Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Otzen, D. E. (2024). Antibodies and α-synuclein: What to target against Parkinson's Disease? B B A - Proteins and Proteomics, 1872(2), Article 140943. https://doi.org/10.1016/j.bbapap.2023.140943

Ali, S. A., Chung, K. H. K., Forgham, H., Olsen, W. P., Kakinen, A., Balaji, A., Otzen, D. E., Davis, T. P. & Javed, I. (2023). Alzheimer's Progenitor Amyloid-β Targets and Dissolves Microbial Amyloids and Impairs Biofilm Function. Advanced Science, 10(29), Article e2301423. https://doi.org/10.1002/advs.202301423

Ding, P., Wang, S., Mattioli, C., Li, Z., Shi, G., Sun, Y., Gourdon, A., Kantorovich, L., Besenbacher, F., Rosei, F. & Yu, M. (2023). Extending on-surface synthesis from 2D to 3D by cycloaddition with C₆₀. Nature Communications, 14(1), Article 6075. https://doi.org/10.1038/s41467-023-41913-3

Tafesse, B., Bekele, T., Demissew, S., Dullo, B. W., Nemomissa, S. & Chala, D. (2023). Conservation implications of mapping the potential distribution of an Ethiopian endemic versatile medicinal plant, Echinops kebericho Mesfin. Ecology and Evolution, 13(5), Article e10061. https://doi.org/10.1002/ece3.10061

Hubenschmid, S., Zagermann, J., Leicht, D., Reiterer, H. & Feuchtner, T. (2023). ARound the Smartphone: Investigating the Effects of Virtually-Extended Display Size on Spatial Memory. In CHI 2023 - Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems (pp. 1-15). Article 527 Association for Computing Machinery. https://doi.org/10.1145/3544548.3581438

Sette, M., Johnson, L. A., Jimenez, R. & Mulder, F. A. A. (2023). Backbone ¹H, ¹⁵N and ¹³C resonance assignments of the 27kDa fluorescent protein mCherry. Biomolecular NMR Assignments, 17(2), 243-247. https://doi.org/10.1007/s12104-023-10149-z

Jaussi, M., Jørgensen, B. B., Kjeldsen, K. U., Lomstein, B. A., Pearce, C., Seidenkrantz, M.-S. & Røy, H. (2023). Cell-specific rates of sulfate reduction and fermentation in the sub-seafloor biosphere. Frontiers in Microbiology, 14, Article 1198664. https://doi.org/10.3389/fmicb.2023.1198664

Castarède, D., Brasseur, Z., Wu, Y., Kanji, Z. A., Hartmann, M., Ahonen, L., Bilde, M., Kulmala, M., Petäjä, T., Pettersson, J. B. C., Sierau, B., Stetzer, O., Stratmann, F., Svenningsson, B., Swietlicki, E., Thu Nguyen, Q., Duplissy, J. & Thomson, E. S. (2023). Development and characterization of the Portable Ice Nucleation Chamber 2 (PINCii). Atmospheric Measurement Techniques, 16(16), 3881-3899. https://doi.org/10.5194/amt-16-3881-2023

Rodriguez-Palomo, A., Østergaard, M. & Birkedal, H. (2024). Bone Hierarchical Structure: Heterogeneity and Uniformity. Advanced Functional Materials, 34(35), Article 2307026. https://doi.org/10.1002/adfm.202307026

Gligorescu, A., Chen, L., Jensen, K., Nasiri Moghadam, N., Kristensen, T. N. & Sørensen, J. G. (2023). Rapid evolutionary adaptation to diet composition in the black soldier fly (Hermetia illucens). Insects, 14(10), Article 821. https://doi.org/10.3390/insects14100821

Støckler, L. J., Christensen, R. S., Kløve, M., Bertelsen, A. D., Borup, A. B., Krause, L., Takahashi, S., Fujita, T., Kasai, H., Inoue, I., Nishibori, E. & Iversen, B. B. (2023). Pair Distribution Function from Liquid Jet Nanoparticle Suspension using Femtosecond X-ray Pulses. ChemPhysChem, 24(23), Article e202300407. https://doi.org/10.1002/cphc.202300407

Alstrup, A. K. O. & Wang, T. (2023). Meiofaunaens tilpasninger til livet i det små. Kaskelot, 248, 28-31.

Politi, T., Zilius, M., Bartoli, M., Cardini, U., Marzocchi, U. & Bonaglia, S. (2023). Direct contribution of invertebrate holobionts to methane release from coastal sediments. Limnology and Oceanography Letters, 8(6), 876-884. https://doi.org/10.1002/lol2.10361

Engsvang, M., Wu, H., Knattrup, Y., Kubečka, J., Jensen, A. B. & Elm, J. (2023). Quantum chemical modeling of atmospheric molecular clusters involving inorganic acids and methanesulfonic acid. Chemical Physics Reviews, 4(3), Article 031311 . https://doi.org/10.1063/5.0152517

Díaz-Rodríguez, M., Nielsen, T. K., Maier, A. & Riede, F. (2023). An Annotated Compilation of Chronometric Dates for the Middle-Upper Palaeolithic Transition (45-30 ka BP) in Northern Iberia (Spain). Journal of Open Archaeology Data, 11, 1-10. Article 10. https://doi.org/10.5334/joad.113

Nyrup, R. (2023, Oct 13). Opening the black box: Transparency in AI is not enough. https://iai.tv/articles/opening-the-black-box-auid-2630

Kent, O., Sunde, P., Vedel-Smith, C., Hansen, M. M. & Thomsen, P. F., (2023). Statusrapport fra den nationale overvågning af ulv (Canis lupus) i Danmark: 4. kvartal 2022, 29 p., Fagligt notat fra DCE – Nationalt Center for Miljø og Energi Vol. 2023 No. 31 https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Notater_2023/N2023_31.pdf

Carter, J. (2024). Experimental Mathematics in Mathematical Practice. In B. Sriraman (Ed.), Handbook of the History and Philosophy of Mathematical Practice (Vol. 4, pp. 2419–2430). Springer. https://doi.org/10.1007/978-3-031-40846-5_121

Carter, J. (Ed.) (2024). Handbook of the History and Philosophy of Mathematical Practice: Section on Experimental Mathematics. Springer Nature.

Ng, C., Samanta, A., Mandrup, O. A., Tsang, E., Youssef, S., Klausen, L. H., Dong, M., Nijenhuis, M. A. D. & Gothelf, K. V. (2023). Folding Double-Stranded DNA into Designed Shapes with Triplex-Forming Oligonucleotides. Advanced Materials, 35(40), Article 2302497. https://doi.org/10.1002/adma.202302497

Haselwarter, P. G., Rivas, E., Van Muylder, A., Winterhalter, T., Abate, C., Sidorenco, N., Hriţcu, C., Maillard, K. & Spitters, B. (2023). SSProve: A Foundational Framework for Modular Cryptographic Proofs in Coq. ACM Transactions on Programming Languages and Systems, 45(3), 61. Article 15. https://doi.org/10.1145/3594735

Amin, H., Nolte, S. S., Swain, B. & von Philipsborn, A. C. (2023). GABAergic signaling shapes multiple aspects of Drosophila courtship motor behavior. iScience, 26(11), Article 108069. https://doi.org/10.1016/j.isci.2023.108069

Madsen, O. L. (2023). Using Object-Sequence Diagrams for Debugging. In E. Gonzalez Boix & C. Scholliers (Eds.), DEBT 2023: Proceedings of the 1st ACM International Workshop on Future Debugging Techniques (pp. 11-22). Association for Computing Machinery. https://doi.org/10.1145/3605155.3605864

Madsen, O. L. & Møller-Pedersen, B. (2023). What your mother forgot to tell you about modeling – and programming. In 2023 ACM/IEEE International Conference on Model Driven Engineering Languages and Systems Companion (MODELS-C) (pp. 200-210). IEEE. https://doi.org/10.1109/MODELS-C59198.2023.00049

Andersen, M. K., Willot, Q. & MacMillan, H. A. (2023). A neurophysiological limit and its biogeographic correlations: cold-induced spreading depolarization in tropical butterflies. Journal of Experimental Biology, 226(18), Article jeb246313. https://doi.org/10.1242/jeb.246313

Benavente, N. R., Vara-Vela, A. L., Nascimento, J. P., Acuna, J. R., Damascena, A. S., de Fatima Andrade, M. & Yamasoe, M. A. (2023). Air quality simulation with WRF-Chem over southeastern Brazil, part I: Model description and evaluation using ground-based and satellite data. Urban Climate, 52, Article 101703. https://doi.org/10.1016/j.uclim.2023.101703

Zajac, M., Song, J., Skocek, J., Ben Haha, M. & Skibsted, J. (2023). Composite cements with aqueous and semi-dry carbonated recycled concrete pastes. Construction and Building Materials, 407, Article 133362. https://doi.org/10.1016/j.conbuildmat.2023.133362

Pedersen, H. B., Abildgaard, A. F., Søtang Jacobsen, M. & Juul, H. (2023). A modular experimental system for teaching fluid dynamics with Faraday waves. European Journal of Physics, 44(6), Article 065002. https://doi.org/10.1088/1361-6404/acf1df

Morin, L., Raymond, N. & Vu Ngoc, S. (2023). Eigenvalue Asymptotics for Confining Magnetic Schrödinger Operators with Complex Potentials. International Mathematics Research Notices, 2023(17), 14547-14593. https://doi.org/10.1093/imrn/rnac230

Idzuchi, H., Llacsahuanga Allcca, A. E., Haglund, A. V., Pan, X. C., Matsuda, T., Tanigaki, K., Mandrus, D. & Chen, Y. P. (2023). On the Optical Properties of Cr₂Ge₂Te₆ and Its Heterostructure. Condensed Matter, 8(3), Article 59. https://doi.org/10.3390/condmat8030059

Vang, M., Grombacher, D., Griffiths, M. P., Liu, L. & Larsen, J. J. (2023). Technical note: High-density mapping of regional groundwater tables with steady-state surface nuclear magnetic resonance - three Danish case studies. Hydrology and Earth System Sciences, 27(16), 3115-3124. https://doi.org/10.5194/hess-27-3115-2023

Kaasik, M., Chen, P.-P., Ricko, S., Jørgensen, K. A. & Houk, K. N. (2023). Asymmetric [4 + 2], [6 + 2], and [6 + 4] Cycloadditions of Isomeric Formyl Cycloheptatrienes Catalyzed by a Chiral Diamine Catalyst. Journal of the American Chemical Society, 145(43), 23874-23890. https://doi.org/10.1021/jacs.3c09551

Dahl, J. F., Gregersen, S. B., Andersen, U., Schulz, H.-J. & Corredig, M. (2024). Small and large deformation rheology on pizza cheese as an example of application to study anisotropic properties of food soft materials. Food Hydrocolloids, 148(Part A), Article 109456. https://doi.org/10.1016/j.foodhyd.2023.109456

Sun, C., Desch, K., Nassim-Assir, B., Giandomenico, S. L., Nemcova, P., Langer, J. D. & Schuman, E. M. (2023). An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science, 380(6647), Article 811. https://doi.org/10.1126/SCIENCE.ADF2018

Sâm, L. Ý. N., Baker, W. J., Bellot, S., Dransfield, J., Eiserhardt, W. L. & Henderson, A. (2023). Truongsonia (Arecaceae: Arecoideae: Truongsonieae)—a new palm genus and tribe from Vietnam. Phytotaxa, 613(3), 201-212. https://doi.org/10.11646/phytotaxa.613.3.1

Crossley, J. L., Smith, B., Tull, M., Elsey, R. M., Wang, T. & Crossley, D. A. (2023). Hypoxic incubation at 50% of atmospheric levels shifts the cardiovascular response to acute hypoxia in American alligators, Alligator mississippiensis. Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology, 193(5), 545-556. https://doi.org/10.1007/s00360-023-01510-8

Lu, K., Jähnig, S. C., Wu, H., Xie, Z., Chen, X. & He, F. (2023). Trait-based approach of aquatic insects to track recovery of wetland ecosystems in Northeast China. Ecological Indicators, 155, Article 111012. https://doi.org/10.1016/j.ecolind.2023.111012

Schneiders, E., Boudouraki, A., Reyes-Cruz, G., Martinez Avila, J. P., Elmimouni, H., Grønbæk, J. E. S., Rintel, S. & Joshi, S. (2023). Mobility and Utility in Robot Mediated Interaction: An Interactive Workshop for the Identification of Use Cases and Affordances of Telepresence Robots. In A. Komninos, C. Santoro, D. Gavalas, J. Schoening, M. Matera & L. A. Leiva (Eds.), Proceedings of the 25th International Conference on Mobile Human-Computer Interaction, MobileHCI 2023 Companion Article 34 Association for Computing Machinery. https://doi.org/10.1145/3565066.3609791

Ullah, I., Tariq, M., Muhammad, M., Khan, J., Rahim, A. & Abdullah, A. Z. (2023). UV photocatalytic remediation of Methyl Red in aqueous medium by sulfate (SO₄^•-) and hydroxyl (^•OH) radicals in the presence of Fe²⁺and Co@TiO₂ NPs photocatalysts. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 679, Article 132614. https://doi.org/10.1016/j.colsurfa.2023.132614

Ertini, K., Folatelli, G., Martinez, L., Bersten, M. C., Anderson, J. P., Ashall, C., Baron, E., Bose, S., Brown, P. J., Burns, C., Derkacy, J. M., Ferrari, L., Galbany, L., Hsiao, E., Kumar, S., Lu, J., Mazzali, P., Morrell, N., Orellana, M. ... Englert, B. (2023). SN 2021gno: a calcium-rich transient with double-peaked light curves. Monthly Notices of the Royal Astronomical Society, 526(1), 279-298. https://doi.org/10.1093/mnras/stad2705

Joyce, W. (2023). Muscle growth and plasticity in teleost fish: the significance of evolutionarily diverse sarcomeric proteins. Reviews in Fish Biology and Fisheries, 33(4), 1311-1327. https://doi.org/10.1007/s11160-023-09800-8

Goldberg, M., Fabrycky, D., Martin, D. V., Albrecht, S., Deeg, H. J. & Nowak, G. (2023). A 5M_Jupnon-Transiting coplanar circumbinary planet around Kepler-1660AB. Monthly Notices of the Royal Astronomical Society, 525(3), 4628-4641. https://doi.org/10.1093/mnras/stad2568

Petit, G., Mencuccini, M., Carrer, M., Prendin, A. L. & Hölttä, T. (2023). Axial conduit widening, tree height, and height growth rate set the hydraulic transition of sapwood into heartwood. Journal of Experimental Botany, 74(17), 5072-5087. https://doi.org/10.1093/jxb/erad227

Hoeks, S., Huijbregts, M. A. J., Boonman, C. C. F., Faurby, S., Svenning, J.-C., Harfoot, M. B. J. & Santini, L. (2023). Shifts in ecosystem equilibria following trophic rewilding. Diversity and Distributions, 29(12), 1512-1526. https://doi.org/10.1111/ddi.13786

Lu, R., Xie, Z., Christensen, C. S. Q., Luo, S., Nazari, P., Yousefi, O., Wang, Y. & Wei, Z. (2023). A photo-regenerable sponge filter to continuously remove hydrophobic and hydrophilic pollutants for water reuse. Chemical Engineering Journal, 476(146695), Article 146695. https://doi.org/10.1016/j.cej.2023.146695

Christiansen, A. V., Foged, N. & Rawlinson, Z. (2022). Combining boreholes and Airborne EM for automatic generation of hydrostratigraphic model Realizations. In 3rd Conference on Airborne, Drone and Robotic Geophysics, Held at the Near Surface Geoscience Conference and Exhibition 2022, NSG 2022 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.202220151

Wang, L., Kim, H., Hansen, B., Christiansen, A. V., Vilhelmsen, T. N. & Caers, J. (2023). Statistical modeling of three-dimensional redox architecture from non-colocated redox borehole and transient electromagnetic data. Hydrogeology Journal, 31(6), 1475-1490. https://doi.org/10.1007/s10040-023-02640-7

Zamora-Luria, J. C., McLachlan, P., Grombacher, D., Maurya, P. K. & Christiansen, A. V. (2022). Monitoring water table variations in an unconfined aquifer using a time-lapse TEM method. In 28th European Meeting of Environmental and Engineering Geophysics, Held at the Near Surface Geoscience Conference and Exhibition 2022, NSG 2022 European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.202220032

Golbek, T. W. & Weidner, T. (2023). Peptide Orientation Strongly Affected by the Nanoparticle Size as Revealed by Sum Frequency Scattering Spectroscopy. The Journal of Physical Chemistry Letters, 14(44), 9819-9823. https://doi.org/10.1021/acs.jpclett.3c01751

Cattermull, J., Roth, N., Cassidy, S. J., Pasta, M. & Goodwin, A. L. (2023). K-Ion Slides in Prussian Blue Analogues. Journal of the American Chemical Society, 145(44), 24249-24259. https://doi.org/10.1021/jacs.3c08751

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