Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Malinowska, M., Nagy, I., Wagemaker, C. A. M., Ruud, A. K., Svane, S. F., Thorup-Kristensen, K., Jensen, C. S., Eriksen, B., Krusell, L., Jahoor, A., Jensen, J., Eriksen, L. B. & Asp, T. (2020). The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth. The Plant Genome, 13(3), e20049. Article e20049. https://doi.org/10.1002/tpg2.20049

Cunha, M. S., Avelino, P. P. & Chaplin, W. J. (2020). From solar-like to mira stars: A unifying description of stellar pulsators in the presence of stochastic noise. Monthly Notices of the Royal Astronomical Society, 499(4), 4687-4697. https://doi.org/10.1093/mnras/staa2932

Murphy, S. J., Gray, R. O., Corbally, C. J., Kuehn, C., Bedding, T. R. & Killam, J. (2020). The discovery of lambda Bootis stars - The Southern Survey II. Monthly Notices of the Royal Astronomical Society, 499(2), 2701-2713. https://doi.org/10.1093/mnras/staa2347

Møller, A. & Veileborg, O. H. (2020). Eliminating abstraction overhead of Java stream pipelines using ahead-of-time program optimization. Proceedings of the ACM on Programming Languages , 4(OOPSLA), Article 168. https://doi.org/10.1145/3428236

Nielsen, B. B., Torp, M. T. & Møller, A. (2020). Detecting Locations in JavaScript Programs Affected by Breaking Library Changes. Proceedings of the ACM on Programming Languages , 4(OOPSLA), Article 187. https://doi.org/10.1145/3428255

Nielsen, B. B. & Møller, A. (2020). Value Partitioning: A Lightweight Approach to Relational Static Analysis for JavaScript. In 34th European Conference on Object-Oriented Programming, ECOOP 2020 Article 16 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ECOOP.2020.16

Guzelturk, B., Winkler, T., Van de Goor, T., Smith, M. D., Bourelle, S. A., Feldmann, S., Trigo, M., Teitelbaum, S., Steinrueck, H.-G., de la Pena, G. A., Alonso-Mori, R., Zhu, D., Sato, T., Karunadasa, H. I., Toney, M. F., Deschler, F. & Lindenberg, A. (2021). Visualization of Dynamic Polaronic Strain Fields in Hybrid Lead Halide Perovskites. Nature Materials, 20(5), 618–623. https://doi.org/10.1038/s41563-020-00865-5

Seliger, B. J., McGill, B. J., Svenning, J. C. & Gill, J. L. (2021). Widespread underfilling of the potential ranges of North American trees. Journal of Biogeography, 48(2), 359-371. https://doi.org/10.1111/jbi.14001

Dalgaard, K., Lei, S., Wiedmann, S., Bremholm, M. & Schoop, L. (2020). Anomalous Shubnikov-de Haas quantum oscillations in rare-earth tritelluride NdTe₃. Physical Review B, 102(24), Article 245109. https://doi.org/10.1103/PhysRevB.102.245109

Bording, T., Kühl, A. K., Fiandaca, G., Christensen, J. F., Christiansen, A. V. & Auken, E. (2021). Cross-borehole geoelectrical time-lapse monitoring of in situ chemical oxidation and permeability estimation through induced polarization. Near Surface Geophysics, 19(1), 43-58. https://doi.org/10.1002/nsg.12131

Bunger, MH., Andersen, T., Sorensen, L., Oxlund, H., Lind, M., Eriksen, EF., Bunger, C. & Langdahl, B. (2002). The relationship between growth factor mRNA and protein levels in human bone. Journal of Bone and Mineral Research (JBMR), 17, S428-S428.

Bunger, MH., Andersen, T., Ling, M., Bunger, CE., Eriksen, EF. & Langdahl, B. (2002). Semiquantitative mRNA measurements of osteoinductive growth factors in human iliac-crest bone: Transcription factor LMP-1 in humans. Bone, 30(3), 2S-2S.

Grombacher, D., Liu, L., Osterman, G. K. & Larsen, J. J. (2021). Mitigating Narrowband Noise Sources Close to the Larmor Frequency in Surface NMR. IEEE Geoscience and Remote Sensing Letters, 18(8), 1376-1380. https://doi.org/10.1109/LGRS.2020.3000639

Okholm, T. L. H., Sathe, S., Park, S. S., Kamstrup, A. B., Rasmussen, A. M., Shankar, A., Chua, Z. M., Fristrup, N., Nielsen, M. M., Vang, S., Dyrskjøt, L., Aigner, S., Damgaard, C. K., Yeo, G. W. & Pedersen, J. S. (2020). Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression. Genome Medicine, 12(112), Article 112. https://doi.org/10.1186/s13073-020-00812-8

Griffiths, M. P., Grombacher, D. & Larsen, J. J. (2020). Parallelized Hybrid Bloch Solver for Surface Nuclear Magnetic Resonance. Abstract from Near Surface Geoscience 2020. https://doi.org/10.3997/2214-4609.202020063

Skorstengaard, L., Devriese, D. & Birkedal, L. (2019). Reasoning about a Machine with Local Capabilities: Provably Safe Stack and Return Pointer Management. ACM Transactions on Programming Languages and Systems, 42(1), Article 5. https://doi.org/10.1145/3363519

Griffiths, M. P., Grombacher, D. & Larsen, J. J. (2020). Efficient Bloch-equation solvers for surface nuclear magnetic Resonance. Abstract from AGU Fall Meeting 2020.

Asif, M. R., Bording, T. S., Barfod, A. S., Auken, E. & Larsen, J. J. (2020). Effect of Data Normalization on Neural Networks for the Forward Modelling of Transient Electromagnetic Data,. Abstract from Near Surface Geoscience 2020.

Frumin, D., Krebbers, R. & Birkedal, L. (2020). ReLoC Reloaded: A Mechanized Relational Logic for Fine-Grained Concurrency and Logical Atomicity. arxiv.org. https://arxiv.org/abs/2006.13635

Qian, Z., Kavvos, G. A. & Birkedal, L. (2020). Client-Server Sessions in Linear Logic. arxiv.org. https://arxiv.org/abs/2010.13926

Silva, G., Lyle, P. J. & Silva, C. (2020). Local Perspectives for Sharing Economy Design on a Remote Tourist Island. In Proceedings of the 32nd Australian Computer-Human Interaction Conference, OzCHI 2020 (pp. 368-378). Association for Computing Machinery. https://doi.org/10.1145/3441000.3441058

Sciannamblo, M., Teli, M., Lyle, P. J. & Csíkszentmihályi, C. (2020). Infrastructuring the commons today, when STS meets ICT. Journal of Peer Production, (14).

Rosenkilde Laursen, K., Bønløkke, J. H., Bendstrup, E., Bilde, M., Glasius, M., Gutzke, V. H., Puthukkadan Moosakutty, S., Olin, A.-C., Ravn, P., Østergaard, K. & Sigsgaard, T. (2020). A Randomised Controlled Trial of Acute Health Effects in Patients with Chronic Obstructive Pulmonary Disease After Passive Vape Exposure from e-cigarettes. EMJ Respiratory, 8(1), 65-66. Article AR1.

Kaarsted, T. & Nielsen, K. H. (2020). Citizen science i Danmark. Revy, 43(4), 17-20. https://doi.org/10.22439/revy.v43i4.6102

Işkın, U., Filiz, N., Yu, C., Machado, É. M. N., Öglü, B., Lauridsen, T. L., Davidson, T. A., Jørgensen, M. S., Tavsanoglu, U. N., Beklioglu, M. & Jeppesen, E. (2020). Impact of Nutrients, Temperatures, and a Heat Wave on Zooplankton Community Structure: An Experimental Approach. Water, 12(12), 1-19. Article 3416. https://doi.org/10.3390/w12123416, https://doi.org/10.3390/w12123416

Hermans, M., Risgaard-Petersen, N., Meysman, F. JR. & Slomp, C. P. (2020). Biogeochemical impact of cable bacteria on coastal Black Sea sediment. Biogeosciences, 17(23), 5919-5938. Article 5919. https://doi.org/10.5194/bg-17-5919-2020

Guo, Y., Nuermaimaiti, A., Kjeldsen, N. D., Gothelf, K. V. & Linderoth, T. R. (2020). Two-Dimensional Coordination Networks from Cyclic Dipeptides. Journal of the American Chemical Society, 142(47), 19814-19818. https://doi.org/10.1021/jacs.0c08700

Kurko, Á., Domokos, P., Vukics, A., Bækkegaard, T., Zinner, N. T., Fortágh, J. & Petrosyan, D. (2021). Optimal collection of radiation emitted by a trapped atomic ensemble. EPJ Quantum Technology, 8(1), Article 11. https://doi.org/10.1140/epjqt/s40507-021-00102-1

Holt-Danborg, L., Skovbjerg, S., Goderum, K. W., Nonboe, A. W., Stankevic, E., Frost, Á. K., Vitved, L., Jensen, J. K. & Vogel, L. K. (2020). Insights into the regulation of the matriptase-prostasin proteolytic system. Biochemical Journal, 477(22), 4349-4365. https://doi.org/10.1042/BCJ20200630

Skov, D. S., Andersen, J. L., Olsen, J., Jacobsen, B. H., Knudsen, M. F., Jansen, J. D., Larsen, N. K. & Egholm, D. L. (2020). Constraints from cosmogenic nuclides on the glaciation and erosion history of Dove Bugt, northeast Greenland. Geological Society of America Bulletin, 132(11-12), 2282-2294. https://doi.org/10.1130/b35410.1

Murphy, S. J., Paunzen, E., Bedding, T. R., Walczak, P. & Huber, D. (2020). The pulsation properties of λ bootis stars I. The southern TESS sample. Monthly Notices of the Royal Astronomical Society, 495(2), 1888-1912. https://doi.org/10.1093/mnras/staa1271

Fox, O. D., Fransson, C., Smith, N., Andrews, J., Azalee Bostroem, K., Brink, T. G., Bradley Cenko, S., Clayton, G. C., Filippenko, A. V., Fong, W. F., Gallagher, J. S., Kelly, P. L., Kilpatrick, C. D., Mauerhan, J. C., Miller, A. M., Montiel, E., Stritzinger, M. D., Szalai, T. & Van Dyk, S. D. (2020). The slow demise of the long-lived SN 2005ip. Monthly Notices of the Royal Astronomical Society, 498(1), 517-531. https://doi.org/10.1093/mnras/staa2324

Keles, E., Kitzmann, D., Mallonn, M., Alexoudi, X., Fossati, L., Pino, L., Seidel, J. V., Carroll, T. A., Steffen, M., Ilyin, I., Poppenhäger, K., Strassmeier, K. G., von Essen, C., Nascimbeni, V. & Turner, J. D. (2020). Probing the atmosphere of HD189733b with the Na I and K I lines. Monthly Notices of the Royal Astronomical Society, 498(1), 1023-1033. https://doi.org/10.1093/mnras/staa2435

Maxted, P. F. L., Gaulme, P., Graczyk, D., Hełminiak, K. G., Johnston, C., Orosz, J. A., Prša, A., Southworth, J., Torres, G., Davies, G. R., Ball, W. & Chaplin, W. J. (2020). The TESS light curve of AI Phoenicis. Monthly Notices of the Royal Astronomical Society, 498(1), 332-343. https://doi.org/10.1093/mnras/staa1662

Li, G., Guo, Z., Fuller, J., Bedding, T. R., Murphy, S. J., Colman, I. L. & Hey, D. R. (2020). The effect of tides on near-core rotation: analysis of 35 Kepler γDoradus stars in eclipsing and spectroscopic binaries. Monthly Notices of the Royal Astronomical Society, 497(4), 4363-4375. https://doi.org/10.1093/mnras/staa2266

Fridlund, M., Livingston, J., Gandolfi, D., Persson, C. M., Lam, K. W. F., Stassun, K. G., Hellier, C., Korth, J., Hatzes, A. P., Malavolta, L., Luque, R., Redfield, S., Guenther, E. W., Albrecht, S., Barragan, O., Benatti, S., Bouma, L., Cabrera, J., Cochran, W. D. ... Winn, J. N. (2020). The TOI-763 system: sub-Neptunes orbiting a Sun-like star. Monthly Notices of the Royal Astronomical Society, 498(3), 4503-4517. https://doi.org/10.1093/mnras/staa2502

Murphy, S. J., Saio, H., Takada-Hidai, M., Kurtz, D. W., Shibahashi, H., Takata, M. & Hey, D. R. (2020). On the first δSct-roAp hybrid pulsator and the stability of p and g modes in chemically peculiar A/F stars. Monthly Notices of the Royal Astronomical Society, 498(3), 4272-4286. https://doi.org/10.1093/mnras/staa2667

Choi, I., Beedholm, K., Dam, V. S., Bae, S.-H., Noble, D. J., Garraway, S. M., Aalkjær, C. & Boedtkjer, E. (2021). Sodium bicarbonate cotransporter NBCn1/Slc4a7 affects locomotor activity and hearing in mice. Behavioural Brain Research, 401, Article 113065. https://doi.org/10.1016/j.bbr.2020.113065

Fortin-Deschénes, M., Zschiesche, H., Menteş, T. O., Locatelli, A., Jacobberger, R. M., Genuzio, F., Lagos, M. J., Biswas, D., Jozwiak, C., Miwa, J. A., Ulstrup, S., Bostwick, A., Rotenberg, E., Arnold, M. S., Botton, G. A. & Moutanabbir, O. (2020). Pnictogens allotropy and phase transformation during van der waals growth. Nano Letters, 20(11), 8258–8266. https://doi.org/10.1021/acs.nanolett.0c03372

Thomsen, K. (2020). The factor type of dissipative KMS weights on graph C∗-algebras. Journal of Noncommutative Geometry, 14(3), 1107-1128. https://doi.org/10.4171/JNCG/388

Cai, H., Holleufer, A., Simonsen, B., Schneider, J., Lemoine, A., Gad, H. H., Huang, J., Huang, J., Chen, D., Peng, T., Marques, J. T., Hartmann, R., Martins, N. E. & Imler, J. L. (2020). 2'3'-cGAMP triggers a STING- and NF-κB-dependent broad antiviral response in Drosophila. Science Signaling, 13(660), Article eabc4537. https://doi.org/10.1126/scisignal.abc4537

Bian, L., Sanei, H., Niu, Z. & Yang, D. (2020). Geochemical characteristics and origin of petroleum in the southwest complicated fault subsag, Dongpu Depression of China's Bohai Bay Basin. Geological Journal, 55(12), 7858-7871. https://doi.org/10.1002/gj.3909

Williams, J. W., Ordonez, A. & Svenning, J.-C. (2021). A unifying framework for studying and managing climate-driven rates of ecological change. Nature Ecology & Evolution, 5(1), 17-26. https://doi.org/10.1038/s41559-020-01344-5

Tahamtani, F., Herskin, M. S., Foldager, L., Murrell, J., Sandercock, D. & Riber, A. B. (2021). Assessment of mobility and pain in broiler chickens with identifiable gait defects. Applied Animal Behaviour Science, 234, Article 105183. https://doi.org/10.1016/j.applanim.2020.105183

Curcio, D., Jones, A., Muzzio, R., Volckaert, K. C. R., Biswas, D., Sanders, C. E., Dudin, P., Cacho, C., Singh, S., Watanabe, K., Taniguchi, T., Miwa, J., Katoch, J., Ulstrup, S. & Hofmann, P. (2020). Accessing the Spectral Function in a Current-Carrying Device. Physical Review Letters, 125(23), Article 236403. https://doi.org/10.1103/PhysRevLett.125.236403

Alves, P. G. M. R., Nayara Ortiz, J. & Aranha, D. F. (2021). Faster Homomorphic Encryption over GPGPUs via hierarchical DGT. In N. Borisov & C. Diaz (Eds.), Financial Cryptography and Data Security - 25th International Conference, FC 2021, Revised Selected Papers (pp. 520-540). Springer. https://doi.org/10.1007/978-3-662-64331-0_27

Thyrring, J., Blicher, M. E., Krause-Jensen, D., Høgslund, S., Olesen, B., Wiktor Jr., J., Mouritsen, K. N., Peck, L. S., Wegeberg, S. & Sejr, M. K. (2020). Latitudinal patterns in intertidal ecosystem structure in West Greenland suggest resilience to climate change. Abstract from Arctic Change 2020.

Filiz, N., Işkın, U., Beklioglu, M., Öglü, B., Davidson, T. A., Jørgensen, M. S., Lauridsen, T. L. & Jeppesen, E. (2020). Phytoplankton Community Response to Nutrients, Temperatures, and a Heat Wave in Shallow Lakes: An Experimental Approach. Water, 12(12), Article 3394. https://doi.org/10.3390/w12123394