Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Larsen, K. E. (2022). Sus scrofa domesticus mesenecephalic astrocyte-derived neurotrophic factor (MANF) gene, promoter region and partial cds. GenBank Access No. OK337617. Dataset

Larsen, K. E. (2022). Sus scrofa domesticus cerebral dopamine neurotrophic factor (CDNF) mRNA, complete cds. GenBank Access No. OK268246. Dataset

Anker, A. S., Kjær, E. T. S., Juelsholt, M., Christiansen, T. L., Skjærvø, S. L., Jørgensen, M. R. V., Kantor, I., Sørensen, D. R., Billinge, S. J. L., Selvan, R. & Jensen, K. M. Ø. (2022). Extracting structural motifs from pair distribution function data of nanostructures using explainable machine learning. npj Computational Materials, 8(1), Article 213. https://doi.org/10.1038/s41524-022-00896-3

Musaeus, L. H., Sørensen, M.-L. S. K., Palfi, B. S., Iversen, O. S., Klokmose, C. N. & Petersen, M. G. (2022). CoTinker: Designing a Cross-device Collaboration Tool to Support Computational Thinking in Remote Group Work in High School Biology. In Participative Computing for Sustainable Futures : Proceedings of the 12th Nordic Conference on Human-Computer Interaction (NordiCHI’22) Article 49 Association for Computing Machinery. https://doi.org/10.1145/3546155.3546709

Sørensen, M.-L. S. K., Fog, B. V., Musaeus, L. H. & Petersen, M. G. (2022). Knit x Code: Exploring a Craftsmanship-driven Approach to Computational Thinking. In Participative Computing for Sustainable Futures : Adjunct Proceedings of the 12th Nordic Conference on Human-Computer Interaction (NordiCHI'22) Article 48 Association for Computing Machinery. https://doi.org/10.1145/3547522.3547680

Kissling, W. D., Shi, Y., Koma, Z., Meijer, C., Ku, O., Nattino, F., Seijmonsbergen, A. C. & Grootes, M. W. (2022). Laserfarm – A high-throughput workflow for generating geospatial data products of ecosystem structure from airborne laser scanning point clouds. Ecological Informatics, 72, Article 101836. https://doi.org/10.1016/j.ecoinf.2022.101836

Kaspersen, M. H., Bilstrup, K. E. K., Van Mechelen, M., Hjort, A., Bouvin, N. O. & Petersen, M. G. (2022). High school students exploring machine learning and its societal implications: Opportunities and challenges. International Journal of Child-Computer Interaction, 34, Article 100539. https://doi.org/10.1016/j.ijcci.2022.100539

Van Limbergen, T., Bonné, R., Hustings, J., Valcke, R., Thijs, S., Vangronsveld, J. & Manca, J. V. (2022). Plant microbial fuel cells from the perspective of photovoltaics: Efficiency, power, and applications. Renewable and Sustainable Energy Reviews, 169, Article 112953. https://doi.org/10.1016/j.rser.2022.112953

Nguyen-Ngoc, L., Dao, H. V., Lund-Hansen, L. C., Vo, T. S. & Smith, W. O. (2022). A special issue on the 100th Anniversary of Institute of Oceanography, Vietnam Academy of Science and Technology. Regional Studies in Marine Science, 56, Article 102669. https://doi.org/10.1016/j.rsma.2022.102669

Knattrup, Y. & Elm, J. (2022). Clusteromics IV: The Role of Nitric Acid in Atmospheric Cluster Formation. ACS Omega, 7(35), 31551–31560. https://doi.org/10.1021/acsomega.2c04278

Ahmed, S. Z., Weidner, C. A., Jensen, J. H. M., Sherson, J. & Lewandowski, H. (2022). Student use of a quantum simulation and visualization tool. European Journal of Physics, 43(6), Article 065703. https://doi.org/10.1088/1361-6404/ac93c7

Madsen, O. L. & Møller-Pedersen, B. (2022). Using supplementary properties to reduce the need for documentation. In T. Margaria & B. Steffen (Eds.), Leveraging Applications of Formal Methods, Verification and Validation. Software Engineering - 11th International Symposium, ISoLA 2022, Proceedings: Software Engineering (pp. 35-59). Springer. https://doi.org/10.1007/978-3-031-19756-7_4

Wørmer, G. J., Poulsen, T. B., Nørby, P. & Villadsen, N. L. (2019). The synthesis of streptazone A. Poster session presented at Organic chemistry in the pharmaceutical, agrochemical and contract manufacturing industries.

Wørmer, G. J., Villadsen, N. L., Poulsen, T. & Nørby, P. (2021). Concise asymmetric syntheses of streptazone A and abikoviromycin. Poster session presented at 21st Tetrahedron Symposium.

Hangiu, O., Compte, M., Dinesen, A., Navarro, R., Tapia-Galisteo, A., Mandrup, O. A., Erce-Llamazares, A., Lázaro-Gorines, R., Nehme-Álvarez, D., Domínguez-Alonso, C., Harwood, S. L., Alfonso, C., Blanco, B., Rubio-Pérez, L., Jiménez-Reinoso, A., Díez-Alonso, L., Blanco, F. J., Sanz, L., Howard, K. A. & Álvarez-Vallina, L. (2022). Tumor targeted 4-1BB agonist antibody-albumin fusions with high affinity to FcRn induce anti-tumor immunity without toxicity. iScience, 25(9), Article 104958. https://doi.org/10.1016/j.isci.2022.104958

Baum, C., Braun, L., Munch-Hansen, A. & Scholl, P. (2022). MozZ2karella: Efficient Vector-OLE and Zero-Knowledge Proofs over Z2k. In Y. Dodis & T. Shrimpton (Eds.), Advances in Cryptology – CRYPTO 2022 - 42nd Annual International Cryptology Conference, CRYPTO 2022, Proceedings (pp. 329-358). Springer. https://doi.org/10.1007/978-3-031-15985-5_12

Wray, K. B., Nash, L. & Simon, J. (2022). What we publish in Metascience. Metascience, 31(3), 293-296. https://doi.org/10.1007/s11016-022-00819-4

R. Bennett, N., Sio, C. K., Schauble, E., Lesher, C., Wimpenny, J. & Shahar, A. (2022). Iron isotope evidence of an impact origin for main-group pallasites. Geochemical Perspectives Letters, 23, 6-10. https://doi.org/10.7185/geochemlet.2229

Johnson, A. S., Pérez-Salinas, D., Siddiqui, K. M., Choi, S., Volckaert, K., Majchrzak, P. E., Ulstrup, S., Hallman, K., Haglund, R. F., Günther, C. M., Pfau, B., Eisebitt, S., Backes, D., Maccherozzi, F., Fitzpatrick, A., Dhesi, S., Gargiani, P., Valvidares, M., Choi, H. ... Wall, S. E. (2022). Ultrafast X-Ray hyperspectral imaging of the photo-induced phase transition in VO₂. In International Conference on Ultrafast Phenomena, UP 2022 Article Tu3A.2 Optica Publishing Group (formerly OSA). https://doi.org/10.1364/UP.2022.Tu3A.2

Rasmussen, F. R., Kubecka, J. & Elm, J. (2022). Contribution of Methanesulfonic Acid to the Formation of Molecular Clusters in the Marine Atmosphere. The Journal of Physical Chemistry A, 126(40), 7127–7136. https://doi.org/10.1021/acs.jpca.2c04468

Skoven, C. S., Tomasevic, L., Kvitsiani, D., Pakkenberg, B., Dyrby, T. B. & Siebner, H. R. (2022). Dose-response relationship between the variables of unilateral optogenetic stimulation and transcallosal evoked responses in rat motor cortex. Frontiers in Neuroscience, 16, Article 968839. https://doi.org/10.3389/fnins.2022.968839

Nayeri, Z., Aliakbari, F., Afzali, F., Parsafar, S., Gharib, E., Otzen, D. E. & Morshedi, D. (2022). Characterization of exogenous αSN response genes and their relation to Parkinson's disease using network analyses. Frontiers in Pharmacology, 13, Article 966760. https://doi.org/10.3389/fphar.2022.966760

Ade, C., Marcelino, T. F., Dulchavsky, M., Wu, K., Bardwell, J. C. A. & Städler, B. (2022). Microreactor equipped with naturally acid-resistant histidine ammonia lyase from an extremophile. Materials Advances, 3(8), 3649-3662. https://doi.org/10.1039/d2ma00051b

Docampo, M. A. R., Qian, X., Ade, C., Marcelino, T. F., Ceccato, M., Foss, M., Hovorka, O. & Stadler, B. (2023). pH-Responsive Motors and their Interaction with RAW 264.7 Macrophages. Advanced Materials Interfaces, 10(1), Article 2201509. https://doi.org/10.1002/admi.202201509

Caragiannis, I., Shah, N. & Voudouris, A. A. (2022). The metric distortion of multiwinner voting. Artificial Intelligence, 313, Article 103802. https://doi.org/10.1016/j.artint.2022.103802

Brown, E. L., Rooney, T. O., Moucha, R., Stein, S. & Stein, C. A. (2022). Temporal evolution of mantle temperature and lithospheric thickness beneath the ∼1.1 Ga Midcontinent Rift, North America: Implications for rapid motion of Laurentia. Earth and Planetary Science Letters, 598, Article 117848. https://doi.org/10.1016/j.epsl.2022.117848

Anand, B., Kim, K. H., Sonne, C. & Bhardwaj, N. (2022). Advanced sanitation products infused with silver nanoparticles for viral protection and their ecological and environmental consequences. Environmental Technology and Innovation, 28, Article 102924. https://doi.org/10.1016/j.eti.2022.102924

Thøgersen, J., Weidner, T. & Jensen, F. (2022). The primary photo-dissociation dynamics of aqueous formamide and dimethylformamide. Physical Chemistry Chemical Physics, 24(40), 24695-24705. https://doi.org/10.1039/d2cp03166c

Colgan, W., Henriksen, H. J., Bennike, O., Ribeiro, S., Seidenfaden, I. K., Graversgaard, M., Busck, A. G., Fruergaard, M., Knudsen, M. H., Hopper, J., Sonnenborg, T., Skjerbæk, M. R., Bjørk, A. A., Steffen, H., Tarasov, L., Nerem, R. S. & Kjeldsen, K. K. (2022). Sea-level rise in Denmark: paleo context, recent projections and policy implications. GEUS Bulletin, 49, Article 8315. https://doi.org/10.34194/geusb.v49.8315

Nguyen, D. D., Jones, N. C., Hoffmann, S. V. & Spanget-Larsen, J. (2023). Near and vacuum UV polarization spectroscopy of 1,4-distyrylbenzene. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 286, Article 122019. https://doi.org/10.1016/j.saa.2022.122019

Jørgensen, P. & Yakimov, M. (2022). Green groupoids of 2-Calabi–Yau categories, derived Picard actions, and hyperplane arrangements. Transactions of the American Mathematical Society, 375(11), 7981-8031. https://doi.org/10.1090/tran/8770

Grinderslev, J. B., Skov, L. N., Andreasen, J. G., Ghorwal, S., Skibsted, J. & Jensen, T. R. (2022). Methylamine Lithium Borohydride as Electrolyte for All-Solid-State Batteries. Angewandte Chemie - International Edition, 61(32), Article e202203484. https://doi.org/10.1002/anie.202203484

Coutant, M., Malmkvist, J., Kaiser, M., Foldager, L. & Herskin, M. S. (2022). Piglets' acute responses to local anesthetic injection and surgical castration: Effects of the injection method and interval between injection and castration. Frontiers in Veterinary Science, 9, Article 1009858. https://doi.org/10.3389/fvets.2022.1009858

Rachuri, R. & Scholl, P. (2022). Le Mans: Dynamic and Fluid MPC for Dishonest Majority. In Y. Dodis & T. Shrimpton (Eds.), Advances in Cryptology – CRYPTO 2022 - 42nd Annual International Cryptology Conference, CRYPTO 2022, Proceedings (pp. 719-749). Springer. https://doi.org/10.1007/978-3-031-15802-5_25

Wu, R., Ou, X., Zhang, L., Song, X., Wang, Z., Dong, M. & Liu, L. (2022). Electric Field Effect on Inhibiting the Co-fibrillation of Amyloid Peptides by Modulating the Aggregation Pathway. Langmuir, 38(40), 12346-12355. https://doi.org/10.1021/acs.langmuir.2c02055

Fonseca Poza, A. A., Espinoza, C., Nielsen, L. P., Marshall, I. P. G. & Gallardo, V. A. (2022). Bacterial community of sediments under the Eastern Boundary Current System shows high microdiversity and a latitudinal spatial pattern. Frontiers in Microbiology, 13, Article 1016418. https://doi.org/10.3389/fmicb.2022.1016418

Neven, A., Christiansen, A. V. & Renard, P. (2022). Automatic stochastic 3D clay fraction model from tTEM survey and borehole data. Scientific Reports, 12(1), Article 17112. https://doi.org/10.1038/s41598-022-21555-z

Le, L. T. M., Drakulic, S., Nyengaard, J. R., Golas, M. M. & Sander, B. (2022). Structural Organization of Human Full-Length PAR3 and the aPKC–PAR6 Complex. Molecular Biotechnology, 64(12), 1319-1327. https://doi.org/10.1007/s12033-022-00504-1

Borowski, M., Fog, B. V., Griggio, C. F., Eagan, J. R. & Klokmose, C. N. (2023). Between Principle and Pragmatism: Reflections on Prototyping Computational Media with Webstrates. ACM Transactions on Computer-Human Interaction, 30(4), Article 61. https://doi.org/10.1145/3569895

Ung, K. L., Winkler, M., Schulz, L., Kolb, M., Janacek, D. P., Dedic, E., Stokes, D. L., Hammes, U. Z. & Pedersen, B. P. (2022). Structures and mechanism of the plant PIN-FORMED auxin transporter. Nature, 609(7927), 605-610. https://doi.org/10.1038/s41586-022-04883-y

Bergman, J. & Schierup, M. H. (2022). Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes. Genome Biology, 23, Article 215. https://doi.org/10.1186/s13059-022-02784-x

Bian, L., Chappaz, A., Schovsbo, N. H. & Sanei, H. (2022). A new vanadium species in black shales: Updated burial pathways and implications. Geochimica et Cosmochimica Acta, 338, 1-10. https://doi.org/10.1016/j.gca.2022.09.035

Wan Mahari, W. A., Wan Razali, W. A., Manan, H., Hersi, M. A., Ishak, S. D., Cheah, W., Chan, D. J. C., Sonne, C., Show, P. L. & Lam, S. S. (2022). Recent advances on microalgae cultivation for simultaneous biomass production and removal of wastewater pollutants to achieve circular economy. Bioresource Technology, 364, Article 128085. https://doi.org/10.1016/j.biortech.2022.128085

Lin, G., Lin, M., Qiao, J., Sejr, M. K., Steier, P., Meire, L. & Stedmon, C. A. (2022). Estimation of Atlantic Water transit times in East Greenland fjords using a ²³³U-²³⁶U tracer approach. Chemical Geology, 607, Article 121007. https://doi.org/10.1016/j.chemgeo.2022.121007

Lorentzen, J., Pedersen, D. V., Gadeberg, T. A. F. & Andersen, G. R. (2022). Structure determination of an unstable macromolecular complex enabled by nanobody-peptide bridging. Protein Science, 31(10), Article e4432. https://doi.org/10.1002/pro.4432

Nielsen, J. H., Pentlehner, D., Christiansen, L., Shepperson, B., Søndergaard, A. A., Chatterley, A. S., Pickering, J. D., Schouder, C. A., Muñoz, A. V., Kranabetter, L. & Stapelfeldt, H. (2022). Laser-Induced Alignment of Molecules in Helium Nanodroplets. In A. Slenczka & J. P. Toennies (Eds.), Molecules in Superfluid Helium Nanodroplets (pp. 381-445). Springer. https://doi.org/10.1007/978-3-030-94896-2_9

Chatterjee, K., Svoboda, J., Žikelić, Đ., Pavlogiannis, A. & Tkadlec, J. (2022). Social balance on networks: Local minima and best-edge dynamics. Physical Review E, 106(3), Article 034321. https://doi.org/10.1103/PhysRevE.106.034321

Nielsen, C. F. (2022). GPU accelerated Monte Carlo simulation of high-intensity pulsed laser-electron interaction. Computer Physics Communications, 278, Article 108425. https://doi.org/10.1016/j.cpc.2022.108425

Pacherres, C. O., Ahmerkamp, S., Koren, K., Richter, C. & Holtappels, M. (2022). Ciliary flows in corals ventilate target areas of high photosynthetic oxygen production. Current Biology, 32(19), 4150-4158.e3. https://doi.org/10.1016/j.cub.2022.07.071

Yengo, L., Vedantam, S., Marouli, E., Sidorenko, J., Bartell, E., Sakaue, S., Graff, M., Eliasen, A. U., Jiang, Y., Raghavan, S., Miao, J., Arias, J. D., Graham, S. E., Mukamel, R. E., Spracklen, C. N., Yin, X., Chen, S.-H., Ferreira, T., Highland, H. H. ... Understanding Society Scientific Group (2022). A saturated map of common genetic variants associated with human height. Nature, 610(7933), 704–712. https://doi.org/10.1038/s41586-022-05275-y

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