Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Ekberg, K., Pedersen, B. P., Sørensen, D. M., Nielsen, A. K., Veierskov, B., Nissen, P., Palmgren, M. G. & Buch-Pedersen, M. J. (2010). Structural identification of cation binding pockets in the plasma membrane proton pump. Proceedings of the National Academy of Sciences (PNAS), 107(50), 21400-5. https://doi.org/10.1073/pnas.1010416107

Schnetler, K. I. & Heilmann-Clausen, C. (2011). The molluscan fauna of the Eocene Lillebælt Clay, Denmark. Cainozoic Research, 8(1-2), 41-99. http://ingemann.schnetler.dk/pdf%20files/Schnetler%20&%20Heilmann-Clausen%202011.pdf

Zhai, X. & Brix, H. (2011). Root exudates from emergent wetland plants as an organic carbon source for denitrification in constructed wetlands.

Zhai, X. & Brix, H. (2012). Root Release of Organic Carbon and Nutrient Uptake by Three Emergent Wetland Plants.

Piwpuan, N. & Brix, H. (2011). Nitrogen nutrition of the sedge Cyperus laevigatus-A candidate species for use in constructed wetlands in hot and dry regions.

Zhang, Z., Olsen, E. M., Kryger, M., Voigt, N. V., Tørring, T., Gültekin, E., Nielsen, M., MohammadZadegan, R., Andersen, E. S., Nielsen, M. M., Kjems, J., Birkedal, V. & Gothelf, K. V. (2011). A DNA tile actuator with eleven discrete states. Angewandte Chemie International Edition, 50(17), 3983-7. https://doi.org/10.1002/anie.201007642

Andersen, J. E. & Villemoes, R. (2011). Degree one cohomology with twisted coefficients of the mapping class group. In S. Akbulut, T. Önder & D. Auroux (Eds.), Proceedings of the Gökova Geometry-Topology Conference 2010 (pp. 64-78). International Press of Boston. http://gokovagt.org/proceedings/2010/andevill.html

Molina, E., Alegret, L., Apellaniz, E., Bernaola, G., Caballero, F., Dinarès-Turell, J., Hardenbol, J., Heilmann-Clausen, C., Larrasoana, J. C., Luterbacher, H., Monechi, S., Ortiz, S., Orue-Etxebarria, X., Payros, A., Pujalte, V., Rodriguez-Tovar, F. J., Tori, F., Tosquella, J. & Uchman, A. (2011). The Global Stratotype Section and Point (GSSP) for the base of the Lutetian Stage at the Gorrondatxe section, Spain. Episodes, 34(2), 86-108. http://wzar.unizar.es/isps/pdf/Molina2011Episodes.pdf

Timmermann, A., Damgaard, C., Strandberg, M. T. & Svenning, J.-C. (2011). Short-term trends in vegetation cover of Danish semi-natural ecosystems: a landscape-ecological assessment of main drivers indicated by traits of winner and loser species. Poster session presented at science for the environment - environment for science, Aarhus, Denmark.

Schmitz, B., Pujalte, V., Molina, E., Monechi, S., Orue-Etxebarria, X., Speijer, R. P., Alegret, L., Apellaniz, E., Arenillas, I., Aubry, M.-P., Baceta, J.-I., Berggren, W. A., Bernaola, G., Caballero, F., Clemmensen, A., Dinarès-Turell, J., Dupuis, C., Heilmann-Clausen, C., Orús, A. H. ... Thomsen, E. (2011). The global stratotype sections and points for the bases of the Selandian (Middle Paleocene) and Thanetian (Upper paleocene) stages at Zumaia, Spain. Episodes, 34(4), 220-243. http://wzar.unizar.es/perso/alegret/pdfs_publicaciones/Schmitz_et_2011.pdf

Timmermann, A., Damgaard, C., Strandberg, M. T. & Svenning, J.-C. (2010). Plant species invasions in Danish semi-natural ecosystems: a macro- and landscape-ecological assessment of spatiotemporal patterns and main environmental drivers. Poster session presented at NEOBIOTA 2010 Conference: Biological Invasions in a Changing World - from Science to Management, København, Denmark.

Pearce, C., Cremer, H., Lammertsma, E. & Wagner-Cremer, F. (2011). Hydrologische veranderingen in Highlands Hammock State Park, Florida gedurende de laatste 2500 jaar, gebaseerd op een diatomeeënanalyse. Nederlands-Vlaamse Kring van Diatomisten. Diatomededelingen, 35, 47-53.

Berthelsen, A. N., Bøttiger, J., Sønderby, S., Almtoft, K. P., Christensen, B. H. & Nielsen, L. P. (2011). Optimization of the mechanical properties of magnetron sputtered diamond-like carbon coatings. Diamond and Related Materials, 20(5-6), 682-686. https://doi.org/10.1016/j.diamond.2011.03.016

Fischel, A., Seidenkrantz, M.-S. & Kuijpers, A. (2011). Multicentennial to millenial scale variability in the tropics - a 40.000 year record from the Caribbean Sea. Abstract from XVIII INQUA Congress, Bern, Bern, Switzerland.

Xu, S., Yang, Y., Xu, T., Kuang, Y., Dong, M., Zhang, F., Besenbacher, F. & Evans, D. G. (2011). Engineered morphologies of layered double hydroxide nanoarchitectured shell microspheres and their calcined products. Chemical Engineering Science, 66(10). https://doi.org/10.1016/j.ces.2011.02.024

Heinemeier, J., Ringbom, Å., Lindroos, A. & Sveinbjörnsdottir, A. E. (2010). Successful AMS ¹⁴C dating of non-hydraulic lime mortars from the medieval churches of the Åland Islands, Finland. Radiocarbon: An International Journal of Cosmogenic Isotope Research, 52(1), 171-204.

Schmid, M., Poulsen, M. B. & Moore, C. (2011). The RNA exosome and TRAMP regulate mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Cold Spring Harbor meeting on 'Eukaryoptic mRNA processing'.

Gołędowski, B., Nielsen, S. B. & Clausen, O. R. (2011). Norway and adjacent sedimentary basins during Cenozoic times - sediment fluxes, accumulation rates and mass balance. Geophysical Research Abstracts, 13(EGU2011-368). http://meetingorganizer.copernicus.org/EGU2011/EGU2011-368.pdf

Ringbom, Å., Heinemeier, J. & Lindroos, A. (2008). Lugnande besked om murbruksdatering. SKAS , 50-60.

Mapendano, C. K., Preker, P., Villesen, P., Prokop, A., Piatkowski, J., Schierup, M. H. & Jensen, T. H. (2011). Depletion of the RNA exosome triggers hypermethylation of human promoters.. Abstract from Third EMBO meeting on 'Chromatin and Epigenetics, Heidelberg, Germany.

Jensen, T. H. (2011). Uncovering layers of human RNA polymerase II transcription. Abstract from Mosbacher Kolloquium, Baden, Germany. https://doi.org/10.3288/contoo.paper.1128

Christensen, A. D., Egholm, D. L. & Piotrowski, J. A. (2011). Numerical modelling of subglacial sediment deformation. Geophysical Research Abstracts, 13(EGU2011-7829). http://meetingorganizer.copernicus.org/EGU2011/EGU2011-7829.pdf

Valen, E., Preker, P., Andersen , PR., Zhao, X., Chen, Y., Ender, C., Meister, G., Sandelin, A. & Jensen, T. H. (2011). Small RNA profiles from human genic regions suggest biogenic mechanisms and identify new putative regulatory molecules. RNA 2011 meeting, Kyoto, Japan 14-18 June.

Lubas, M. S., Christensen, M. S., Falkenby , L., Domanski, M., Lykke-Andersen, S., Andersen, J., Dziembowski, A. & Jensen, T. H. (2011). Identification of novel RNA degradation pathways in human cells. RNA 2011 meeting, Kyoto, Japan 14-18 June.

Basse-O'Connor, A., Graversen, S.-E. & Pedersen, J. (2014). Stochastic integration on the real line. Theory of Probability and Its Applications, 58(2), 193-213. https://doi.org/10.1137/S0040585X97986540

Poulsen, J. B., Andersen, K. R., Kjær, K. H., Vestergaard, A. L., Justesen, J. & Martensen, P. M. (2012). Characterization of human phosphodiesterase 12 and identification of a novel 2'-5' oligoadenylate nuclease - The ectonucleotide pyrophosphatase/phosphodiesterase 1. Biochimie, 94(5), 1098-1107. https://doi.org/10.1016/j.biochi.2012.01.012

Martensen, P. M., Vestergaard, A. L. & Knudsen, U. B. (2012). Virus infection and type 1 interferon in endometriosis. In K. Chaudhury & B. Chakravarty (Eds.), Endometriosis - Basic Concepts and Current Research Trends (pp. 245-262). InTech - Open Access Publisher. https://doi.org/10.5772/30098

Gourdon, P., Alfredsson, A., Pedersen, A., Malmerberg, E., Nyblom, M., Widell, M., Berntsson, R., Pinhassi, J., Braiman, M., Hansson, O., Bonander, N., Karlsson, G. & Neutze, R. (2008). Optimized in vitro and in vivo expression of proteorhodopsin: a seven-transmembrane proton pump. Protein Expression and Purification, 58(1), 103-13. https://doi.org/10.1016/j.pep.2007.10.017

Törnroth-Horsefield, S., Gourdon, P., Horsefield, R., Brive, L., Yamamoto, N., Mori, H., Snijder, A. & Neutze, R. (2007). Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist. Structure, 15(12), 1663-73. https://doi.org/10.1016/j.str.2007.09.023

Gómez-Consarnau, L., González, J. M., Coll-Lladó, M., Gourdon, P., Pascher, T., Neutze, R., Pedrós-Alió, C. & Pinhassi, J. (2007). Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature, 445(7124), 210-3. https://doi.org/10.1038/nature05381

Georgiou, P., Vincent, J., Andersson, M., Wöhri, A. B., Gourdon, P., Poulsen, J., Davidsson, J. & Neutze, R. (2006). Picosecond calorimetry: time-resolved x-ray diffraction studies of liquid CH2Cl2. Journal of Chemical Physics, 124(23), 234507. https://doi.org/10.1063/1.2205365

Katona, G., Snijder, A., Gourdon, P., Andréasson, U., Hansson, O., Andréasson, L.-E. & Neutze, R. (2005). Conformational regulation of charge recombination reactions in a photosynthetic bacterial reaction center. Nature Structural and Molecular Biology, 12(7), 630-1. https://doi.org/10.1038/nsmb948

Althage, M., Karlsson, J., Gourdon, P., Levin, M., Bill, R. M., Tigerström, A. & Rydström, J. (2003). Functional split and crosslinking of the membrane domain of the beta subunit of proton-translocating transhydrogenase from Escherichia coli. Biochemistry, 42(37), 10998-1003. https://doi.org/10.1021/bi034560x

Pedersen, L., Hansen, M. F., Pakula, M. M., Lassen, L. B., Dillschneider, P., marlar, S., Bechstein, S., Kromann-Hansen, T., Koffman, J. S., Torvund, J., Wolf, G., Domanski, M., Kousted, T. M., Nejsum, L. N., Sørensen, H. P., Schmitt-John, T., Andreasen, P. & Martensen, P. M. (2011). Practical Course in Molecular Cell Biology.

Friedrich, W. L., Seidenkrantz, M.-S. & Nielsen, O. B. (2000). Santorini (Greece) before the Minoan eruption: A reconstruction of the ring-island, natural resources and clay deposits from the Akrotiri excavation. Geological Society Special Publication, 171, 71-80. https://doi.org/10.1144/GSL.SP.2000.171.01.07

Knudsen, K. L., Conradsen, K., Heier-Nielsen, S. & Seidenkrantz, M.-S. (1996). Palaeoenvironments in the Skagerrak-Kattegat basin in the eastern North Sea during the last deglaciation. Boreas, 25(2), 65-77. https://doi.org/10.1111/j.1502-3885.1996.tb00836.x

Andresen, C. S., McCarthy, D. J., Dylmer, C. V., Seidenkrantz, M.-S., Kuijpers, A. & Lloyd, J. M. (2011). Interaction between subsurface ocean waters and calving of the Jakobshavn Isbræ during the late Holocene. The Holocene, 21(2), 211-224. https://doi.org/10.1177/0959683610378877

Solignac, S., Seidenkrantz, M.-S., Jessen, C. A., Kuijpers, A., Gunvald, A. K. & Olsen, J. (2011). Late-Holocene sea-surface conditions offshore Newfoundland based on dinoflagellate cysts. The Holocene, 21(4), 539-552. https://doi.org/10.1177/0959683610385720

Jessen, C. A., Solignac, S., Nørgaard-Pedersen, N., Mikkelsen, N., Kuijpers, A. & Seidenkrantz, M.-S. (2011). Exotic pollen as an indicator of variable atmospheric circulation over the Labrador Sea region during the mid to late Holocene. Journal of Quaternary Science, 26(3), 286-296. https://doi.org/10.1002/jqs.1453

Mernild, S. H., Seidenkrantz, M.-S., Liston, G. E., Chylek, P. & Hasholt, B. (2012). Climate-driven fluctuations in freshwater flux to Sermilik Fjord, East Greenland, during the last 4000 years. The Holocene, 22(2), 155-164. https://doi.org/10.1177/0959683611431215

Cheong, L.-Z. & Xu, X. (2011). Biocatalytic Route to Surface Active Lipid. Paper presented at 102nd AOCS Annual Meeting & Expo, Cincinnati, United States.

Cheong, L.-Z., Guo, Z. & Xu, X. (2011). Ionic Liquids based microreactors. Paper presented at Enzymatic Processing and Modification - Current and Future Trends, Ghent, Belgium.

Fedosov, S. & Xu, X. (2011). Enzymatic Biodiesel, Analysis of the Reaction Kinetics. Paper presented at 102nd AOCS Annual Meeting & Expo, Cincinnati, United States.

Møller, P. T., Severinsen, K., Koldsø, H., Rudnick, G., Schiøtt, B., Wiborg, O. & Sinning, S. (2011). Key residues controlling conformational transitions in the serotonin transporter. Poster session presented at SFB 35 – Symposium: Transmembrane Transporters in Health and Disease 2011, Vienna, Austria, Wien, Austria.

Frydenberg, J., Pierpaoli, M. & Loeschcke, V. (1999). Drosophila melanogaster is polymorphic for a specific repeated (CATA) sequence in the regulator regulatory region of hsp23. Gene, 236, 243-250.