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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Vaitheeswaran, G., Kanchana, V., Kumar, R. S., Cornelius, A. L., Nicol, M. F., Svane, A., Delin, A. & Johansson, B. (2007). High-pressure structural, elastic, and electronic properties of the scintillator host material KMgF₃. Physical Review B, 76(014107).

Knudsen, N. T., Yde, J. C. & Gasser, G. (2007). Suspended sediment transport in glacial meltwater during the initial quiscent phase after a major surge event at Kuannersuit Glacier, Greenland. Geografisk Tidsskrift - Danish Journal of Geography, 107/1, 1-7.

Højsgaard, S. (2008). Packages for gRaphical modelling in R. Abstract from useR! conference at Iowa State University, Aimes, Iowa, United States.

Kristensen, K. & Ericson, L. (2007). Will growth characteristics describe yield differently in different environments? In H. Østergård, G. Backes & G. Kovács (Eds.), Proceedings of the COST SUSVAR workshop on Varietal characteristics of cereals in different growing systems with special emphasis on below ground traits (pp. 45-48) http://www.cost860.dk/publications/doc/ProcSUSVAR2007Velence.pdf

Kjøglum, S., Henryon, M., Aasmundstad, T. & Korsgaard, I. (2008). Selective breeding can increase resistance of Atlantic salmon to furunculosis, infectious salmon anaemia and infectious pancreatic necrosis. Aquaculture Research, 39(5), 498-505. https://doi.org/10.1111/j.1365-2109.2008.01904.x

Mark, T. & Lassen, J. (2007). Genotype by housing interaction in Danish Holstein. Abstract from Interbull Meeting, Dublin, Ireland.

Højsgaard, S. & Lauritzen, S. L. (2007). Inference in Graphical Gaussian Models with Edge and Vertex Symmetries with the gRc Package for R. Journal of Statistical Software, 23(6).

Nielsen, K. H. (2008). Modus 2-museet. MID Nyhedsbrev, (17), 6-9.

Serritzlew, C. & Nielsen, K. H. (2008). Museum, Natur, Kultur: Anmeldelse af Mark Dion: Museets Naturalhistoria, Dunkers Kulturhus, Helsingborg. MID Nyhedsbrev, (17), 27-29.

Dalin, P., Connors, M., Schofield, I., Shelton, I., Zalcik, M., Pertsev, N., Sukhodoev, V., Perminov, V., McEwan, T., McEachran, I., Frandsen, S., Hansen, O., Andersen, H., Zadorozhny, A. & Romejko, V. (2008). Studies of noctilucent clouds with an inter-continental network of automatic digital cameras. Paper presented at American Geophysical Union, Fall Meeting 2007, San Francisco, United States.

Hansen, E. M., Thomsen, I. K., Pedersen, A. R. & Hansen, P. K. (2008). Vælg dyrkningsmetoder, som gavner kvælstofforsyningen. In Sammendrag af indlæg: Plantekongres 2008 (pp. 25-27). Aarhus Universitet. http://www.lr.dk/planteavl/informationsserier/info-planter/plk08_a3_2_e_m_hansen.pdf

Stempels, H. C., Collier, C. A., Hebb, L., Smalley, B. & Frandsen, S. (2007). WASP-1: a lithium- and metal-rich star with an oversized planet. Royal Astronomical Society. Monthly Notices, 379(2), 773.

Stello, D., Kjeldsen, H. & Bedding, T. R. (2007). Asteroseismology: a powerful tool to complement planet transits. ASP Conference Series, 366, 247.

Mamdouh, W., E. A. Kelly, R., Dong, M., N. Kantorovich, L. & Besenbacher, F. (2008). Two-Dimensional Supramolecular Nanopatterns Formed by the Coadsorption of Guanine and Uracil at the Liquid/SolidInterface. Journal of the American Chemical Society, 130, 695-702. https://doi.org/10.1021/ja076832f

Bedding, T. R. & Kjeldsen, H. (2007). Observing solar-like oscillations. AIP Conference Proceedings, 948, 117.

Christensen, S. & Doherty, J. (2008). Using many pilot points and singular value decomposition in groundwater model calibration. In J. C. Refsgaard, K. Kovar, E. Haarder & E. Nygaard (Eds.), Calibration and Reliability in Groundwater Modelling: Credibility in modelling: Proc. ModelCARE'2007 (Copenhagen, September 2007) (Vol. IAHS Publication 320, pp. 235-239). IAHS Press.

Christensen, S. & Doherty, J. (2008). Using many pilot points and singular value decomposition in groundwater model calibration. In J. C. Refsgaard & E. Nygaard (Eds.), ModelCARE’2007 , nt. Conf. on Calibration and Reliability in Groundwater Modelling – Credibility in Modelling: Pre-published proceedings (Vol. 2, pp. 448-453). GEUS.

Jeppesen, J., Christensen, S. & Ladekarl, U. L. (2007). Use of a regional model to simulate the historical water cycle of the Copenhagen Area 1850-2003. Poster session presented at ModelCARE’2007 , Int. Conf. on Calibration and Reliability in Groundwater Modelling – Credibility in Modelling, København, Denmark.

Poulsen, S. E., Christensen, S. & Rasmussen, K. R. (2008). An investigation of the interaction between the unsaturated zone, aquifer, and stream during a period of groundwater abstraction. Poster session presented at ModelCARE’2007 , Int. Conf. on Calibration and Reliability in Groundwater Modelling – Credibility in Modelling, København, Denmark.

Kristensen, K. & Ericson, L. (2008). Relation between growth characteristics and yield of barley in different environments. Poster session presented at Eucarpia symposium: Plant Breeding for organic and low-input agriculture: dealing with genotype-environment interactions, Wageningen, Netherlands.

Buch, L. H., Sørensen, A. C., Lassen, J., Berg, P. & Sørensen, M. K. (2009). Co-operation between Nordic and US Holstein alters the ratio between the traits that contribute to total merit. In M. Klopcic, R. Reents, J. Philipson & A. Kuipers (Eds.), Breeding for robustness in cattle (First published ed., Vol. 126, pp. 75-79). Wageningen Academic Publishers.

Foesel, B. U., Gieseke, A., Schwermer, C., Stief, P., Koch, L., Cytryn, E., de la Torré, J. R., van Rijn, J., Minz, D., Drake, H. L. & Schramm, A. (2008). Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina -like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm. FEMS Microbiology Ecology, 63, 192-204. https://doi.org/10.1111/j.1574-6941.2007.00418.x

Stief, P. & Schramm, A. (2008). Denitrifikation und N₂O-Produktion im Darm aquatischer Makrofauna-Arten. Abstract from Jahrestagung der Deutschen Gesellschaft für Limnologie, Konstanz, Germany.

Volkov, V. S., Bozhevolnyi, S. I., Frandsen, L. H. & Kristensen, M. (2007). Direct Observation of Surface Mode Excitation and Slow Light Coupling ind Photonic Crystal Waveguides. Nano Letters, 7(8), 2341-2345.

Martelli, C., Canning, J., Kristensen, M. & Groothoff, N. I. (2008). Ice Formation Inside of Micrometer-Diameter Glass Capillary Fibres with Corrugations. Paper presented at International Congress on Glass (ICG), Strassborug, France.

Canning, J., Skivesen, N., Kristensen, M., Frandsen, L., Lavrinenko, A., Martelli, C. & Tetu, A. (2007). Mapping the broadband polarization properties of linear 2D SOI photonic crystal waveguides. Optics Express, 15(23).

Skivesen, N., Kristensen, M., Kjems, J., Frandsen, L. H., Borel, P. I. & Tetu, A. (2007). Metal-clad waveguides anvendt som optiske bio-sensorer. D O P S - Nyt, 07(1), 20.

Skivesen, N. & Kristensen, M. (2007). Protein detection with photonic-crystal waveguide sensor. D O P S - Nyt, 07(2), 8.

Fage-Pedersen, J., Frandsen, L. H., Lavrinenko, A. V., Borel, P. I., Lirong, Y., Tetu, A. & Kristensen, M. (2007). Electro-optic property and use of slow ligth. D O P S - Nyt, 7(2), 14.

Kraft, J. F., Vestentoft, K., Christensen, B. H., Lovschall, H. & Balling, P. (2008). Calculus removal on a root cement surface by ultrashort laser pulses. Applied Surface Science, 254(7), 1895-1899.

Stief, P. & Schramm, A. (2008). Nitrous Oxide Production by Abundant Benthic Macrofauna. Abstract from 30th Congress of the International Association of Theoretical and Applied Limnology, Montreal, Quebec, Canada.

Sorensen, D. (2009). Developments in statistical analysis in quantitative genetics. Genetica, 136(2), 319-332. https://doi.org/10.1007/s10709-008-9303-5

Varona, L., Sorensen, D. & Thompson, R. (2007). Analysis of litter size and average litter weight in pigs using a recursive model. Genetics, 177, 1791-1799. https://doi.org/10.1534/genetics.107.077818

Kjærgaard, M. B. (2006). "Pervasive" trends 2006. (Forskningsformidlende rapport ed.) Komialt - Vidennetværk for Pervasive Communication - Pixibog.

Knudsen, M. & Wiuf, C. (2008). A Markov chain approach to Randomly Grown Graphs. Journal of Applied Mathematics. https://doi.org/10.1155/2008/190836

Brameier, M. & Wiuf, C. (2007). Ab initio identification of human miRNAs for genome scanning based on structure motifs. BMC. Bioinformatics, 8(478).

Lamy, P., Andersen, C. L., Andersen, L. D., Tørring, N. & Wiuf, C. (2007). A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays. BMC Bioinformatics, 8(434).

Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, C. (2007). Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comp Biol, 3(e320). https://doi.org/10.1371/journal.pcbi.0030230.eor

Stumpf, M. P., Kelly, W. P., Thorne, T. & Wiuf, C. (2007). Evolution at the system level: The natural history of protein interaction networks. TREE, 22(7), 366-372.

Ewens, W. E., Choudhury, A. R., Lewontin, R. C. & Wiuf, C. (2007). Two variance results in population genetics theory. Math Popul Stud, 14, 93-110. https://doi.org/10.1080/08898480701298376

Brameier, M. & Wiuf, C. (2007). Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps. J Biomed Inform, 40, 160-173. https://doi.org/10.1016/j.jbi.2006.05.001

Cuenca, A., Asmussen-Lange, C. A. & Borchsenius, F. (2008). A dated phylogeny of the palm tribe Chamaedoreeae supports Eocene dispersal between Africa, North and South America. Molecular Phylogenetics and Evolution. https://doi.org/10.1016/j.ympev.2007.10.010

Dinér, P., Laursen, A. K. K., Lie, M. A. & Jørgensen, K. A. (2008). On the Origin of the Stereoselectivity in Organocatalysed Reactions with Trimethylsilyl-Protected Diarylprolinol. Chemistry - A European Journal, 14, 122-127.

Frandsen, J., Østergaard, L. & Jensen, E. B. V. (2008). Testing the reproducibility of Diffusion Tensor Imaging at 3.0 T. Poster session presented at Forskningens Dag, Århus, Denmark.

Mortensen, A., Nielsen, E., Matthey, T. & Drewsen, M. (2007). Radio frequency field-induced persistent long-range ordered structures in two-species ion Coulomb crystals. J. Phys. B: At. Mol. Opt. Phys., 40, F223-F229.

Skivesen, N., Tetu, A., Kristensen, M., Kjems, J., Frandsen, L. H. & Borel, P. I. (2008). Protein detection with a planar photonic-crystal sensor. Paper presented at CLEO-EU, Munich, Germany.

Hendricks, R., Grant, D. M., Herskind, P. F., Dantan, A. & Drewsen, M. (2007). An all-optical ion-loading technique for scalable microtrap architectures. Applied Physics B: Lasers and Optics, 88(507).

Møller, D., Sørensen, J. L., Thomsen, J. B. & Drewsen, M. (2007). Efficient qubit detection using alkaline-earth-metal ions and a double stimulated Raman adiabatic process. Physical Review A, 76(062321).

Bock, K., Besenbacher, F. & Didrichsen, B. (2007). Du store kineser. Berlingske Tidende.

Nissen, P. E. & Asplund, M. (2007). Lithium isotopic abundances in stars. E S O Astrophysics Symposia, 3-8.

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Nikinmaa, M. & Weber, R. E. (1984). Hypoxic acclimation in the lamprey, Lampetra fluviatilis; Organismic and erythrocytic responses. Journal of Experimental Biology, 109-119.

INGVORSEN, K., ZEHNDER, AJB. & JØRGENSEN, BB. (1984). Kinetics of Sulfate and Acetate Uptake by Desulfobacter-Postgatei. Applied and Environmental Microbiology, 47(2), 403-408.

INGVORSEN, K. & JØRGENSEN, BB. (1984). Kinetics of Sulfate Uptake by Fresh-Water and Marine Species of Desulfovibrio. Archives of Microbiology, 139(1), 61-66.

Holm-Nielsen, L. B. & Barfod, A. S. (1984). Las investigaciones etnobotánicas entre los Cyapas y los Coaiqueres. Miscelanea Antropologica Ecuatoriana.

Olesen, J. M. (1984). Majs. Høst.

Olesen, J. M. (1984). Majs - et naturprodukt. Høst.

Jensen, P. B. (1984). New Danish encyrtids (Hymenoptera, Encyrtidae). In memory of R.W.Schlick. Entomologiske Meddelelser, 51, 97-101.

Cedhagen, T. (1984). Protozoa (Encelliga organismer). Zoologiska Institutionen, Göteborgs Universitet.

Kristensen, J. H. & Nateewathana, A. (1984). Responses of polychaete families to monsoon- and offshore mining-associated sediment disturbance. In: P. A. Hutchings (ed.) Proceedings of the First International Polychaete Conference, Sydney. The Linnean Society of N. S. W., Australia, 279-291.

Olesen, J. M. (1984). Ris. Høst.

Olesen, J. M. (1984). Ris - et naturprodukt. Høst.

Holm-Nielsen, L., Øllgaard, B. & Molau, U. (1984). Scandinavian botanical research in Ecuador. Botanical Institute, University of Aarhus.

Clark, A. G. & Bundgaard, J. (1984). Selection components in background replacement lines of Drosophila. Genetics, 108, 181-200.

Barfod, A. S. (1984). Sinharaja: Rejseberetning fra Sri Lankas regnskov. Regnskov, 3, 12-14.

Charuchinda, M. & Hylleberg, J. (1984). Skeletal extension of Acropora formosa at a fringing reef in the Andaman Sea. Coral Reefs, 3, 215-219.

Weber, R. E. & Hartvig, M. (1984). Specific fetal hemoglobin underlies the fetal-maternal difference in blood O2 affinity in a viviparous teleost. Molecular Physiology, 6, 27-32.

Brix, H., Lyngby, J. E., Buhrmann Nielsen, S., Riber, H. H., Schierup, H.-H., Burian-Hansen, P. & Tholander, B. (1984). Spildevandsrensning i rodzoneanlæg: Hvad sker der mellem tilløb og afløb. Stads og Havneingenioeren, 4, 110-113.

Cedhagen, T. (1984). Sveriges polychaetfauna. Zoologiska Institutionen, Göteborgs Universitet.

Barfod, A. S. (1984). Taxonomy of Ecuadorean Anacardiaceae.

Baatrup, E. (1984). The sense of taste in the lamprey.

Lyngby, J. E. & Brix, H. (1984). The uptake of heavy metals in eelgrass (Zostera marina L.) and their effects on growth. Ecological Bulletin (Stockholm), 36, 81-89.

Lyngby, J. E., Brix, H., Envirodan & Amtsvandvæsenet, Nordjylland (amtskommune) (1984). Tungmetalundersøgelser 1981-1983: rapport til Nordjyllands amtskommune, jan. 1984. Envirodan.

Lyngby, J. E. & Brix, H. (1984). Tungmetalundersøgelser 1981-1983. Rapport: Tungmetalundersøgelser i farvandene omkring Nordjylland. Limfjordskomiteen.

Olesen, J. M. (1984). Udviklingsbiologi i skolebøger.

Lyngby, J. E. & Brix, H. (1983). A comparison of eelgrass (Zostera marina L.), the common mussel (Mytilus edulis L.) and sediment for monitoring heavy metal pollution in coastal areas. Proceedings of the International Conference on Heavy Metals in the Environment, 830-833.

Weber, R. E., Wells, R. M. G. & Rossetti, J. E. (1983). Allosteric interactions governing oxygen equilibria in the hemoglobin system of the spiny dogfish, Squalus acanthias. Journal of Experimental Biology, 103, 109-120.

Weber, R. E., Wells, R. M. & Tougaard, S. (1983). Antagonistic effect of urea on oxygenation-linked binding of ATP in an elasmobranch hemoglobin. Life Sciences, 32(18), 2157-61.

Bundgaard, J. (1983). Biologernes Nye Arbejdsmarked: Undersøgelse af biologers erhvervsfunktioner. Københavns og Arhus Universiteter, cand.scient'er i biologi 1970-81(Rapport afgivet til Undervisningsministeriet af projektet UBE-82, september 1983). Trykkeriet, Det fysiske Institut, Aarhus Universitet.

Baatrup, E. (1983). Ciliated receptors in the pharyngeal terminal buds of larval Lampetra planeri (Bloch) (Cyclostomata). Acta Zoologica (Stockholm), 64(1), 67-75.

JØRGENSEN, BB. & REVSBECH, NP. (1983). Colorless Sulfur Bacteria, Beggiatoa Spp and Thiovulum Spp in O-2 and H2s Microgradients. Applied and Environmental Microbiology, 45(4), 1261-1270.

Holm-Nielsen, L. B. & Øllgaard, B. (1983). Den ecuadoreanske Amazon-skov. Naturens Verden, (10).

Brix, H., Lyngby, J. E. & Schierup, H.-H. (1983). Eelgrass (Zostera marina L.) as an indicator organism of trace metals in the Limfjord, Denmark. Marine Environmental Research, 8, 165-181.

Jensen, F. B., Nikinmaa, M. & Weber, R. E. (1983). Effects of exercise stress on acid-base balance and respiratory function in blood of the teleost Tinca tinca. Respiratory Physiology and Neurobiology, 51(3), 291-301.

Wilhelm Filho, D. & Weber, R. E. (1983). Functional characterization of hemoglobins of South Brazilian freshwater teleosts- II. Three cichlids (Crenicichla lepidota, Aeguidens portalegrensis and Geophagus brasiliensis). Comparative Biochemistry & Physiology; A: Comparative Physiology, 75A, 483-489.

Wilhelm Filho, D. & Weber, R. E. (1983). Functional characterization of hemoglobins of South Brazilian freshwater teleosts- I. Multiple hemoglobins from the gut/gill breather, Callichthys callichthys. Comparative Biochemistry and Physiology (historisk, uspecificeret), 75A, 475-482.

Coyne, J. A., Bundgaard, J. & Prout, T. (1983). Geographical variation of tolerance to environmental stress in Drosophila pseudoobscura. American Naturalist, 122, 474-488.

Petersen, J. H. (1983). Lakporesvampene (Ganoderma) i Danmark og Europa. Svampe, 7, 1-11.

Hylleberg, J. (1983). Message from the Danish Advisor at Phuket Marine Biological Center. (in Thai and English). Phuket Marine Biological Center. Special Publications, 1, 18-21.

REVSBECH, NP., JØRGENSEN, BB., BLACKBURN, TH. & COHEN, Y. (1983). Microelectrode Studies of the Photosynthesis and O-2, H2s, and Ph Profiles of a Microbial Mat. Limnology and Oceanography, 28(6), 1062-1074.

Balslev, H. (1983). New taxa and combinations in neotropical Juncus (Juncaceae). Brittonia, 35(1), 302-308.

Jensen, P. B. (1983). Notes on Encyrtidae (Hymenoptera, Chalcidoidea) described or recorded from Denmark. Entomologiske Meddelelser, 50, 7-10.

Wells, R. M. G. & Weber, R. E. (1983). Oxygenational properties and phosphorylated metabolic intermediates in blood and erythrocytes of the dogfish, Squalus acanthias. Journal of Experimental Biology, 103, 95-108.

JØRGENSEN, BB., REVSBECH, NP. & COHEN, Y. (1983). Photosynthesis and Structure of Benthic Microbial Mats - Microelectrode and Sem Studies of 4 Cyanobacterial Communities. Limnology and Oceanography, 28(6), 1075-1093.

REVSBECH, NP. & JØRGENSEN, BB. (1983). Photosynthesis of Benthic Microflora Measured with High Spatial-Resolution by the Oxygen Microprofile Method - Capabilities and Limitations of the Method. Limnology and Oceanography, 28(4), 749-756.

Petersen, J. H. & Knudsen, H. J. (1983). Politikens svampebog. (1-4 ed.)

Lyngby, J. E. & Brix, H. (1983). Seasonal changes in the concentrations of Ca, Fe, K, Mg, Mn and Na in eelgrass (Zostera marina L.) in the Limfjord, Denmark. Aquatic Botany, 17, 107-117.

Baatrup, E. (1983). Terminal buds in the branchial tube of the brook lamprey (Lampetra planeri (Bloch)) - Putative respiratory monitors. Acta Zoologica (Stockholm), 64(3), 139-147.

Brix, H. & Lyngby, J. E. (1983). The Distribution of some Metallic Elements in Eelgrass (Zostera marina L.) and Sediment in the Limfjord, Denmark. Estuarine, Coastal and Shelf Science, 16, 455-467.

Brix, H., Lyngby, J. E. & Schierup, H.-H. (1983). The reproducibility in the determination of heavy metals in marine plant material - an interlaboratory calibration. Marine Chemistry, 12, 69-85.

Hylleberg, J. (1983). The rooms of the Reference Collection. (In Thai and English). Phuket Marine Biological Center. Special Publications, 1, 24-28.

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Anne Kirstine Mehlsen