Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kobbelgaard, S., Bella, M. & Jørgensen, K. A. (2006). Improved Asymmetric S_NAr Reaction of β-Dicarbonyl Compounds Catalyzed by Quaternary Ammonium Salts Derived from Cinchona Alkaloids. J. Org. Chem., 71, 4890.

Bell, M., Frisch, K. & Jørgensen, K. A. (2006). Organocatalytic Asymmetric Deconjugative Michael Additions. J. Org. Chem., 71, 5407.

Derezinski, J. & Skibsted, E. (2006). Classical scattering at low energies. http://www.imf.au.dk/publs?id=599

Risager, M. S. (2006). On pairs of prime geodesics with fixed homology difference. http://www.imf.au.dk/publs?id=603

Bökstedt, M. & Ottosen, I. (2006). String cohomology groups of complex projective spaces. http://www.imf.au.dk/publs?id=605

Bojsen, A., Buesa, J., Montava, R., Kvistgaard, A. S., Kongsbak, M. B., Petersen, T. E., Heegaard, C. W. & Rasmussen, J. T. (2007). Inhibitory Activities of Bovine Macromolecular Whey Proteins on Rotavirus Infections In Vitro and In Vivo. Journal of Dairy Science, 90, 66-74.

Branson, T. P. & Ørsted, B. (2006). Spontaneous generation of eigenvalues. http://www.imf.au.dk/publs?id=608

Kock, A. (2006). Connections and path connections in groupoids. http://www.imf.au.dk/publs?id=619

Shi, J., Shi, Y., Wæhrens, L. N., Rasmussen, J. T., Heegaard, C. W. & Gilbert, G. E. (2006). Lactadherin Detects Early Phosphatidylserine Exposure on Immortalized Leukemia Cells Undergoing Programmed Cell Death. Cytometry A, 69(12), 1193-1201.

Andersen, H. H. & Kulkarni, U. (2006). Sum formulas for reductive algebraic groups. http://www.imf.au.dk/publs?id=630

Wæhrens, L. N., Faldborg, L., Shi, J., Shi, Y., Petersen, T. E., Gilbert, G. E., Heegaard, C. W. & Rasmussen, J. T. (2006). Detection of Cellular PS-exposure by Lactadherin. Poster session presented at 3rd International Symposium, Milk Genomics & Human Health, Brüssels, Belgium.

Stetkær, H. (2006). Representations, convolution square roots and spherical vectors. http://www.imf.au.dk/publs?id=632

Shi, J. L., Pipe, S. W., Rasmussen, J. T., Heegaard, C. W. & Gilbert, G. E. (2006). Regulated phosphatidylserine exposure on platelets mediates fibrin formation in hemostasis and thrombosis. In BLOOD (Vol. 106, pp. 470A-470A). AMER SOC HEMATOLOGY, 1900 M STREET. NW SUITE 200, WASHINGTON, DC 20036 USA.

Jørgensen, J. B., Christensen, S., Tuovinen, A.-P. & Xu, J. (2006). Tool Support for Estimating the Memory Usage of Mobile Phone Software. Software Tools for Technology Transfer.

Jørgensen, J. B. & Lassen, K. B. (2006). Requirements Engineering for the Adviser Portal Bank System. International Conference on Engineering Computer Based Systems.

Jørgensen, J. B. (2006). Addressing Problem Frame Concerns Using Coloured Petri Nets and Graphical Animation. International Workshop on Advances and Applications of Problem Frames.

Jørgensen, J. B., Lassen, K. B. & van der Aalst, W. (2006). From Task Descriptions via Coloured Petri Nets Towards an Implementation of a New Electronic Patient Record. International Workshop on Coloured Petri Nets.

Klose, A. (2006). Analysis of Some Greedy Algorithms for the Single-Sink Fixed-Charge Transportation Problem. http://www.imf.au.dk/publs?id=633

Osite, A., Viksna, A., Katkevich, J., Balcerbule, Z., Laursen, J. & Pind, N. (2005). Reference experiments for the characterization of car exhaust air pollution. Poster session presented at International Conference on Environmental Pollution, Eco-Balt 2005, Riga, Latvia.

Devold, T. G., Rykke, M., Isabey, D., Sørensen, E. S., Christensen, B., Langsrud, T., Svenning, C., Borch-Ionsen, B., Karlsen, J. & Vegarud, G. E. (2006). In vitro studies of adsorption of milk protein onto tooth enamel. Int. Dairy Journal, 16, 1013-1017.

Juhler, S., Saunders, A. M., Pedersen, K., Revsbech, N. P., Schramm, A. & Nielsen, L. P. (2006). Stratification of Microbial Processes and Populations in Biofilms Treating Pig Farm Waste Air. In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11). Vienna, Austria (pp. 67). International Society for Microbial Ecology.

Zhang, B., Gröhn, F., Pedersen, J. S., Fischer, K. & Schmidt, M. (2006). Conformation of Cylindrical Brushes in Solution: Effect of Side Chain Length. Macromolecules, 39, 8440-8450.

Yusof, A. M., Jaenicke, E., Pedersen, J. S., Noegel, A. A., Schleicher, M. & Hofmann, A. (2006). Mechanism of Oligomerisation of Cyclase-associated Protein from Dictyostelium discoideum in Solution. J. Mol. Biol., 362, 1072-1081.

Nørregaard, R., Jensen, BL., Topcu, S., Aamann, M. A. D., Schweer, H., Knepper, M. A., Nielsen, S. & Frøkiær, J. (2007). COX-2 activity transiently contributes to increased water and NaCl excretion in the polyuric phase after release of ureteral obstruction. American Journal of Physiology: Renal Physiology, 292(5), 1322-1333.

Qu, D., Pedersen, J. S., Garnier, S., Laschewsky, A., Möhwald, H. & Klitzing, R. V. (2006). Effect of Polymer Charge and Geometrical Confinement on Ion Distribution and the Structuring in Semidilute Polyelectrolyte Solutions: Comparison between AFM and SAXS. Macromolecules, 39, 7364-7371.

Keiding, K., Sørensen, M. S. & Pind, N. (1987). A receptor model for urban aerosols based on oblique factor analysis. Analytica Chimica Acta, 193, 295-307.

Bang, J., Jain, S., Li, Z., Lodge, T. P., Pedersen, J. S., Kesselman, E. & Talmon, Y. (2006). Sphere, Cylinder, and Vesicle Nanoaggregates in Poly(styrene-b-isoprene) Diblock Copolymer Solutions. Macromolecules, 39, 1199-1208.

Jensen, K. & Podelski, A. (Eds.) (2006). Special Section on "Tools and Algorithms for the Construction and Analysis of Systems". International Journal on Software Tools for Technology Transfer, 8(3), 177-299. https://doi.org/10.1007/s10009-006-0221-5

Cheptea, D. & Le, T. (2007). A TQFT associated to the LMO invariant of three-dimensional manifolds. Communications in Mathematical Physics, 272(3), 601-634. https://doi.org/10.1007/s00220-007-0241-3

Anna, A., Radutoiu, E. S., Jensen, E. Ø. & Stougaard, J. (2006). Analysis of legume-rhizobia interactions using different gfp-expressing rhizobia strains. Poster session presented at 7th European Nitrogen Fixation Conference, Aarhus, Denmark.

Balogh, J., Olsson, U. & Pedersen, J. S. (2006). Dependence on Oil Chain Length of the Curvature Elastic Properties of Nonionic Surfactant Films: Emulsification Failure and Phase Equilibria. J. Dispersion Science and Technology, 27, 497-510.

Berndt, I., Pedersen, J. S. & Richtering, W. (2006). Temperature-Sensitive Core-Shell Microgel Particles with Dense Shell. Angewandte Chemie International Edition, 45, 1737-1741.

Berndt, I., Pedersen, J. S., Lindner, P. & Richtering, W. (2006). Influence of Shell Thickness and Cross-Link Density on the Structure of Temperature-Sensitive Poly-N-Isopropylacrylamide-Poly-N-Isopropylmethacrylamide Core-Shell Microgels Investigated by Small-Angle Neutron Scattering. Langmuir, 22, 459-468.

Vass, S., Pedersen, J. S., Klapper, M. & Rétfalvi, E. (2006). On the conformation of the hydrophilic (B) chains in ABA and BAB type triblock copolymers. Physica B, 385-386, 759-761.

Devold, T. G., Rykke, M., Sørensen, E. S., Christensen, B., Karlsen, J. & Vegarud, G. E. (2006). In vitro studies of adsorption of milk proteins onto tooth enamel. Dental Tribune - Asia Pacific Edition, 4(12), 8-9.

Christensen, N. E., Kudrnovský, J. & Rodriguez, C. O. (2007). Metamagnetic behavior in Fe₃Si and Fe₃Al. Inr. J. Mater. Sci. Simu., 1, 1-15.

Schack, L., Bertelsen, H., Kelsen, J., Agnholt, J. & Sørensen, E. S. (2006). Osteopontin in milk - implications in neonate immunity. Poster session presented at IDF World Dairy Congress Shanghai 2006, Shanghai, China.

Sørensen, E. S. (2005). Use of osteopontin in dental formulations. (Patent No. WO 2005/053628 A1).

Hansen, K. A. (2006). On Modular Counting with Polynomials. In 21st Annual IEEE Conference on Computational Complexity (CCC'06) (pp. 202-212). IEEE Computer Society Press. https://doi.org/10.1109/CCC.2006.29

Hansen, K. A. (2006). Lower Bounds for Circuits with Few Modular Gates using Exponential Sums. Electronic Colloquium on Computational Complexity, 13(79). http://eccc.hpi-web.de/eccc-reports/2006/TR06-079/index.html

Hansen, K. A., Miltersen, P. B. & Vinay, V. (2006). Circuits on Cylinders. Computational Complexity, 15(1), 62-81. https://doi.org/10.1007/s00037-006-0207-4

Selin Lindgren, E., Henriksson, D., Lundin, M., Therning, P., Laursen, J. & Pind, N. (2005). Possible indicators for bio-mass burning in a small swedish city as studied by EDXRF techniques. Poster session presented at International Conference on Environmental Pollution, Eco-Balt 2005, Riga, Latvia.

Têtu, A., Kristensen, M., Frandsen, L. H., Harpøth, A., Borel, P., Jensen, J. S. & Sigmund, O. (2005). Broadband topology-optimized photonic crystal components for both TE and TM polarizations. Optics Express, 13, 8606-8611. https://doi.org/10.1364/OPEX.13.008606

Lavrinenko, A. V., Têtu, A., Frandsen, L. H., Fage-Pedersen, J. & Borel, P. I. (2007). Optimization of photonic crystal 60^o waveguide bends for broadband and slow-light transmission. Applied Physics B: Lasers and Optics, 87(1), 53-56. https://doi.org/10.1007/s00340-006-2507-4

Petridis, Y. N. & Risager, M. S. (2008). Equidistribution of geodesics on homology classes and analogues for free groups. Forum Mathematicum, 20(5), 783-815. https://doi.org/10.1515/FORUM.2008.038

Goertz, S. & Klose, A. (2007). The single-sink fixed-charge transportation problem: Applications and solution methods. In Management logistischer Netzwerke: Entscheidungsunterstützung, Informationssysteme und OR-Tools (pp. 383-406). Physica-Verlag.

Têtu, A., Yang, L., Lavrinenko, A. V., Frandsen, L. H. & Borel, P. I. (2006). Enhancement of slow light coupling in photonic crystal waveguides using topology optimization. Paper presented at Conference on Lasers and Electro-Optics (CLEO), Long Beach, United States.

Klose, A. & Görtz, S. (2007). A branch-and-price algorithm for the capacitated facility location problem. European Journal of Operational Research, 179(3), 1109-1125. https://doi.org/10.1016/j.ejor.2005.03.078

Deen, R. & Pedersen, J. S. (2006). Late-stage coarsening of oil droplets of excess oil in microemulsions following a temperature quench. International Journal of Materials Research, 97(3), 285-289.

Klose, A. (2006). Algorithms for solving the single-sink fixed-charge transportation problem. Computers & Operations Research, 35(6), 2079-2092. https://doi.org/10.1016/j.cor.2006.10.011

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Skals, M. G., Skovgaard, N., Abe, A. S. & Wang, T. (2005). Venous tone and cardiac function in the South American rattlesnake Crotalus durissus: mean circulatory filling pressure during adrenergic stimulation in anaesthetised and fully recovered animals. Journal of Experimental Biology, 208(Pt 19), 3747-59. https://doi.org/10.1242/jeb.01828

Weber, R. E., Fago, A. & Low, P. S. (2005). Vertebrate hemoglobins - possible roles in mediating oxygenation dependence of red cell metabolism and rheology. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 141, S187.

Arias, C. A. & Brix, H. (2005). Wastewater treatment in filter beds. Results from the pilot plant DK1 at Mørke, Denmark. http://www.filtralite.com/arch/_img/187475.pdf: . http://www.filtralite.com/arch/_img/187475.pdf

Arias, C. A. & Brix, H. (2005). Wastewater treatment in filter beds. Results from the pilot plant DK2 at Friland, Denmark. http://www.filtralite.com/arch/_img/187473.pdf. http://www.filtralite.com/arc/_img/187473.pdf

Vopel, K., Thistle, D., Ott, J., Bright, M. & Røy, H. (2005). Wave-induced H2S flux sustains a chemoautotrophic symbiosis. Limnology and Oceanography, 50(1), 128-133.

Weber, R. E. & Voelter, W. (2004). 'Novel' factors that regulate oxygen binding in vertebrate hemoglobins. Micron, 35, 45-46.

Nielsen, I. (Ed.) (2004). Åbent mod verden; Aarhus Universitet, Schiøler, E.

Andersen, J. B., Gesser, H. & Wang, T. (2004). Acidosis counteracts the negative inotropic effect of K⁺ on ventricular muscle strips from the toad Bufo marinus. Physiological and Biochemical Zoology, 77(2), 223-231.

Andersen, J. B., Gesser, H. & Wang, T. (2004). Acidosis counteracts the negative inotropic effects of K⁺ on ventricular muscle strips from the toad Bufo marinus. (pp. 64-64).

Kallmeyer, J., Ferdelman, TG., Weber, A., Fossing, H. & Jørgensen, BB. (2004). A cold chromium distillation procedure for radiolabeled sulfide applied to sulfate reduction measurements. Limnology and Oceanography: Methods, 2, 171-180.

Fago, A., Hundahl, C., Dewilde, S., Gilany, K., Moens, L. & Weber, R. E. (2004). Allosteric regulation and temperature dependence of oxygen binding in human neuroglobin and cytoglobin. Journal of Biological Chemistry, 279(43), 44417-44426.

Toft, G., Baatrup, E. & Guillette Jr., L. J. (2004). Altered social behavior and sexual characteristics in mosquitofish (Gambusia holbrooki) living downstream of a paper mill. Aquatic Toxicology, 70, 213-222.

Risgaard-Petersen, N., Meyer, R. L., Schmid, M., Jetten, M. S. M., Enrich-Prast, A., Rysgaard, S. & Revsbech, N. P. (2004). Anaerobic ammonium oxidation in an estuarine sediment. Aquatic Microbial Ecology, 36, 293-304.

Jørgensen, BB., Bottcher, ME., Luschen, H., Neretin, LN. & Volkov, II. (2004). Anaerobic methane oxidation and a deep H2S sink generate isotopically heavy sulfides in Black Sea sediments. Geochimica et Cosmochimica Acta, 68(9), 2095-2118.

Pastor, R., Arias, C. A., Guillen, G., Fernandez, M., García, J. (Ed.), Morató, J. (Ed.) & Bayona, J. M. (Ed.) (2004). Análisis economico de sistemas naturales para el tratamiento de efluentes industriales. (pp. 93-100).

Nielsen, I. (2004). A new inland species of Canavalia (Leguminosae, Papilionoideae) from New Caledonia. Adansonia, 26(2), 149-151.

Larsen, K. & Jenjittikul, T. (2004). A new species of Caulokaempferia (Zingiberaceae) from Laos. Edinburgh Journal of Botany, 60(3), 509-512.

Suksathan, P. & Triboun, P. (2004). A new species of Caulokaempferia (Zingiberaceae) from Thailand. Edinburgh J. Bot, 60(3), 513-516.

Lund-Hansen, L. C., Larsen, E., Jensen, K. T., Mouritsen, K. N., Christiansen, C., Andersen, T. J. & Vølund, G. (2004). A new video and digital camera system for studies of the dynamics of microtopographic features on tidal flats. Marine Georesources and Geotechnology, 22, 115-122.

Lund-Hansen, L. C. & Vang, T. (2004). An inflow and intrusion event in the Little Belt at the North Sea-Baltic Sea transition and a related sub-surface bloom of Pseudo-nitzschia pseudodelicatissima. Estuarine, Coastal and Shelf Science, 59, 265-276.

Gustafsson, M., Smith, N. (Ed.), Mori, S. A. (Ed.), Henderson, A. (Ed.), Stevenson, D. W. (Ed.) & Heald, S. V. (Ed.) (2004). Anisophylleaceae. In Flowering plants of the Neotropics (pp. 16-17)

Offenberg, J. (2004). Ant-herbivore-plant interactions in a mangrove: mechanisms behind direct and indirect effects.

Dransfield, J., Barfod, A. & Pongsattayapipat, R. (2004). A preliminary checklist to Thai palms. Thai Forest Bulletin (BOT.), 32, 32-72.

Riis, T. (2004). Aquatic Botany.

Banka, R. & Barfod, A. (2004). A spectacular new species of Licuala (Arecaceae, Coryphoideae) from New Guinea. Kew Bulletin, 59, 73-75.

Lund-Hansen, L. C., Tengberg, A. & Hall, P. (2004). A time-scale of hours for increased shear stress and erosion rate, induced by a change from anoxic to oxic conditions in the water - The INTAS project in the Gulf of Finland. Poster session presented at BioFlow Workshop, Isola de San Servolo,Venice, Italy.

Nielsen, I. (2004). A university for the world: Research for development, Schiøler, E.

Nielsen, M., Larsen, L. H., Jetten, M. S. M. & Revsbech, N. P. (2004). Bacterium-based NO₂- biosensor for environmental applications. Applied and Environmental Microbiology, 70(11), 6551-6558.

Neubauer, A. T. A., Pedersen, A.-GU., Finster, K., Herbert, R. A., Donelly, A. P., Viaroli, P., Giordani, G., de Wit, R. & Lomstein, B. A. (2004). Benthic decomposition of Zostera marina roots: a controlled laboratory experiment. Journal of Experimental Marine Biology and Ecology, 313, 105-124.

Neubauer, A. T. A., Pedersen, A. G. U., Finster, K., Herbert, R. A., Donnelly, A. P., Viaroli, P., Giordani, G., De Wit, R. & Lomstein, B. A. (2004). Benthic decomposition of Zostera marina roots: A controlled laboratory experiment. Journal of Experimental Marine Biology and Ecology, 313(1), 105-124. https://doi.org/10.1016/j.jembe.2004.08.003

Valido, A., Dupont, Y. & Olesen, J. M. (2004). Bird-flower interactions in the Macaronesian Islands. Journal of Biogeography, 31, 1945-1953.

Petersen, J. H. & Knudsen, H. J. (2004). Bonniers svampebog.

Richardson, K. (2004). Can we document global environment changes?. Paper presented at The Global Conscience Conference, Copenhagen, 23-24 May.

Hale, M. L., Gustafsson, M., Borland, A. M. & Wolff, K. (2004). Causes of size homoplasy among chloroplast microsatellites in closely related Clusia species. Journal of Molecular Evolution, 58, 182-190.

Abildgaard, L., Ramsing, N. B. & Finster, K. (2004). Characterization of the marine propionate-degrading, sulfate-reducing bacterium Desulfofaba fastidiosa sp. nov. and reclassification of Desulformusa hansenii as Desulfofaba hansenii comb.nov. Int. J. Syst. Evol. Microbiol., 54, 393-399.

Riisgård, H. U., Nielsen, K. K., Fuchs, J., Rasmussen, B. F., Obst, M. & Funch, P. (2004). Ciliary feeding structures and particle capture mechanism in the freshwater bryozoan Plumatella repens (Phylactolaemata). Invertebrate Biology, 123(2), 156-167.

Gustafsson, M., Nee, M., Smith, N. (Ed.), Mori, S. A. (Ed.), Henderson, A. (Ed.), Stevenson, D. W. (Ed.) & Heald, S. V. (Ed.) (2004). Clusiaceae. In Flowering plants of the Neotropics (pp. 105-107)

Riis, T., Biggs, B. J. F. & Flanagan, M. (2004). Colonisation and temporal dynamics of macrophytes in artificial stream channels with contrasting flow regimes. Archiv für Hydrobiologie, 159(1), 77-95.

Heath, M. R., Boyle, P. R., Gislason, A., Gurney, W. S. C., Hay, S. J., Head, E. J. H., Holmes, S., Ingvarsdottir, A., Jonasdottir, S. H., Lindeque, P., Pollard, R. T., Rasmussen, J., Richards, K., Richardson, K., Smerdon, G. & Speirs, D. (2004). Comparative ecology of over-wintering Calanus finmarchicus in the northern North Atlantic, and implications for life-cycle patterns. I C E S Journal of Marine Science, 61, 698-708.

Wahlberg, M. (2004). Comparing a linear with a non-linear method for acoustic localization. Canadian Acoustics, 32(2), 125-131.

Hansen, D. L., Brix, H. & Arias, C. A. (2004). Comparison of faecal coliform removal in different types of constructed wetland systems and other low technology systems. Paper presented at Avignon, France, 26-30 September 2004.

Pellissier, V., Gallet, S., Roze, F. & Pellissier, V. (2004). Comparison of the vegetation and seed bank on hedge banks of different ages in Brittany, France. Environmental Management, 34(1), 52-61. https://doi.org/10.1007/s00267-004-0041-x

Risgaard-Petersen, N., Nicolaisen, M. H., Revsbech, N. P. & Lomstein, B. A. (2004). Competition between ammonia-oxidizing bacteria and benthic microalgae. Applied and Environmental Microbiology, 70(9), 5528-5537.

Boriss, H., Loeschcke, V., Niekerk, V. K. K. (Ed.) & Buhl, H. (Ed.) (2004). Complexity theory provides metaphors for a better understanding of biological processes: A holistic approach to explaining the stress response. In The significance of complexity: Approaching a complex world through science, theology and the humanities (pp. 75-91)