Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Bergenfeldt, C. & Mølmer, K. (2009). Cooling a micromechanical resonator to its ground state by measurement and feedback. Physical Review A, 80(4), 043838-. https://doi.org/10.1103/PhysRevA.80.043838

Søbjerg, L. S., Gauthier, D., Lindhardt, A. T., Bunge, M., Finster, K., Meyer, R. L. & Skrydstrup, T. (2009). Bio-supported palladium nanoparticles as a catalyst for Suzuki-Miyaura and Mizoroki-Heck reactions. Green Chemistry, 11, 2041-2046. https://doi.org/10.1039/b918351p

Wu, S. & Mølmer, K. (2009). Weak measurements with a qubit meter. Physics Letters A, 374(34-39). https://doi.org/10.1016/j.physleta.2009.10.026

Zajfman, D., Heber, O., Rappaport, M. L., Pedersen, H. B., Strasser, D. & Goldberg, S. (2003). Self-bunching effect in an ion trap resonator. Optical Society of America. Journal B: Optical Physics, (5), 1028-1032.

Pang, S. & Wu, S. (2009). Optimum unambiguous discrimination of linearly independent pure state. Physical Review A, 80(052320). https://doi.org/10.1103/PhysRevA.80.052320

Dimitrovski, D., Førre, M. & Madsen, L. B. (2009). Strong-field short-pulse nondipole dynamics. Physical Review A, 80(053412). https://doi.org/10.1103/PhysRevA.80.053412

Pedersen, H. B., Amarant, B., Heber, O., Rappaport, M. L. & Zajfman, D. (2002). Synchronization effect in an ion trap resonator. In F. Anderegg, L. Schweikhard & C. F. Driscoll (Eds.), AIP Conference Proceedings (Vol. 606, pp. 565-575). American Institute of Physics.

Strasser, D., Levin, J., Pedersen, H. B., Wolf, A., Schwalm, D. & Zajfman, D. (2003). A model for calculating branching ratios in H_{₃⁺ dissociative recombination}. In S. L. Guberman (Ed.), Dissociative Recombination of Molecular Ions With Electrons (pp. 235-242). Kluwer Academic Publishers.

Petersen, M. G., Ljungblad, S. & Håkansson, M. (2009). Designing for Playful Photography. New Review of Hypermedia and Multimedia, 15(2), 193-209.

Petersen, M. G. & Krogh, P. (2009). Design Articulations for Aesthetics of Interaction. In 4th Designing Pleasurable Products and Interfaces (DPPI) Association for Computing Machinery.

Petersen, M. G., Gude, R., Nielsen, K. R. & Grønbæk, K. (2009). MediaJourney: capturing and sharing digital media from real-world and virtual journeys. Poster session presented at ACM Conference on Hypertext and Hypermedia, HT, Torino, Italy. https://doi.org/10.1145/1557914.1557979

Petersen, M. G., Ludvigsen, M. & Krogh, P. (2009). Reconnecting Actions and Consequences. In First International Workshop on Expressive Interactions for Sustainability and Empowerment (EISE 2009): Session 4: Near-end Development for Empowerment BCS, The Chartered Institute for IT.

Pedersen, H. B., Strasser, D., Amarant, B., Heber, O., Rappaport, M. L. & Zajfman, D. (2003). Research with trapped keV ion beams. In Hyperfine Interactions (1-4 ed., Vol. 146, pp. 231-235). Kluwer Academic Publishers.

Wolf, A., Lammich, L., Strasser, D., Altevogt, S., Andrianarijaona, V., Buhr, H., Heber, O., Kreckel, H., Pedersen, H. B., Schwalm, D. & Zajfman, D. (2004). Storage ring experiments with cold molecular ions: the H₃⁺ Puzzle. Physica Scripta, T110, 193-199.

Pedersen, H. B., Buhr, H., Altevogt, S., Andrianarijaona, V., Kreckel, H., Lammich, L., de Ruette, N., Staicu-Casagrande, E. M., Schwalm, D., Strasser, D., Urbain, X., Zajfman, D. & Wolf, A. (2005). Storage ring studies on dissociative recombination and internal excitation of helium dimer ions. In A. Wolf, L. Lammich & P. Schmelcher (Eds.), Journal of Physics Conference Series: DR2004: Sixth International Conference on Dissociative Recombination: Theory, Experiments and Applications (Vol. 4, pp. 168-176). IOP Publishing.

Lammich, L., Strasser, D., Kreckel, H., Altevogt, S., Andrianarijaona, V., Buhr, H., Lange, M., Pedersen, H. B., Schwalm, D., Wolf, A. & Zajfman, D. (2005). DR rate coefficient measurements using stored beams of H3+ and its Isotopomers. In A. Wolf, L. Lammich & P. Schmelcher (Eds.), Journal of Physics Conference Series: DR2004: Sixth International Conference on Dissociative Recombination: Theory, Experiments and Applications (Vol. 4, pp. 98-103). IOP Publishing.

Frey, B. J., Weber, R. E., Aardt, W. J. V. & Fago, A. (1998). The haemoglobin system of the mudfish, Labeo capensis: adaptations to temperature and hypoxia. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 120(4), 735-742.

Fago, A., Wells, R. M. G. & Weber, R. E. (1997). Temperature-dependent enthalpy of oxygenation in Antarctic fish hemoglobins. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 118(2), 319-326.

Jespersen, S. N., Bjarkam, C. R., Nyengaard, J. R., Mallar, C., Hansen, B., Vosegaard, T., Østergaard, L., Yablonskiy, DA., Nielsen, N. C. & Vestergaard-Poulsen, P. (2010). Neurite density from magnetic resonance diffusion measurements at ultrahigh field: comparison with light microscopy and electron microscopy. NeuroImage, 49(1), 205-16. https://doi.org/10.1016/j.neuroimage.2009.08.053

Afshani, P., Arge, L. A. & Larsen, K. D. (2009). Orthogonal Range Reporting in Three and Higher Dimensions. Symposium on Foundations of Computer Science. Annual Proceedings, 149-158. https://doi.org/10.1109/FOCS.2009.58

Arge, L. A. & Revsbæk, M. (2009). I/O-Efficient Contour Tree Simplification. Lecture Notes in Computer Science. https://doi.org/10.1007/978-3-642-10631-6_116

Arge, L. A. (2009). Recent Advances in Worst-Case Efficient Range Search Indexing (Invited Paper). Lecture Notes in Computer Science, 3-4. https://doi.org/10.1007/978-3-642-02982-0_2

Arge, L. A. (2009). Worst-Case Efficient Range Searching: Invited Tutorial 2. In J. Paredaens & J. Su (Eds.), 28th Symposium on Principles of Database Systems: Proceedings (pp. 175-176). Association for Computing Machinery. https://doi.org/10.1145/1559795.1559822

Bertelsen, O. W. & Hedvall, P.-O. (2009). New Challenges for Participation in Participatory Design in Family, Clinical and Other Asymmetrical, Non-work Settings. Lecture Notes in Computer Science, 971-972. https://doi.org/10.1007/978-3-642-03658-3_136

Bønding, S. H., Cossins, A. P., Berenbrink, M., Williams, D. R. & Fago, A. (2009). Investigations of myoglobin function in the common carp (Cyprinus carpio). Abstract from International Congress of Respiratory Science - Abstracts & Scientific Program, Bad Honnef, Germany.

Gesser, H. & Overgaard, J. (2009). Comparative aspects of hypoxia tolerance of the ectothermic vertebrate heart. In M. L. Glass & S. C. Wood (Eds.), Cardio-respiratory control in vertebrates - Comparative and evolutionary aspects (pp. 263-284). Springer. https://doi.org/10.1007/978-3-540-93985-6

Taylor, E. W. & Wang, T. (2009). Control of the heart and of cardiorespiratory interactions in ectothermic vertebrates. In M. L. Glass & S. C. Wood (Eds.), Cardio-respiratory control in vertebrates - Comparative and evolutionary aspects (pp. 285-315). Springer. https://doi.org/10.1007/978-3-540-93985-6

Robador, A., Brüchert, V. & Jørgensen, B. B. (2009). The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environmental Microbiology, 11(7), 1692-1703. https://doi.org/10.1111/j.1462-2920.2009.01896.x

Teske, A., Jørgensen, B. B. & Gallardo, V. A. (2009). Filamentous bacteria inhabiting the sheaths of marine Thioploca spp. on the Chilean continental shelf. F E M S Microbiology Ecology, 68, 164-172. https://doi.org/10.1111/j.1574-6941.2009.00659.x

Eden, S., Barc, B., Mason, N. J., Hoffmann, S. V., Nunes, Y. & Limão-Vieira, P. (2009). Electronic state spectroscopy of C₂Cl₄. Chemical Physics, 365, 150-157. https://doi.org/10.1016/j.chemphys.2009.10.010

Nielsen, L. M., Holm, A. I. S., Varsano, D., Kadhane, U., Hoffmann, S. V., Di Felice, R., Rubio, A. & Nielsen, S. B. (2009). Fingerprints of Bonding Motifs in DNA Duplexes of Adenine and Thymine Revealed from Circular Dichroism: Synchrotron Radiation Experiments and TDDFT Calculations. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 113, 9614-9619. https://doi.org/10.1021/jp9032029

Lizzit, S., Baraldi, A., Grütter, C., Bilgram, J. H. & Hofmann, P. (2009). The surface phase transition and low-temperature phase of a-Ga(010) studiedby SPA-LEED. Surface Science, 603, 3222-3226. https://doi.org/10.1016/j.susc.2009.09.006

Canning, J., Kristensen, M., Skivesen, N., Martelli, C., Têtu, A. & Hagedorn Frandsen, L. (2009). Spectrally narrow polarisation conversion in a slow-light photonic crystal waveguide. Journal of the European Optical Society - Rapid Publications, 4.

Britz, D., Baronas, R., Gaidamauskaite, E. & Ivanauskas, F. (2009). Further comparisons of finite difference schemes for computational modelling of biosensors. Nonlinear Analysis, 14(4), 419-433.

Røy, H., Vopel, K., Huettel, M. & Jørgensen, B. B. (2009). Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum. Marine Biology, 156, 669-677. https://doi.org/10.1007/s00227-008-1117-6

Hoehler, T. M. & Jørgensen, B. B. (2009). Energy emerges. Environmental Microbiology, 1, 9-10. https://doi.org/10.1111/j.1758-2229.2008.00010.x

Wassmann, P., Jørgensen, B. B., Reigstad, M. & Slagstad, D. (2009). Sedimentation and degradation of biogenic matter. In E. Sakshaug, G. Johnsen & K. Kovacs (Eds.), Ecosystem Barents Sea (pp. 323-338). TAPIR Akademisk Forlag.

Mayntz, D., Toft, S. & Vollrath, F. (2009). Nutrient balance affects foraging behaviour of a trap-building predator. Biology Letters, 5, 735-738. https://doi.org/10.1098/rsbl.2009.0431

Nevo, I., Holmegaard, L., Nielsen, J. H., Hansen, J. L., Stapelfeldt, H., Filsinger, F., Meijer, G. & Küpper, J. (2009). Laser-induced 3D alignment and orientation of quantum state-selected molecules. Physical Chemistry Chemical Physics, 11(42), 9912-9918. https://doi.org/10.1039/b910423b

Zhan, B., Andersen, P. K., Hedegaard, J., Bendixen, C. & Panitz, F. (2009). Comparison of assembly strategies for high throughput de novo sequencing of bacterial genomes: Poster U45. Poster session presented at ISMB/ECCB 2009 - Seventeenth Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) / Eighth Annual European Conference on Computational Biology (ECCB), Stockholm, Sweden.

Hornshøj, H., Panitz, F., Hedegaard, J., Conley, L. N., Nielsen, R. O. & Bendixen, C. (2009). Prediction of splice junctions and exon-skipping events in porcine tissues from alignments of next-generation RNA short reads to the genome sequence: Poster no. 27. Poster session presented at Pig Genome III Conference, Hinxton, Cambridge, United Kingdom.

Thomsen, B., Hansen, J. H., Hedegaard, J., Nielsen, R. O., Panitz, F. & Bendixen, C. (2009). MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing: Poster no 45. Poster session presented at Pig Genome III Conference, Hinxton, Cambrige, United Kingdom.

Zhan, B., Hedegaard, J., Fadista, J., Panitz, F. & Bendixen, C. (2009). Global single nucleotide polymorphism discovery by whole genome sequencing a single: Poster no 47. Poster session presented at Pig Genome III Conference, Hinxton, Cambridge, United Kingdom.

Fadista, J. (2009). Copy number variation in the cattle polled locus. Poster session presented at SAFE Science Day, Foulum, Denmark.

Filsinger, F., Küpper, J., Meijer, G., Hansen, J. L., Maurer, J., Nielsen, J. H., Holmegaard, L. & Stapelfeldt, H. (2009). Pure Samples of Individual Conformers: The Separation of Stereoisomers of Complex Molecules Using Electric Fields. Angewandte Chemie International Edition, 48(37), 6900-6902. https://doi.org/10.1002/anie.200902650

Filsinger, F., Küpper, J., Meijer, G., Holmegaard, L., Nielsen, J. H., Nevo, I., Hansen, J. L. & Stapelfeldt, H. (2009). Quantum-state selection, alignment, and orientation of large molecules using static electric and laser fields. Journal of Chemical Physics, 131(6), 064309. https://doi.org/10.1063/1.3194287

Holmegaard, L., Nielsen, J. H., Nevo, I., Stapelfeldt, H., Filsinger, F., Küpper, J. & Meijer, G. (2009). Laser-Induced Alignment and Orientation of Quantum-State-Selected Large Molecules. Physical Review Letters, 102(2), 023001. https://doi.org/10.1103/PhysRevLett.102.023001

Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2009). Site Preferences of Fluoride Guest Ions in the Calcium Silicate Phases of Portland Cement from ²⁹Si{¹⁹F} CP-REDOR NMR Spectroscopy. Journal of the American Chemical Society, 131(40), 14170-14171. https://doi.org/10.1021/ja905223d

Viftrup, S. S., Kumarappan, V., Holmegaard, L., Bisgaard, C., Stapelfeldt, H., Artamonov, M., Hamilton, E. & Seideman, T. (2009). Controlling the rotation of asymmetric top molecules by the combination of a long and a short laser pulse. Physical Review A, 79(2), 023404. https://doi.org/10.1103/PhysRevA.79.023404