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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Meyer, R. L., Iversen, A., Pillai, S., Bischoff, C. & Besenbacher, F. (2008). Nanofunctionalised sol-gel surface coatings for biofilm prevention. Paper presented at Nanotech Northern Europe, Copenhagen, Denmark.

Meyer, R. L., Nielsen, J. L. & Nielsen, P. H. (2008). Bacterial adhesion structures studied by the combination of atomic force- and fluorescence microscopy. Paper presented at Biofilms III, München, Germany.

Mohanakrishnan, J., Gutierrez, O., Meyer, R. L., Yuan, Z. & Keller, J. (2007). Effect of oxygen on sulfide production within (laboratory scale) sewer biofilms. Paper presented at Biofilm IV, Quebec, Canada.

Mohanakrishnan, J., Sharma, K. R., Meyer, R. L., Keller, J. & Yuan, Z. (2007). Variation in biofilm structure and activity along a rising sewer main. Paper presented at SPN5, Amsterdam, Netherlands.

Risgaard-Petersen, N., Meyer, R. L., Schramm, A. & Revsbech, N. P. (2005). Anaerobic ammonium oxidation and the micro distribution of nitrite in sediments. Paper presented at American Society for Limnology and Oceanography.

Meyer, R. L., Zeng, R., Giugliano, V., Keller, J. & Blackall, L. L. (2004). Production of N₂O from denitrifying bacteria using stored carbon as electron donor. Paper presented at International Symposium for Microbial Ecology, Cancun, Mexico.

Villesen, P., Madsen, B. E. & Wiuf, C. H. (2008). Short Tandem Repeats in Human Exons: A Target for Disease Mutations. Poster session presented at Frontiers in genomics, Denmark.

Lægaard, S. (2008). Elatine rotundifolia sp. nov. (Elatinaceae) from Ecuador. Nordic Journal of Botany, 26, 235-236. https://doi.org/10.1111/j.1756-1051.2008.00292.x.

Lægaard, S. (2008). Botaniske kulturrelikter.

Thirup, S. S., Petersen, C. M., Quistgaard, E. M. H., Madsen, P. S., Nissen, P., Grøftehauge, M. K., Cramer, J. F. & Andersen, J. L. (2010). Design of specific ligands to Sortilin. (Patent No. PA 2008 00592).

Ankjærgaard, C., Denby, P. M., Murray, A. S. & Jain, M. (2008). Charge movement in grains of quartz studied using exo-electron emission. Radiation Measurements, 43, 273-277.

Bjørnsen, M., Clemmensen, L. B., Pedersen, K. & Murray, A. S. (2008). New evidence of the Littorina transgressions in Kattegat - OSL dating of a beach ridge system on Anholt, Denmark. Boreas, 37, 157-168.

Thirup, S. S., Grøftehauge, M. K., Madsen, P. S., Petersen, C. M., Nissen, P., Quistgaard, E. M. H., Andersen, J. L. & Cramer, J. F. (2010). Design and use of Sortilin specific molecular imaging ligands. (Patent No. PA 2008 00593).

Norry, F. M., Scannapieco, A. C., Sambucetti, P. & Loeschcke, V. (2008). QTL for the thermotolerance effect of heat hardening, knockdown resistance to heat and chill-coma recovery in an intercontinental set of recombinant inbred lines of Drosophila melanogaster. Molecular Ecology, 17(20), 4570-4581. https://doi.org/10.1111/j.1365-294X.2008.03945.x

Buylaert, J. P., Murray, A. S., Vandenberghe, D., Vriend, M., De Corte, F. & Van den Haute, P. (2008). Optical dating of Chinese loess using sand-sized quartz: Establishing a time frame for Late Pleistocene climate changes in the western part of the Chinese Loess Plateau. Quaternary Geochronology, 3, 99-113.

Buylaert, J. P., Murray, A. S. & Huot, S. (2008). Optical dating of an Eemian site in Northern Russia using K-feldspar. Radiation Measurements, 43, 715-720.

Quistgaard, E. M., Madsen, P., Grøftehauge, M. K., Nissen, P., Petersen, C. M. & Thirup, S. S. (2009). Ligands bind to Sortilin in the tunnel of a ten-bladed beta-propeller domain. Nature Structural and Molecular Biology, 16(1), 96-8. https://doi.org/10.1038/nsmb.1543

Chen, Y. W., Chen, Y. G., Murray, A. S., Watanuki, T., Chen, W. S., Yang, C. C. B., Liu, T. K. & Lin, C. W. (2009). Long-term crustal movement caused by the Chiuchiungkeng Fault in southwestern Taiwan: Constraints from luminescence dating. Quaternary International, 199, 15-24.

Cunha, P. P., Martins, A. A., Huot, S., Murray, A. S. & Raposo, L. (2008). Dating the Tejo river lower terraces in the Ródão area (Portugal) to assess the role of tectonics and uplift. Geomorphology, 102, 43-54.

Greilich, S., Murray, A. S. & Bøtter-Jensen, L. (2008). Simulation of electron transport during beta irradiation. Radiation Measurements, 43, 748-751.

Henriksen, M., Mangerud, J., Matiouchkov, A., Murray, A. S., Paus, A. & Svendsen, J. I. (2008). Intriguing climatic shifts in a 90 kyr long lake record from northern Russia. Boreas, 37, 20-37.

Lunkka, J. P., Murray, A. S. & Korpela, K. (2008). Weichselian sediment succession at Ruunaa, Finland, indicating a Mid-Weichselian ice-free interval in eastern Fennoscandia. Boreas, 37, 234-244.

Discipio, R. G., Jenner, L., Thirup, S., Sottrup-Jensen, L., Nyborg, J. & Stura, E. (1998). Crystallization of human complement component C5. Acta Crystallographica. Section D: Biological Crystallography, 54(Pt 4), 643-6.

Jenner, L., Husted, L., Thirup, S., Sottrup-Jensen, L. & Nyborg, J. (1998). Crystal structure of the receptor-binding domain of alpha 2-macroglobulin. Structure, 6(5), 595-604.

Morthekai, P., Jain, M., Murray, A. S., Thomsen, K. J. & Bøtter-Jensen, L. (2008). Fading characteristics of martian analogue materials and the applicability of a correction procedure. Radiation Measurements, 43, 672-678.

Murray, A. S., Buylaert, J. P., Henriksen, M., Svendsen, J. I. & Mangerud, J. (2008). Testing the reliability of quartz OSL ages beyond the Eemian. Radiation Measurements, 43, 776-780.

Kristensen, O., Reshetnikova, L., Nissen, P., Siboska, G., Thirup, S. & Nyborg, J. (1996). Isolation, crystallization and X-ray analysis of the quaternary complex of Phe-tRNA(Phe), EF-Tu, a GTP analog and kirromycin. FEBS Letters, 399(1-2), 59-62.

Polekhina, G., Thirup, S., Kjeldgaard, M., Nissen, P., Lippmann, C. & Nyborg, J. (1996). Helix unwinding in the effector region of elongation factor EF-Tu-GDP. Structure, 4(10), 1141-51.

Dolmer, K., Jenner, L. B., Jacobsen, L., Andersen, G. R., Koch, T. J., Thirup, S., Sottrup-Jensen, L. & Nyborg, J. (1995). Crystallisation and preliminary X-ray analysis of the receptor-binding domain of human and bovine alpha 2-macroglobulin. FEBS Letters, 372(1), 93-5.

Ramzaev, V., Bøtter-Jensen, L., Thomsen, K., Andersson, K. G. & Murray, A. S. (2008). An assessment of cumulative external doses from Chernobyl fallout for a forested area in Russia using the optically stimulated luminescence from quartz inclusions in bricks. Journal of Environmental Radioactivity, 99, 1154-1160.

Nyborg, J., Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Clark, B. F. & Reshetnikova, L. (1997). Macromolecular mimicry in protein biosynthesis. Structure, 2(3), S7-11.

Nyborg, J., Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G. & Clark, B. F. (1996). Structure of the ternary complex of EF-Tu: macromolecular mimicry in translation. Trends in Biochemical Sciences, 21(3), 81-2.

Nissen, P., Kjeldgaard, M., Thirup, S., Clark, B. F. & Nyborg, J. (1996). The ternary complex of aminoacylated tRNA and EF-Tu-GTP. Recognition of a bond and a fold. Biochimie, 78(11-12), 921-33.

Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F. & Nyborg, J. (1995). Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. Science, 270(5241), 1464-72.

Bøgestrand, S., Wiborg, O., Thirup, S. & Nyborg, J. (1995). Analysis and crystallization of a 25 kDa C-terminal fragment of cloned elongation factor Ts from Escherichia coli. FEBS Letters, 368(1), 49-54.

Nissen, P., Reshetnikova, L., Siboska, G., Polekhina, G., Thirup, S., Kjeldgaard, M., Clark, B. F. & Nyborg, J. (1994). Purification and crystallization of the ternary complex of elongation factor Tu:GTP and Phe-tRNA(Phe). FEBS Letters, 356(2-3), 165-8.

Andersen, G. R., Koch, T., Sørensen, A. H., Thirup, S., Nyborg, J., Dolmer, K., Jacobsen, L. & Sottrup-Jensen, L. (1994). Crystallization of proteins of the alpha 2-macroglobulin superfamily. New York Academy of Sciences. Annals, 737, 444-6.

Kjeldgaard, M., Nissen, P., Thirup, S. & Nyborg, J. (1993). The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. Structure, 1(1), 35-50.

Andersen, G. R., Jacobsen, L., Thirup, S., Nyborg, J. & Sottrup-Jensen, L. (1991). Crystallization and preliminary X-ray analysis of methylamine-treated alpha 2-macroglobulin and 3 alpha 2-macroglobulin-proteinase complexes. FEBS Letters, 292(1-2), 267-70.

Clark, B. F., Kjeldgaard, M., la Cour, T. F., Thirup, S. & Nyborg, J. (1990). Structural determination of the functional sites of E. coli elongation factor Tu. BBA General Subjects, 1050(1-3), 203-8.

Thirup, S. & Larsen, N. E. (1990). ALMA, an editor for large sequence alignments. Proteins: Structure, Function, and Bioinformatics, 7(3), 291-5. https://doi.org/10.1002/prot.340070310

Jones, T. A. & Thirup, S. (1986). Using known substructures in protein model building and crystallography. E M B O Journal, 5(4), 819-22.

la Cour, T. F., Nyborg, J., Thirup, S. & Clark, B. F. (1985). Structural details of the binding of guanosine diphosphate to elongation factor Tu from E. coli as studied by X-ray crystallography. E M B O Journal, 4(9), 2385-8.

Thomas, P. J., Murray, A. S., Granja, H. M. & Jain, M. (2008). Optical dating of Late Quaternary coastal deposits in northwestern Portugal. Journal of Coastal Research, 24, 134-144.

Thomsen, K. J., Murray, A. S., Jain, M. & Bøtter-Jensen, L. (2008). Laboratory fading rates of various luminescence signals from feldspar-rich sediment extracts. Radiation Measurements, 43, 144-148.

Thomsen, K. J., Jain, M., Murray, A. S., Denby, P. M., Roy, N. & Bøtter-Jensen, L. (2008). Minimizing feldspar OSL contamination in quartz UV-OSL using pulsed blue stimulation. Radiation Measurements, 43, 752-757.

Thomsen, K. J., Bøtter-Jensen, L., Jain, M., Denby, P. M. & Murray, A. S. (2008). Recent instrumental developments for trapped electron dosimetry. Radiation Measurements, 43, 414-421.

Odgaard, B. V. (2008). Does pollen type diversity reflect vegetation diversity. Poster session presented at International Palynological Congress, Bonn, Germany.

Odgaard, B. V. (2008). Species richenss of the past is elusive - evenness may not be. Terra Nostra, (2), 209.

Christensen, K. L., Lindsay, K. & Skrydstrup, T. (2006). Synthesis of Bisindole Compounds Using SmI₂. Poster session presented at Træf for Organisk Kemi Studerende, Lyngby, Denmark.

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Anne Kirstine Mehlsen