Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Wolf, A., Lammich, L., Strasser, D., Altevogt, S., Andrianarijaona, V., Buhr, H., Heber, O., Kreckel, H., Pedersen, H. B., Schwalm, D. & Zajfman, D. (2004). Storage ring experiments with cold molecular ions: the H₃⁺ Puzzle. Physica Scripta, T110, 193-199.

Pedersen, H. B., Buhr, H., Altevogt, S., Andrianarijaona, V., Kreckel, H., Lammich, L., de Ruette, N., Staicu-Casagrande, E. M., Schwalm, D., Strasser, D., Urbain, X., Zajfman, D. & Wolf, A. (2005). Storage ring studies on dissociative recombination and internal excitation of helium dimer ions. In A. Wolf, L. Lammich & P. Schmelcher (Eds.), Journal of Physics Conference Series: DR2004: Sixth International Conference on Dissociative Recombination: Theory, Experiments and Applications (Vol. 4, pp. 168-176). IOP Publishing.

Lammich, L., Strasser, D., Kreckel, H., Altevogt, S., Andrianarijaona, V., Buhr, H., Lange, M., Pedersen, H. B., Schwalm, D., Wolf, A. & Zajfman, D. (2005). DR rate coefficient measurements using stored beams of H3+ and its Isotopomers. In A. Wolf, L. Lammich & P. Schmelcher (Eds.), Journal of Physics Conference Series: DR2004: Sixth International Conference on Dissociative Recombination: Theory, Experiments and Applications (Vol. 4, pp. 98-103). IOP Publishing.

Frey, B. J., Weber, R. E., Aardt, W. J. V. & Fago, A. (1998). The haemoglobin system of the mudfish, Labeo capensis: adaptations to temperature and hypoxia. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 120(4), 735-742.

Fago, A., Wells, R. M. G. & Weber, R. E. (1997). Temperature-dependent enthalpy of oxygenation in Antarctic fish hemoglobins. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 118(2), 319-326.

Jespersen, S. N., Bjarkam, C. R., Nyengaard, J. R., Mallar, C., Hansen, B., Vosegaard, T., Østergaard, L., Yablonskiy, DA., Nielsen, N. C. & Vestergaard-Poulsen, P. (2010). Neurite density from magnetic resonance diffusion measurements at ultrahigh field: comparison with light microscopy and electron microscopy. NeuroImage, 49(1), 205-16. https://doi.org/10.1016/j.neuroimage.2009.08.053

Afshani, P., Arge, L. A. & Larsen, K. D. (2009). Orthogonal Range Reporting in Three and Higher Dimensions. Symposium on Foundations of Computer Science. Annual Proceedings, 149-158. https://doi.org/10.1109/FOCS.2009.58

Arge, L. A. & Revsbæk, M. (2009). I/O-Efficient Contour Tree Simplification. Lecture Notes in Computer Science. https://doi.org/10.1007/978-3-642-10631-6_116

Arge, L. A. (2009). Recent Advances in Worst-Case Efficient Range Search Indexing (Invited Paper). Lecture Notes in Computer Science, 3-4. https://doi.org/10.1007/978-3-642-02982-0_2

Arge, L. A. (2009). Worst-Case Efficient Range Searching: Invited Tutorial 2. In J. Paredaens & J. Su (Eds.), 28th Symposium on Principles of Database Systems: Proceedings (pp. 175-176). Association for Computing Machinery. https://doi.org/10.1145/1559795.1559822

Bertelsen, O. W. & Hedvall, P.-O. (2009). New Challenges for Participation in Participatory Design in Family, Clinical and Other Asymmetrical, Non-work Settings. Lecture Notes in Computer Science, 971-972. https://doi.org/10.1007/978-3-642-03658-3_136

Bønding, S. H., Cossins, A. P., Berenbrink, M., Williams, D. R. & Fago, A. (2009). Investigations of myoglobin function in the common carp (Cyprinus carpio). Abstract from International Congress of Respiratory Science - Abstracts & Scientific Program, Bad Honnef, Germany.

Gesser, H. & Overgaard, J. (2009). Comparative aspects of hypoxia tolerance of the ectothermic vertebrate heart. In M. L. Glass & S. C. Wood (Eds.), Cardio-respiratory control in vertebrates - Comparative and evolutionary aspects (pp. 263-284). Springer. https://doi.org/10.1007/978-3-540-93985-6

Taylor, E. W. & Wang, T. (2009). Control of the heart and of cardiorespiratory interactions in ectothermic vertebrates. In M. L. Glass & S. C. Wood (Eds.), Cardio-respiratory control in vertebrates - Comparative and evolutionary aspects (pp. 285-315). Springer. https://doi.org/10.1007/978-3-540-93985-6

Robador, A., Brüchert, V. & Jørgensen, B. B. (2009). The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environmental Microbiology, 11(7), 1692-1703. https://doi.org/10.1111/j.1462-2920.2009.01896.x

Teske, A., Jørgensen, B. B. & Gallardo, V. A. (2009). Filamentous bacteria inhabiting the sheaths of marine Thioploca spp. on the Chilean continental shelf. FEMS Microbiology Ecology, 68, 164-172. https://doi.org/10.1111/j.1574-6941.2009.00659.x

Eden, S., Barc, B., Mason, N. J., Hoffmann, S. V., Nunes, Y. & Limão-Vieira, P. (2009). Electronic state spectroscopy of C₂Cl₄. Chemical Physics, 365, 150-157. https://doi.org/10.1016/j.chemphys.2009.10.010

Nielsen, L. M., Holm, A. I. S., Varsano, D., Kadhane, U., Hoffmann, S. V., Di Felice, R., Rubio, A. & Nielsen, S. B. (2009). Fingerprints of Bonding Motifs in DNA Duplexes of Adenine and Thymine Revealed from Circular Dichroism: Synchrotron Radiation Experiments and TDDFT Calculations. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 113, 9614-9619. https://doi.org/10.1021/jp9032029

Lizzit, S., Baraldi, A., Grütter, C., Bilgram, J. H. & Hofmann, P. (2009). The surface phase transition and low-temperature phase of a-Ga(010) studiedby SPA-LEED. Surface Science, 603, 3222-3226. https://doi.org/10.1016/j.susc.2009.09.006

Canning, J., Kristensen, M., Skivesen, N., Martelli, C., Têtu, A. & Hagedorn Frandsen, L. (2009). Spectrally narrow polarisation conversion in a slow-light photonic crystal waveguide. Journal of the European Optical Society - Rapid Publications, 4.

Britz, D., Baronas, R., Gaidamauskaite, E. & Ivanauskas, F. (2009). Further comparisons of finite difference schemes for computational modelling of biosensors. Nonlinear Analysis, 14(4), 419-433.

Røy, H., Vopel, K., Huettel, M. & Jørgensen, B. B. (2009). Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum. Marine Biology, 156, 669-677. https://doi.org/10.1007/s00227-008-1117-6

Hoehler, T. M. & Jørgensen, B. B. (2009). Energy emerges. Environmental Microbiology, 1, 9-10. https://doi.org/10.1111/j.1758-2229.2008.00010.x

Wassmann, P., Jørgensen, B. B., Reigstad, M. & Slagstad, D. (2009). Sedimentation and degradation of biogenic matter. In E. Sakshaug, G. Johnsen & K. Kovacs (Eds.), Ecosystem Barents Sea (pp. 323-338). TAPIR Akademisk Forlag.

Mayntz, D., Toft, S. & Vollrath, F. (2009). Nutrient balance affects foraging behaviour of a trap-building predator. Biology Letters, 5, 735-738. https://doi.org/10.1098/rsbl.2009.0431

Nevo, I., Holmegaard, L., Nielsen, J. H., Hansen, J. L., Stapelfeldt, H., Filsinger, F., Meijer, G. & Küpper, J. (2009). Laser-induced 3D alignment and orientation of quantum state-selected molecules. Physical Chemistry Chemical Physics, 11(42), 9912-9918. https://doi.org/10.1039/b910423b

Zhan, B., Andersen, P. K., Hedegaard, J., Bendixen, C. & Panitz, F. (2009). Comparison of assembly strategies for high throughput de novo sequencing of bacterial genomes: Poster U45. Poster session presented at ISMB/ECCB 2009 - Seventeenth Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) / Eighth Annual European Conference on Computational Biology (ECCB), Stockholm, Sweden.

Hornshøj, H., Panitz, F., Hedegaard, J., Conley, L. N., Nielsen, R. O. & Bendixen, C. (2009). Prediction of splice junctions and exon-skipping events in porcine tissues from alignments of next-generation RNA short reads to the genome sequence: Poster no. 27. Poster session presented at Pig Genome III Conference, Hinxton, Cambridge, United Kingdom.

Thomsen, B., Hansen, J. H., Hedegaard, J., Nielsen, R. O., Panitz, F. & Bendixen, C. (2009). MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing: Poster no 45. Poster session presented at Pig Genome III Conference, Hinxton, Cambrige, United Kingdom.

Zhan, B., Hedegaard, J., Fadista, J., Panitz, F. & Bendixen, C. (2009). Global single nucleotide polymorphism discovery by whole genome sequencing a single: Poster no 47. Poster session presented at Pig Genome III Conference, Hinxton, Cambridge, United Kingdom.

Nielsen, L. R. & Højsgaard, S. (2009). Koens økonomiske værdi. Ny KvægForskning, 7(5), 8-9.

Fadista, J. (2009). Copy number variation in the cattle polled locus. Poster session presented at SAFE Science Day, Foulum, Denmark.

Jiang, L., Sørensen, P., Workman, C. & Skarman, A. (2009). Gene prioritization using text mining and protein-protein interaction in livestock species. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology & 8th European Conference on Computational Biology, ISMB/ECCB, Stockholm, Sweden. http://bioinformatics.oxfordjournals.org/content/vol25/issue12/

Filsinger, F., Küpper, J., Meijer, G., Hansen, J. L., Maurer, J., Nielsen, J. H., Holmegaard, L. & Stapelfeldt, H. (2009). Pure Samples of Individual Conformers: The Separation of Stereoisomers of Complex Molecules Using Electric Fields. Angewandte Chemie International Edition, 48(37), 6900-6902. https://doi.org/10.1002/anie.200902650

Filsinger, F., Küpper, J., Meijer, G., Holmegaard, L., Nielsen, J. H., Nevo, I., Hansen, J. L. & Stapelfeldt, H. (2009). Quantum-state selection, alignment, and orientation of large molecules using static electric and laser fields. Journal of Chemical Physics, 131(6), 064309. https://doi.org/10.1063/1.3194287

Holmegaard, L., Nielsen, J. H., Nevo, I., Stapelfeldt, H., Filsinger, F., Küpper, J. & Meijer, G. (2009). Laser-Induced Alignment and Orientation of Quantum-State-Selected Large Molecules. Physical Review Letters, 102(2), 023001. https://doi.org/10.1103/PhysRevLett.102.023001

Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2009). Site Preferences of Fluoride Guest Ions in the Calcium Silicate Phases of Portland Cement from ²⁹Si{¹⁹F} CP-REDOR NMR Spectroscopy. Journal of the American Chemical Society, 131(40), 14170-14171. https://doi.org/10.1021/ja905223d

Viftrup, S. S., Kumarappan, V., Holmegaard, L., Bisgaard, C., Stapelfeldt, H., Artamonov, M., Hamilton, E. & Seideman, T. (2009). Controlling the rotation of asymmetric top molecules by the combination of a long and a short laser pulse. Physical Review A, 79(2), 023404. https://doi.org/10.1103/PhysRevA.79.023404

Christiansen, F. & Fenchel, T. (2009). Evolution - Den forudsigelige vilkårlighed. Aarhus Universitetsforlag.

Schou, T. W., Labouriau, R., Permin, A., Christensen, J. P., Sørensen, P., Cu, H. P., Nguyen, V. K. & Juul-Madsen, H. R. (2010). MHC haplotype and susceptibility to experimental infections (Salmonella Enteritidis, Pasteurella multocida orAscaridia galli) in a commercial and an indigenous chicken breed. Veterinary Immunology and Immunopathology, 135(1-2), 52-63. https://doi.org/10.1016/j.vetimm.2009.10.030

Hedegaard, C., Bendixen, E., Jensen, P. H., Bendixen, C. & Larsen, K. (2009). An Exonic Insertion Encodes an Alanine Stretch in Porcine Synapsin I. Biochemical Genetics, 47(11-12), 812-816. https://doi.org/10.1007/s10528-009-9279-6

de Souza-Pinto, N., A. Mason, P., Hashiguchi, K., Weismann, L., Tian, J., Guay, D., Lebel, M., Stevnsner, T. V., Rasmussen, L. J. & Bohr, V. (2009). Novel DNA mismatch-repair activity involving YB-1 in human mitochondria. DNA Repair, 8(6), 704-719.

Sørensen, M., Christensen, K., Stevnsner, T. V. & Christiansen, L. (2009). The Mn-superoxide dismutase single nucleotide polymorphism rs4880 and the glutathione peroxidase 1 single nucleotide polymorphism rs1050450 are associated with aging and longevity in the oldest old. Mechanisms of Ageing and Development, 130(5).

Sørensen, M., Diaz, R. G., Müller-Ohldach, M., Werner, A., Bohr, V., Osiewacz, H. D. & Stevnsner, T. V. (2009). A potential impact of DNA repair on ageing and lifespan in the ageing model organism Podospora anserine: decrease in mitochondrial DNA repair activity during ageing. Mechanisms of Ageing and Development, 130(8), 487-496.

Poulsen, S. L., Kocaba, V., Le Saoût, G., Jakobsen, H. J., Scrivener, K. L. & Skibsted, J. (2009). Improved quantification of alite and belite in anhydrous Portland cements by ²⁹Si MAS NMR: Effects of paramagnetic ions. Solid State Nuclear Magnetic Resonance, 36, 32.

Poulsen, S. L., Jakobsen, H. J. & Skibsted, J. (2009). Methodologies for measuring the degree of reaction in Portland cement blends with supplementary cementitious materials by ²⁷Al and ²⁹Si MAS NMR spectroscopy. Paper presented at IBAUSIL, Weimar, Germany.

Wilson, M., Hanlon, R., Tyack, P. L. & Madsen, P. T. (2008). Big bang? Intense ultrasound does not have any detectable effects on the squid Loligo pealeii. Bioacoustics - the International Journal of Animal Sound and its Recording, 321-323.

Yde, J. C. & Knudsen, N. T. (2009). Surge-Type Glaciers on Disko Island, Greenland. In M. I. Krugger & H. P. Stern (Eds.), New Permafrost and Glacier Research (pp. 283-297). Nova Science Publishers.

Filsinger, F., Küpper, J., Meijer, G., Hansen, J. L., Maurer, J., Nielsen, J. H., Holmegaard, L. & Stapelfeldt, H. (2009). Reine Proben einzelner Konformere: die Trennung von Stereoisomeren komplexer Moleküle mittels elektrischer Felder. Angewandte Chemie International Edition, 121(37), 7033 - 7035. https://doi.org/10.1002/ange.200902650

Pearce, B. D., Grove, J., Bonney, E. A., Bliwise, N., Dudley, D. J., Schendel, D. & Thorsen, P. (2010). Interrelationship of cytokines, hypothalamic-pituitary-adrenal axis hormones, and psychosocial variables in the prediction of preterm birth. Gynecologic and Obstetric Investigation, 70(1), 40-46. https://doi.org/10.1159/000284949

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