Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Swann, A. F. (2012). Kovalev, Alexei; Nordström, Johannes. Asymptotically cylindrical 7-manifolds of holonomy G2 with applications to compact irreducible G2-manifolds. Ann. Global Anal. Geom. 38 (2010), no. 3, 221--257. Mathematical Reviews, 2012b(2012b:53086), MR2721660.

Swann, A. F. (2012). Reidegeld, Frank. Special cohomogeneity-one metrics with Q(1,1,1) or M(1,1,0) as the principal orbit. J. Geom. Phys. 60 (2010), no. 9, 1069--1088. Mathematical Reviews, 2012b(2012b:53087), MR2654088.

Larsen, P. F., Eg Nielsen, E., Meier, K., Olsvik, P. A., Hansen, M. M. & Loeschcke, V. (2012). Differences in salinity tolerance and gene expression between two populations of Atlantic cod (Gadus morhua) in response to salinity stress. Biochemical Genetics, 50, 454-466. https://doi.org/10.1007/s10528-011-9490-0

Brandsma, J., van de Vossenberg, Risgaard-Petersen, N., Schmid, M. C., Engström, P., Eurenius, K., Hulth, S., Jaeschke, A., Abbas, B., Hopmans, E., Strous, M., Schouten, S., Jetten, M. & Sinninghe Damsté, J. S. (2011). A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden. Environmental Microbiology Reports, 3(3), 360-366. https://doi.org/10.1111/j.1758-2229.2010.00233.x

Zhu, G., Wang, S., Wang, Y., Wang, C., Risgaard-Petersen, N., Jetten, M. SM. J. & Yin, C. (2011). Anaerobic ammonia oxidation in a fertilized paddy soil. I S M E Journal, 5(12), 1905–1912. https://doi.org/10.1038/ismej.2011

Risgaard-Petersen, N. & Nielsen, L. P. (2011). Long distance electron transmission couples sulphur, iron, calcium and oxygen cycling in marine sediment. Abstract from Goldschmidt2011, Prague, Czech Republic. http://www.goldschmidt2011.org/abstracts/finalPDFs/1729.pdf

Le, D. Q. S., Andersen, M. Ø., Baatrup, A., Chen, M., Chen, M., Lysdahl, H., Besenbacher, F., Bünger, C. & Kjems, J. (2011). Process for Modifying the Surface Morphology of a Medical Device: PA 2011 70752.

Gołędowski, B., Nielsen, S. B. & Clausen, O. R. (2012). Patterns of Cenozoic sediment flux from western Scandinavia. Basin Research, 24(4), 377–400. https://doi.org/10.1111/j.1365-2117.2011.00530.x

Lever, M. (2012). Acetogenesis in the energy-starved deep biosphere - a paradox? Frontiers in Microbiology, 2, 1-18.

Kraft, J. F., Vestergaard, M., Schiøtt, B. & Thøgersen, L. (2012). Modeling the Self-assembly and Stability of DHPC Micelles using Atomic Resolution and Coarse Grained MD Simulations. Journal of Chemical Theory and Computation, 8(5), 1556–1569. https://doi.org/10.1021/ct200921u

Chen, M., Hein, S., Le, D. Q. S., Nygaard, J. V., Bünger, C. & Kjems, J. (2011). TISSUE SCAFFOLD WITH CONTROLLED DRUG RELEASE. (Patent No. PCT/DK2011/050381).

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. ... Willerslev, E. (2011). Species-specific responses of Late Quaternary megafauna to climate and humans. Nature, 479(7373), 359-64. https://doi.org/10.1038/nature10574

Rattan, S., Kryzch, V., Schnebert, S., Perrier, E. & Nizard, C. (2013). Hormesis-based anti-aging products: a case study of a novel cosmetic. Dose-Response, 11(1), 99-108. https://doi.org/10.2203/dose-response.11-054.Rattan

Knudsen, M., Feliu, E. & Wiuf, C. H. (2012). Exact Analysis of Intrinsic Qualitative Features of Phosphorelays using Mathematical Models. Journal of Theoretical Biology, 300, 7-18. https://doi.org/10.1016/j.jtbi.2012.01.007

Gopalan, A., Klærke, B., Rajput, J., Toker, J., Andersen, L. H., Bochenkova, A., Antoine, R., Lemoine, J., Racaud, A. & Dugourd, P. (2012). Photodissociation pathways and lifetimes of protonated peptides and their dimers. Journal of Chemical Physics, 136(014307). https://doi.org/10.1063/1.3671943

De Brabandere, L., Thamdrup, B., Revsbech, N. P. & Foadi, R. (2011). A critical assessment of the occurrence and extend of oxygen contamination during anaerobic incubations utilizing commercially available vials. Journal of Microbiological Methods, 88(1), 147-154. https://doi.org/10.1016/j.mimet.2011.11.001

Ottosen, L. D. M., Juhler, S., Guldberg, L. B., Feilberg, A., Revsbech, N. P. & Nielsen, L. P. (2011). Regulation of ammonia oxidation in biotrickling airfilters with high ammonium load. Chemical Engineering Journal, 167(1), 198-205. https://doi.org/10.1016/j.cej.2010.12.022

M. Jensen, M., Lam, P., Revsbech, N. P., Nagel, B., Gaye, B., S. M. Jetten, M. & M. M. Kuypers, M. (2011). Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium. I S M E Journal, 5(10), 1660-1670. https://doi.org/10.1038/ismej.2011.44

Wagner, S. R., Toftegaard, T. S. & Bertelsen, O. W. (2011). Increased data quality in home blood pressure monitoring through context awareness. In Pervasive Computing Technologies for Healthcare (PervasiveHealth): 2011 5th International Conference on (pp. 234-237).

Wagner, S. R., Toftegaard, T. S. & Bertelsen, O. W. (2011). Context assessment during blood pressure self-measurement utilizing the sensor chair. In Ambient Intelligence: Second International Joint Conference on AmI 2011, Proceedings (Vol. 7040, pp. 295-299). Springer. https://doi.org/10.1007/978-3-642-25167-2_40

Kalvelage, T., M. Jensen, M., Contreras, S., Revsbech, N. P., Lam, P., Günter, M., LaRoche, J., Lavik, G. & M. M. Kuypers, M. (2011). Oxygen Sensitivity of Anammox and Coupled N-Cycle Processes in Oxygen Minimum Zones. PLoS One, 6(12). https://doi.org/10.1371/journal.pone.0029299

Tengborn, E., Moro, A. M., Nilsson, T., Alcorta, M., Borge, M. J. G., Cederkäll, J., Diget, C. A., Fraile, L. M., Fynbo, H. O. U., Gomez-Camacho, J., Jeppesen, H., Johansson, H. T., Jonson, B., Kirsebom, O. S., Knudsen, H. H., Madurga, M., Nyman, G., Richter, A., Riisager, K. ... Wenander, F. (2011). The ⁸Li + ²H reaction studied in inverse kinematics at 3.15 MeV/nucleon using the REX-ISOLDE post-accelerator. Physical Review C (Nuclear Physics), 84(6), 064616. https://doi.org/10.1103/PhysRevC.84.064616

Gelorini, V., Verbeken, A., Lens, L., Eggermont, H., Odgaard, B. V. & Verschuren, D. (2012). Effects of land use on the fungal spore richness in small crater-lake basins of western Uganda. Fungal Diversity, 55(1), 125-142. https://doi.org/10.1007/s13225-012-0155-z

Panitz, F., Hornshøj, H., Nielsen, R. O., Nielsen, M., Thomsen, B. & Bendixen, C. (2012). Pig Genome 10.2 Annotation and Gene Prediction using mRNA and microRNA Sequencing. Poster session presented at Plant and Animal Genome XX Conference, San Diego, CA, United States.

Krüger, A. C., Zhang, M., Groothoff, N., Malureanu, R. & Kristensen, M. (2011). Low-loss transmission band in photonic crystal waveguides with sharp cutoff at a frequency below the bandgap. Optics Communications, 284, 5434-5439. https://doi.org/10.1016/j.optcom.2011.07.073

Zhang, M., Krüger, A. C., Groothoff, N., Balle, T. & Kristensen, M. (2011). Relaxed fabrication tolerance for self-imaging photonic crystal waveguide splitters using a tapered multimode interference region. Optics Letters, 36(16), 3058-3060. https://doi.org/10.1364/OL.36.003058

Zhang, M., Groothoff, N., Krüger, A. C., Shi, P. & Kristensen, M. (2011). Direct slow-light excitation in photonic crystal waveguides forming ultra-compact splitters. Optics Express, 19(8). https://doi.org/10.1364/OE.19.007120

Krüger, A. C., Nielsen, M. M., Kjems, J., Besenbacher, F. & Birkedal, V. (2011). G-quadruplex structures in telomeric DNA studied with single molecule FRET microscopy. Poster session presented at Third International Meeting on G-Quadruplex and G-assembly, Sorrento, Italy. http://f1000.com/posters/browse?conferenceId=297

Krüger, A. C., Zhang, M., Groothoff, N., Malureanu, R. & Kristensen, M. (2011). A new approach to low loss photonic crystal waveguides. Abstract from Dansk Optisk Selskabs årsmøde 2011, Aarhus, Denmark.

Lühr, A. C., Hansen, D. C., Sobolevsky, N. & Bassler, N. (2011). Analytical expressions for water-to-air stopping-power ratios relevant for accurate dosimetry in particle therapy. Physics in Medicine and Biology, 56(8), 2515-2533. https://doi.org/10.1088/0031-9155/56/8/012

Larsen, K. & Bendixen, C. (2012). Characterization of the porcine FBX07 gene: the first step towards generation of a pig model for Parkinsonian pyramidal syndrome. Molecular Biology Reports, 39(2), 1517-1526. https://doi.org/10.1007/s11033-011-0890-3

Larsen, K., Madsen, L. B. & Bendixen, C. (2012). Porcine UCHL1: genomic organization, chromosome localization and expression analysis. Molecular Biology Reports, 39(2), 1095-1103. https://doi.org/10.1007/s11033-011-0836-9

Guosheng, S., Brøndum, R. F., Ma, P., Guldbrandtsen, B., Pedersen, G. & Lund, M. S. (2011). Genomic prediction using high-density SNP markers in Nordic Holstein and Red. In Presentations & Papers from the 2011 Interbull Open Meeting http://www.interbull.org/images/stories/Su.pdf

Milano, I., Babbucci, M., Panitz, F., Ogden, R., Nielsen, R. O., Taylor, M. I., Helyar, S. J., Carvalho, G. R., Espiñeira, M., Atanassova, M., Tinto, F., Maes, G. E., Patarnello, T., FishPopTrace Consortium & Bargelloni, L. (2011). Novel Tools for Conservation Genomics: Comparing Two High-Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake. PLoS One, 6(11), e28008. https://doi.org/10.1371/journal.pone.0028008

Zhan, B., Fadista, J., Thomsen, B., Hedegaard, J., Panitz, F. & Bendixen, C. (2011). Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping. BMC Genomics, 12(557). https://doi.org/10.1186/1471-2164-12-557

Guan, D., Bianchi, M., Bao, S., Perkins, E. W., Meier, F., Dil, J. H., Osterwalder, J. & Hofmann, P. (2011). Strongly enhanced electron-phonon coupling in the Rashba-split state of the Bi/Ag(111) surface alloy. Physical Review B, 83(15), 155451. https://doi.org/10.1103/PhysRevB.83.155451

Buttenschøn, H. N., Elfving, B., Foldager, L., Plougmann, P. H., Andersen, J. H., Bonde, J. P., Grynderup, M., Hansen, A. M., Kolstad, H., Kærgaard, A., Kærlev, L., Mikkelsen, S., Thomsen, J. F., Børglum, A., Wegener, G. & Mors, O. (2011). Depression og Val66Met polymorfien påvirker serum BDNF niveauet. Poster session presented at Psykiatriens 6. Forskningsdag, Risskov, Denmark.

Savolainen, J.-M., Christensen, M. S. & Balling, P. (2011). Material swelling as the first step in the ablation of metals by ultrashort laser pulses. Physical Review B, 84(19), 193410. https://doi.org/10.1103/PhysRevB.84.193410

Weber, R. E., Braunitzer, G. & Lalthantluanga, R. (1988). Functional characterization of fetal and adult yak hemoglobins: an oxygen cascade and its molecular basis. Archives of Biochemistry and Biophysics, 263(1), 199-203.

Weber, R. E., Hiebl, I. & Braunitzer, G. (1988). High altitude and hemoglobin function in the vultures Gyps rueppelli and Aegypius monachus. Biological Chemistry Hoppe-Seyler , 369, 233-240.

Weber, R. E. & Wells, R. M. G. (1989). Hemoglobin Structure and Function. In Lung Biology in Health and Disease: Comparative Pulmonary Physiology, Current Concepts (Vol. 39, pp. 279-310). Marcel Dekker, Inc.

Wells, R. M. G. & Weber, R. E. (1989). The measurement of oxygen affinity in blood and haemoglobin solutions. In C. R. Bridges & P. J. Butler (Eds.), Techniques in Comparative Respiratory Physiology: An Experimental Approach (pp. 279-303).

Hiebl, I., Weber, R. E., Schneeganss, D., Kösters, J. & Braunitzer, G. (1988). High altitude respiration of birds. Structural adaptations in the major and minor hemoglobin components of adult Ruppell's griffon (Gyps ruepellii, Aegypiinae): a new molecuilar pattern for hypoxic tolerance. Biological Chemistry Hoppe-Seyler , 369, 217-232.

Malte, H. & Weber, R. E. (1988). Respiratory stress in rainbow trout dying from aluminium exposure in soft, acid water, with and without added sodium chloride. Fish Physiology and Biochemistry, 5, 249-256.

Weber, R. E. & Jensen, F. B. (1988). Functional adaptations in hemoglobins from ectothermic vertebrates. Annual Review of Physiology, 50, 161-179.

Signatore, A. V., Stetefeld, J., Weber, R. E. & Campbell, K. L. (2012). Origin and mechanism of thermal insensitivity in mole hemoglobins: a test of the ‘additional’ chloride binding site hypothesis. Journal of Experimental Biology, 215(3), 518-525. https://doi.org/10.1242/jeb.063669

Storz, J. F., Weber, R. E. & Fago, A. (2012). Oxygenation properties and oxidation rates of mouse hemoglobins that differ in reactive cysteine content. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 161, 265-270. https://doi.org/10.1016/j.cbpa.2011.11.004

Rasmussen, C. & Mootz, K. (2011). Dynamic Image Analysis (DIA). Geologisk Nyt, (6).

Mairbäurl, H. & Weber, R. E. (2012). Oxygen Transport by Hemoglobin. Comprehensive Physiology, 2, 1463-1489. https://doi.org/10.1002/cphy.c080113

Mikkelsen, S., Holdensen, A. N., Vilsen, B. & Andersen, J. P. (2011). Darier disease mutation E917K/E918K of SERCA causes accumulation of the E2 form: Poster for the 13th international ATPase conference, Pacific Grove, CA, USA..

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