (2023). Geographic patterns of tree dispersal modes in Amazonia and their ecological correlates. Global Ecology and Biogeography, 32(1), 49-69. https://doi.org/10.1111/geb.13596

Christensen, M. H., Drue, S. O., Rasmussen, M. H., Frydendahl, A., Lyskjær, I., Demuth, C., Nors, J., Gotschalck, K. A., Iversen, L. H., Andersen, C. L. & Pedersen, J. S. (2023). Dreams: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection. Genome Biology, 24(1), 99. Article 99. https://doi.org/10.1186/s13059-023-02920-1

Sørensen, S. G., Shrikhande, A., Poulsgaard, G. A., Christensen, M. H., Bertl, J., Laursen, B. E., Hoffmann, E. R. & Pedersen, J. S. (2023). Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns. eLife, 12, Article e81224. https://doi.org/10.7554/elife.81224

Hong, Y., Zhang, D., Gao, Z., Zhang, Y., Li, Q. & Dong, M. (2023). Constructing two-dimensional interfacial ice-like water at room temperature for nanotribology. Nano Research, 16(7), 9977-9982. https://doi.org/10.1007/s12274-023-5485-5

Ahrenfeldt, J., Christensen, D. S., Østergaard, A. B., Kisistók, J., Sokač, M. & Birkbak, N. J. (2023). The ratio of adaptive to innate immune cells differs between genders and associates with improved prognosis and response to immunotherapy. PLoS One, 18(2 ), Article e0281375. https://doi.org/10.1371/journal.pone.0281375

Fournais, S. & Solovej, J. P. (2023). The energy of dilute Bose gases II: the general case. Inventiones Mathematicae, 232(2), 863-994. https://doi.org/10.1007/s00222-022-01175-0

Liu, L., Grombacher, D., Griffiths, M., Vang, M. & Larsen, J. J. (2023). Signal Processing Steady-State Surface NMR Data. IEEE Transactions on Instrumentation and Measurement, 72, Article 6502313. https://doi.org/10.1109/TIM.2023.3264033

Timóteo, S., Albrecht, J., Rumeu, B., Norte, A. C., Traveset, A., Frost, C. M., Marchante, E., López-Núñez, F. A., Peralta, G., Memmott, J., Olesen, J. M., Costa, J. M., da Silva, L. P., Carvalheiro, L. G., Correia, M., Staab, M., Blüthgen, N., Farwig, N., Hervías-Parejo, S. ... Heleno, R. (2023). Tripartite networks show that keystone species can multitask. Functional Ecology, 37(2), 274-286. https://doi.org/10.1111/1365-2435.14206

Daly, E. Z., Gerlich, H. S., Frenot, Y., Høye, T. T., Holmstrup, M. & Renault, D. (2023). Climate Change Helps Polar Invasives Establish and Flourish: Evidence from Long-Term Monitoring of the Blowfly Calliphora vicina. Biology, 12(1), Article 111. https://doi.org/10.3390/biology12010111

Wray, K. B. (Ed.) (2024). Kuhn’s The Structure of Scientific Revolutions at 60. Cambridge University Press. Cambridge Philosophical Anniversaries https://doi.org/10.1017/9781009122696

Wray, K. B. (2024). Introduction: The Impact of The Structure of Scientific Revolutions . In K. B. Wray (Ed.), Kuhn's The Structure of Scientific Revolutions at 60 (pp. 1-18). Cambridge University Press. https://doi.org/10.1017/9781009122696.002

Wray, K. B. (2024). The Orwellian Dimension of Scientific Progress: from Part III - Incommensurability, Progress, and Revolutions . In K. B. Wray (Ed.), Kuhn's The Structure of Scientific Revolutions at 60 (pp. 182-196). Cambridge University Press. https://doi.org/10.1017/9781009122696.015

Vallina, N. S., Geary, C., Jepsen, M. & Andersen, E. S. (2023). Computer-Aided Design and Production of RNA Origami as Protein Scaffolds and Biosensors. In J. Valero (Ed.), DNA and RNA Origami: Methods and protocols (pp. 51-67). Humana Press. https://doi.org/10.1007/978-1-0716-3028-0_3

Sampedro Vallina, N., McRae, E. K. S., Hansen, B. K., Boussebayle, A. & Andersen, E. S. (2023). RNA origami scaffolds facilitate cryo-EM characterization of a Broccoli-Pepper aptamer FRET pair. Nucleic Acids Research, 51(9), 4613-4624. https://doi.org/10.1093/nar/gkad224

Volckaert, K., Majchrzak, P. E., Biswas, D., Jones, A., Bianchi, M., Jiang, Z., Dubourg, R., Stenshøj, R. Ø., Jensen, M. L., Jones, N. C., Hoffmann, S. V., Mi, J., Bremholm, M., Pan, X. C., Chen, Y. P., Hofmann, P., Miwa, J. & Ulstrup, S. (2023). Surface electronic structure engineering of manganese bismuth tellurides guided by micro-focused angle-resolved photoemission. Advanced Materials, 35(36), Article 2301907. https://doi.org/10.1002/adma.202301907

Lunde, L. F., Ferkingstad, B., Wegger, H., Høye, T. T., Mann, H. M. R. & Birkemoe, T. (2023). Quantification of invertebrates on fungal fruit bodies by the use of time-lapse cameras. Ecological Entomology, 48(5), 544-556. https://doi.org/10.1111/een.13246

Aiyer, K. & Doyle, L. E. (2023). Extracellular Electron Transfer of Weak Electricigens in the Presence of a Competing Electron Acceptor. Journal of The Electrochemical Society, 170(5), Article 055501. https://doi.org/10.1149/1945-7111/accf3e

Janyasupab, P., Brix, H. & Jampeetong, A. (2023). Effects of Longan Biochar as Filter Materials on Plant Responses and Wastewater Treatment by Typha angustifolia L. Natural and Life Sciences Communications, 22(3), Article e2023035. https://doi.org/10.12982/NLSC.2023.035

Hogräfer, M. & Schulz, H.-J. (2024). Tailorable Sampling for Progressive Visual Analytics. IEEE Transactions on Visualization and Computer Graphics, 30(8), 4809-4824. https://doi.org/10.1109/TVCG.2023.3278084

Mahar, N. S., Aiyer, K., Juwayria, Doyle, L. E. & Gupta, I. (2023). Draft Genome Sequence of a Delftia sp., a Member of an Electroactive Community Enriched from Wastewater from the Indian Institute of Technology Delhi, India. Microbiology Resource Announcements, 12(4). https://doi.org/10.1128/mra.01121-22

Baker, C. J., Bertsche, W., Capra, A., Cesar, C. L., Charlton, M., Christensen, A. J., Collister, R., Cridland Mathad, A., Eriksson, S., Evans, A., Evetts, N., Fabbri, S., Fajans, J., Friesen, T., Fujiwara, M. C., Gill, D. R., Grandemange, P., Granum, P., Hangst, J. S. ... ALPHA Collaboration (2023). Design and performance of a novel low energy multispecies beamline for an antihydrogen experiment. Physical Review Accelerators and Beams, 26(4), Article 040101. https://doi.org/10.1103/PhysRevAccelBeams.26.040101

Dieudonné, T., Jaxel, C., Lejeune, M., Lenoir, G. & Montigny, C. (2023). Expression in Saccharomyces cerevisiae and Purification of a Human Phospholipid Flippase. In Â. Sousa & L. Passarinha (Eds.), Advanced methods in structural biology (pp. 231-246). Humana Press. https://doi.org/10.1007/978-1-0716-3147-8_13

Hirsch, C., Holmes, M. & Kleptsyn, V. (2023). Infinite WARM graphs III: Strong reinforcement regime. Nonlinearity, 36(6), 3013-3042. https://doi.org/10.1088/1361-6544/acc9a0

Mikkelsen, P. S. (2023). Scoresby Sund: På opdagelse i Nordøstgrønland. Xsirius Books.

Mikkelsen, P. S. (2023). Tusind dage med SIRIUS. (4 ed.) Xsirius Books.

Geilfus, N. X., Delille, B., Tison, J. L., Lemes, M. & Rysgaard, S. (2023). Gas dynamics within landfast sea ice of an Arctic fjord (NE Greenland) during the spring- summer transition. Elementa, 11(1), Article 00056. https://doi.org/10.1525/elementa.2022.00056

Iversen, M. & Nielsen, A. E. B. (2023). Tower of quantum scars in a partially many-body localized system. Physical Review B, 107(20), Article 205140. https://doi.org/10.1103/PhysRevB.107.205140

Larsen, N. K., Kristensen, K. B. R., Siggaard-Andersen, M. L., Heilmann-Clausen, C. & Kjær, K. H. (2023). X-ray fluorescence (XRF) fingerprinting of Palaeogene deposits in Denmark. GEUS Bulletin, 53, Article 8330. https://doi.org/10.34194/geusb.v53.8330

Li, Y., Zhang, D., Ye, J., Mai, Y., Wang, C., Yang, Y., Li, Y., Besenbacher, F., Niemantsverdriet, H., Rosei, F., Pan, F. & Su, R. (2023). A Modular Tubular Flow System with Replaceable Photocatalyst Membranes for Scalable Coupling and Hydrogenation. Angewandte Chemie - International Edition, 62(22), Article e202302979. https://doi.org/10.1002/anie.202302979

Fandina, O. N., Høgsgaard, M. M. & Larsen, K. G. (2023). Barriers for Faster Dimensionality Reduction. In P. Berenbrink, P. Bouyer, A. Dawar & M. M. Kante (Eds.), 40th International Symposium on Theoretical Aspects of Computer Science, STACS 2023 Article 31 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.STACS.2023.31

Toropainen, A., Kangasluoma, J., Vehkamäki, H. & Kubečka, J. (2023). Heterogeneous Ion-Induced Nucleation of Water and Butanol Vapors Studied via Computational Quantum Chemistry beyond Prenucleation and Critical Cluster Sizes. The Journal of Physical Chemistry A, 127(18), 3976–3990. https://doi.org/10.1021/acs.jpca.3c00066

Joyce, W., Ripley, D. M., Gillis, T., Black, A. C., Shiels, H. A. & Hoffmann, F. G. (2023). A Revised Perspective on the Evolution of Troponin I and Troponin T Gene Families in Vertebrates. Genome Biology and Evolution, 15(1), Article evac173. https://doi.org/10.1093/gbe/evac173

Zuquim, G., Van doninck, J., Chaves, P. P., Quesada, C. A., Ruokolainen, K. & Tuomisto, H. (2023). Introducing a map of soil base cation concentration, an ecologically relevant GIS-layer for Amazonian forests. Geoderma Regional, 33, Article e00645. https://doi.org/10.1016/j.geodrs.2023.e00645

Afshani, P. & Cheng, P. (2023). Lower Bounds for Semialgebraic Range Searching and Stabbing Problems. Journal of the ACM, 70(2), 1-26. Article 16. https://doi.org/10.1145/3578574

Qiao, W., Fan, X., Liu, W., Khan, F. N., Zhang, D., Han, F., Yue, H., Li, Y., Dimitratos, N., Albonetti, S., Wen, X., Yang, Y., Besenbacher, F., Li, Y., Niemantsverdriet, H., Lin, H. & Su, R. (2023). Creating and Stabilizing an Oxidized Pd Surface under Reductive Conditions for Photocatalytic Hydrogenation of Aromatic Carbonyls. Journal of the American Chemical Society, 145(9), 5353-5362. https://doi.org/10.1021/jacs.2c13196

Sobek, A., Abel, S., Sanei, H., Bonaglia, S., Li, Z., Horlitz, G., Rudra, A., Oguri, K. & Glud, R. N. (2023). Organic matter degradation causes enrichment of organic pollutants in hadal sediments. Nature Communications, 14(1), Article 2012. https://doi.org/10.1038/s41467-023-37718-z

Højlund, M. G., Zoccante, A. & Christiansen, O. (2023). General exponential basis set parametrization: Application to time-dependent bivariational wave functions. The Journal of Chemical Physics, 158(20), Article 204104. https://doi.org/10.1063/5.0152601

Thøgersen, J., Weidner, T. & Jensen, F. (2023). The primary photolysis of aqueous carbonate di-anions. Physical Chemistry Chemical Physics, 25(20), 14104-14116. https://doi.org/10.1039/d3cp00236e

Sigurdsson, A. I., Louloudis, I., Banasik, K., Westergaard, D., Winther, O., Lund, O., Ostrowski, S. R., Erikstrup, C., Pedersen, O. B. V., Nyegaard, M., Brunak, S., Vilhjálmsson, B. J., Rasmussen, S. & DBDS Genomic Consortium (2023). Deep integrative models for large-scale human genomics. Nucleic Acids Research, 51(12), E67. Article e67. https://doi.org/10.1093/nar/gkad373

Ding, Y., Hou, K., Xu, Z., Pimplaskar, A., Petter, E., Boulier, K., Privé, F., Vilhjálmsson, B. J., Olde Loohuis, L. M. & Pasaniuc, B. (2023). Polygenic scoring accuracy varies across the genetic ancestry continuum. Nature, 618, 774-781. https://doi.org/10.1038/s41586-023-06079-4

Monteath, A. J., Bolton, M. S. M., Harvey, J., Seidenkrantz, M.-S., Pearce, C. & Jensen, B. (2023). Ultra-distal tephra deposits and Bayesian modelling constrain a variable marine radiocarbon offset in Placentia Bay, Newfoundland. Geochronology, 5(1), 229-240. https://doi.org/10.5194/gchron-5-229-2023

Ottesen, M., Ehrenreich-Petersen, E., Kronbo, C. H., Baudelet, F., Nataf, L., Kantor, I., Jørgensen, M. R. V. & Bremholm, M. (2023). Pressure-induced charge-transfer and structural transition in hexagonal multiferroic HoMnO₃. Physical Review B, 107(13), Article 134115. https://doi.org/10.1103/PhysRevB.107.134115

Lu, J., Hsiao, E. Y., Phillips, M. M., Burns, C. R., Ashall, C., Morrell, N., Ng, L., Kumar, S., Shahbandeh, M., Hoeflich, P., Baron, E., Uddin, S., Stritzinger, M. D., Suntzeff, N. B., Baltay, C., Davis, S., Diamond, T. R., Folatelli, G., Förster, F. ... Sand, D. J. (2023). Carnegie Supernova Project. II. Near-infrared Spectral Diversity and Template of Type Ia Supernovae. Astrophysical Journal, 948(1), Article 27. https://doi.org/10.3847/1538-4357/acc100

Nygaard, A., Holm, E. B., Hannestad, S. & Tram, T. (2023). CONNECT: a neural network based framework for emulating cosmological observables and cosmological parameter inference. Journal of Cosmology and Astroparticle Physics, 2023(5), Article 025. https://doi.org/10.1088/1475-7516/2023/05/025

de Borbon, M. & Spotti, C. (2023). Calabi–Yau metrics with conical singularities along line arrangements. Journal of Differential Geometry, 123(2), 195-239. https://doi.org/10.4310/JDG/1680883576

Teng, S. N., Svenning, J. C. & Xu, C. (2023). Large mammals and trees in eastern monsoonal China: anthropogenic losses since the Late Pleistocene and restoration prospects in the Anthropocene. Biological Reviews, 98(5), 1607-1632. https://doi.org/10.1111/brv.12968

Zymaroieva, A., Bondarev, D., Kunakh, O., Svenning, J. C. & Zhukov, O. (2023). Which Fish Benefit from the Combined Influence of Eutrophication and Warming in the Dnipro River (Ukraine)? Fishes, 8(1), Article 14. https://doi.org/10.3390/fishes8010014

Martín-Hernanz, S., Nogales, M., Valente, L., Fernández-Mazuecos, M., Pomeda-Gutiérrez, F., Cano, E., Marrero, P., Olesen, J. M., Heleno, R. & Vargas, P. (2023). Time-calibrated phylogenies reveal mediterranean and pre-mediterranean origin of the thermophilous vegetation of the Canary Islands. Annals of botany, 131(4), 667-684. https://doi.org/10.1093/aob/mcac160

Chatzopoulos, S., Vergoulis, T., Skoutas, D., Dalamagas, T., Tryfonopoulos, C. & Karras, P. (2023). Atrapos: Real-time Evaluation of Metapath Query Workloads. In ACM Web Conference 2023 - Proceedings of the World Wide Web Conference, WWW 2023 (pp. 2487-2498). Association for Computing Machinery. https://doi.org/10.1145/3543507.3583322

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