Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Gondelman, L., Hinrichsen, J. K., Pereira, M., Timany, A. & Birkedal, L. (2023). Verifying Reliable Network Components in a Distributed Separation Logic with Dependent Separation Protocols. Proceedings of the ACM on Programming Languages , 7(ICFP), 847-877. Article 217. https://doi.org/10.1145/3607859

Domenzain, D., Liu, L., Yélamos Vela, I. & Christiansen, A. V. (2023). 3D DC inversion, visualization, and processing of dense time-lapse data in fine domains applied to remediation monitoring. Geophysics, 88(5), E147-E158. https://doi.org/10.1190/geo2023-0093.1

Lemoine, R. T., Buitenwerf, R. & Svenning, J. C. (2023). Megafauna extinctions in the late-Quaternary are linked to human range expansion, not climate change. Anthropocene, 44, Article 100403. https://doi.org/10.1016/j.ancene.2023.100403

Araujo, N. D. S., Perez, R., Willot, Q., Defrance, M. & Aron, S. (2023). Facing lethal temperatures: Heat-shock response in desert and temperate ants. Ecology and Evolution, 13(9), Article e10438. https://doi.org/10.1002/ece3.10438

Faress, I., Khalil, V., Yamamoto, H., Sajgo, S., Yonehara, K. & Nabavi, S. (2023). Recombinase-independent AAV for anterograde transsynaptic tracing. Molecular Brain, 16(1), Article 66. https://doi.org/10.1186/s13041-023-01053-7

Zhong, Z. & Mottin, D. (2023). Knowledge-augmented Graph Machine Learning for Drug Discovery: From Precision to Interpretability. In KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 5841-5842). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599563

Frigo, D., Eggertsson, Ó., Prendin, A. L., Dibona, R., Unterholzner, L. & Carrer, M. (2023). Growth form and leaf habit drive contrasting effects of Arctic amplification in long-lived woody species. Global change biology, 29(20), 5896-5907. https://doi.org/10.1111/gcb.16895

Zhang, C., Reid, K., Sands, A. F., Fraimout, A., Schierup, M. H. & Merilä, J. (2023). De Novo Mutation Rates in Sticklebacks. Molecular Biology and Evolution, 40(9), Article msad192. https://doi.org/10.1093/molbev/msad192

Bandeira, E., Kumar, S., Lozano, A. I., Bettega, M. H. F., Hoffmann, S. V., Jones, N. C., Souza Barbosa, A. & Limao-Vieira, P. (2024). Valence and Rydberg excitations of 3-fluorotoluene in the 4.4–10.8 eV photoabsorption energy region. Journal of Quantitative Spectroscopy & Radiative Transfer, 312, Article 108796. https://doi.org/10.1016/j.jqsrt.2023.108796

Beer, A., Draganov, A., Hohma, E., Jahn, P., Frey, C. M. M. & Assent, I. (2023). Connecting the Dots: Density-Connectivity Distance unifies DBSCAN, k-Center and Spectral Clustering. In KDD 2023 : Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 80-92). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599283

Boegholm, N., Petriman, N. A., Loureiro-López, M., Wang, J., Vela, M. I. S., Liu, B., Kanie, T., Ng, R., Jackson, P. K., Andersen, J. S. & Lorentzen, E. (2023). The IFT81-IFT74 complex acts as an unconventional RabL2 GTPase-activating protein during intraflagellar transport. EMBO Journal, 42(18), Article e111807. https://doi.org/10.15252/embj.2022111807

Bornø, M. L., Zervas, A., Bak, F., Merl, T., Koren, K., Nicolaisen, M. H., Jensen, L. S. & Müller-Stöver, D. S. (2023). Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere. Science of the Total Environment, 905, Article 166888. https://doi.org/10.1016/j.scitotenv.2023.166888

Jorgensen, C., Troendle, E. P., Ulmschneider, J. P., Searson, P. C. & Ulmschneider, M. B. (2023). A least-squares-fitting procedure for an efficient preclinical ranking of passive transport across the blood–brain barrier endothelium. Journal of Computer-Aided Molecular Design, 37(11), 537-549. https://doi.org/10.1007/s10822-023-00525-1

Elmegaard, S. L., Teilmann, J., Rojano-Doñate, L., Brennecke, D., Mikkelsen, L., Balle, J. D., Gosewinkel, U., Kyhn, L. A., Tønnesen, P., Wahlberg, M., Ruser, A., Siebert, U. & Madsen, P. T. (2023). Wild harbour porpoises startle and flee at low received levels from acoustic harassment device. Scientific Reports, 13(1), Article 16691. https://doi.org/10.1038/s41598-023-43453-8

Macaulay, J. D. J., Rojano-Doñate, L., Ladegaard, M., Tougaard, J., Teilmann, J., Marques, T. A., Siebert, U. & Madsen, P. T. (2023). Implications of porpoise echolocation and dive behaviour on passive acoustic monitoring. The Journal of the Acoustical Society of America, 154(4), 1982-1995. https://doi.org/10.1121/10.0021163

Klapproth, C. (2023). A method for constructing minimal projective resolutions over idempotent subrings. Proceedings of the American Mathematical Society, 151(11), 4779-4792. https://doi.org/10.1090/proc/16470

Lupien, R., Uno, K. T., Rose, C., deRoberts, N., Hazan, C., de Menocal, P. & Polissar, P. (2023). Low-frequency orbital variations controlled climatic and environmental cycles, amplitudes, and trends in northeast Africa during the Plio-Pleistocene. Communications Earth & Environment, 4, Article 360. https://doi.org/10.1038/s43247-023-01034-7

Lupien, R. L. (2023). Past climate unravels the eastern African paradox. Nature, 620(7973), 279-280. https://doi.org/10.1038/d41586-023-02297-y

Schjønning, P., Lamandé, M., De Pue, J., Cornelis, W. M., Labouriau, R. & Keller, T. (2023). The challenge in estimating soil compressive strength for use in risk assessment of soil compaction in field traffic. In D. L. Sparks (Ed.), Advances in Agronomy (Vol. 178, pp. 61-105). Academic Press. https://doi.org/10.1016/bs.agron.2022.11.003

Chakraborty, S., Kayal, C., Mittal, R., Paraashar, M., Sanyal, S. & Saurabh, N. (2023). On the Composition of Randomized Query Complexity and Approximate Degree. In N. Megow & A. Smith (Eds.), Approximation, Randomization, and Combinatorial Optimization: Algorithms and Techniques, APPROX/RANDOM 2023 Article 63 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2023.63

Amireddy, P., Srinivasan, S. & Sudan, M. (2023). Low-Degree Testing over Grids. In N. Megow & A. Smith (Eds.), Approximation, Randomization, and Combinatorial Optimization: Algorithms and Techniques, APPROX/RANDOM 2023 Article 41 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2023.41

Tougaard, J., Beedholm, K. & Madsen, P. P. T. (2023). Temporary Threshold Shift in Porpoise Hearing: Effect of Experimental Protocol. In A. N. Popper, J. A. Sisneros, A. Hawkins & F. Thomsen (Eds.), The Effects of Noise on Aquatic Life: Principles and Practical Considerations Springer. https://doi.org/10.1007/978-3-031-10417-6_166-1

Rojano Doñate, L., Lamoni, L., Tougaard, J. & Findlay, C. R. (2023). Effect of Vessel Noise on Marine Mammals and Measures to Reduce Impact. In A. N. Popper, J. A. Sisneros, A. Hawkins & F. Thomsen (Eds.), The Effects of Noise on Aquatic Life: Principles and Practical Considerations Springer. https://doi.org/10.1007/978-3-031-10417-6_138-1

Remili, A., Dietz, R., Sonne, C., Samarra, F. I. P., Letcher, R. J., Rikardsen, A. H., Ferguson, S. H., Watt, C. A., Matthews, C. J. D., Kiszka, J., Rosing-Asvid, A. & McKinney, M. A. (2023). Varying Diet Composition Causes Striking Differences in Legacy and Emerging Contaminant Concentrations in Killer Whales across the North Atlantic. Environmental Science & Technology, 57(42), 16109–16120. https://doi.org/10.1021/acs.est.3c05516

Montiel, J., García-Soto, I., James, E. K., Reid, D., Cárdenas, L., Napsucialy-Mendivil, S., Ferguson, S., Dubrovsky, J. G. & Stougaard, J. (2023). Aromatic amino acid biosynthesis impacts root hair development and symbiotic associations in Lotus japonicus. Plant Physiology, 193(2), 1508-1526. https://doi.org/10.1093/plphys/kiad398

Baerends, E., Hvidt, A. K., Søgaard, O. S., Stærke, N. B., Andersen, S. D., Juhl, A. K., Dietz, L. L., Andreasen, S. R., Erikstrup, C., Østergaard, L., Tolstrup, M. & on behalf of the ENFORCE Study Group (2023). SARS-CoV-2 vaccine-induced antibodies protect against Omicron breakthrough infection. iScience, 26(9), Article 107621. https://doi.org/10.1016/j.isci.2023.107621

Roohi, M., Zhang, C., Taheri, M. & Basse-O’Connor, A. (2023). Synchronization of Fractional-Order Delayed Neural Networks Using Dynamic-Free Adaptive Sliding Mode Control. Fractal and Fractional, 7(9), Article 682. https://doi.org/10.3390/fractalfract7090682

Ciobotaru, C.-G. & Leitner, A. (2024). Chabauty limits of groups of involutions in SL(2,F) for local fields. Communications in Algebra, 52(4), 1408-1431. https://doi.org/10.1080/00927872.2023.2262588

Li, G., Zhao, Z., Wei, J. & Ulrich, T. (2023). Mineralization processes at the Daliangzi Zn-Pb deposit, Sichuan-Yunnan-Guizhou metallogenic province, SW China: Insights from sphalerite geochemistry and zoning textures. Ore Geology Reviews, 161, Article 105654. https://doi.org/10.1016/j.oregeorev.2023.105654

Ričko, S., Bitsch, R. S., Kaasik, M., Otevrel, J., Højgaard Madsen, M., Keimer, A. & Jørgensen, K. A. (2023). Enantioconvergent 6π Electrocyclization Enabled by Photoredox Racemization. Journal of the American Chemical Society, 145(38), 20913–20926. https://doi.org/10.1021/jacs.3c06227

Saikia, S., Dutta, J., Mishra, A. & Das, P. K. (2023). Lysozyme adsorption on carbonaceous nanoparticles probed by second harmonic light scattering. Physical Chemistry Chemical Physics, 38(38), 26112–26121. https://doi.org/10.1039/d3cp03511e

Chua, J. Q. I., Christensen, T. E. K., Palle, J., Wittig, N. K., Grünewald, T. A., Garrevoet, J., Spiers, K. M., Castillo-Michel, H., Schramm, A., Chien, W. L., Sobota, R. M., Birkedal, H. & Miserez, A. (2023). Biomineralization of mantis shrimp dactyl club following molting: Apatite formation and brominated organic components. Acta Biomaterialia, 170, 479-495. https://doi.org/10.1016/j.actbio.2023.08.054

Zhou, Y., Amarsi, A. M., Aguirre Børsen-Koch, V., Karlsmose, K. G., Collet, R. & Nordlander, T. (2023). 3D Stagger model atmospheres with FreeEOS: I. Exploring the impact of microphysics on the Sun. Astronomy and Astrophysics, 677, Article A98. https://doi.org/10.1051/0004-6361/202346398

Parmar, V. S., Thiel, A. M., Norre, M. S. & Overgaard, J. (2023). High-Pressure Investigation of a Five-Coordinate Dy Single-Molecule Magnet. Crystal Growth and Design, 23(9), 6410-6417. https://doi.org/10.1021/acs.cgd.3c00410

Sze, K. C. H., Wex, H., Hartmann, M., Skov, H., Massling, A., Villanueva, D. & Stratmann, F. (2023). Ice-nucleating particles in northern Greenland: annual cycles, biological contribution and parameterizations. Atmospheric Chemistry and Physics, 23(8), 4741-4761. https://doi.org/10.5194/acp-23-4741-2023

Qi, Y., Sadi, M. A., Hu, D., Zheng, M., Wu, Z., Jiang, Y. & Chen, Y. P. (2023). Recent Progress in Strain Engineering on Van der Waals 2D Materials: Tunable Electrical, Electrochemical, Magnetic, and Optical Properties. Advanced Materials, 35(12), Article 2205714. https://doi.org/10.1002/adma.202205714

Martens, A. K., Erwig, M., Patzig, J., Fledrich, R., Füchtbauer, E. M. & Werner, H. B. (2023). Targeted inactivation of the Septin2 and Septin9 genes in myelinating Schwann cells of mice. Cytoskeleton, 80(7-8), 290-302. https://doi.org/10.1002/cm.21736

Campante, T. L., Li, T., Ong, J. M. J., Corsaro, E., Cunha, M. S., Bedding, T. R., Bossini, D., Breton, S. N., Buzasi, D. L., Chaplin, W. J., Deal, M., García, R. A., Hill, M. L., Hon, M., Huber, D., Jiang, C., Kane, S. R., Kayhan, C., Kuszlewicz, J. S. ... Stello, D. (2023). Revisiting the Red Giant Branch Hosts KOI-3886 and ι Draconis: Detailed Asteroseismic Modeling and Consolidated Stellar Parameters. Astronomical Journal, 165(5), Article 214. https://doi.org/10.3847/1538-3881/acc9c1

Keller, J. G., Petersen, K. V., Mizielinski, K., Thiesen, C., Bjergbæk, L., Reguera, R. M., Pérez-Pertejo, Y., Balaña-Fouce, R., Trejo, A., Masdeu, C., Alonso, C., Knudsen, B. R. & Tesauro, C. (2023). Gel-Free Tools for Quick and Simple Screening of Anti-Topoisomerase 1 Compounds. Pharmaceuticals, 16(5), Article 657. https://doi.org/10.3390/ph16050657

Armbrecht, L., Focardi, A., Lawler, K. A., O’Brien, P., Leventer, A., Noble, T. L., Opdyke, B., Duffy, M., Evangelinos, D., George, S. C., Lieser, J., López-Quirós, A., Post, A., Ostrowski, M., Paulsen, I. & Armand, L. (2023). From the Surface Ocean to the Seafloor: Linking Modern and Paleo-Genetics at the Sabrina Coast, East Antarctica (IN2017_V01). Journal of Geophysical Research: Biogeosciences, 128(4), Article e2022JG007252. https://doi.org/10.1029/2022JG007252

Korkmaz, M., Mangıt, F., Dumlupınar, İ., Çolak, M. A., Akpınar, M. B., Koru, M., Pacheco, J. P., Ramírez-García, A., Yılmaz, G., Amorim, C. A., Özgencil, İ. K., İnnal, D., Yerli, S. V., Özkan, K., Akyürek, Z., Beklioğlu, M. & Jeppesen, E. (2023). Effects of Climate Change on the Habitat Suitability and Distribution of Endemic Freshwater Fish Species in Semi-Arid Central Anatolian Ecoregion in Türkiye. Water (Switzerland), 15(8), Article 1619. https://doi.org/10.3390/w15081619

Wu, J., Liang, Y., Wu, Y., Li, J., Lu, J., Lam, S. S., Naushad, M., Sonne, C. & Xia, C. (2023). Towards low polymer content transparent composites via novel integration engineering. Holzforschung, 77(4), 293-304. https://doi.org/10.1515/hf-2022-0150

Euclid consortium (2023). Euclid: modelling massive neutrinos in cosmology — a code comparison. Journal of Cosmology and Astroparticle Physics, 2023(6), Article 035. https://doi.org/10.1088/1475-7516/2023/06/035

Arias, C. A., Vera-Puerto, I. L. & Chaparro, T. R. (2023). Lecciones aprendidas. In K. Cross, K. Tondera, A. Rizzo, L. Andrews, B. Pucher, D. Istenič, N. Karres & R. McDonald (Eds.), Soluciones basadas en la naturaleza para el tratamiento de aguas residuales (pp. 332-337). IWA Publishing. https://doi.org/10.2166/9781789063035

Kumlin, J., Braun, C., Tresp, C., Stiesdal, N., Hofferberth, S. & Paris-Mandoki, A. (2023). Quantum optics with Rydberg superatoms. Journal of Physics Communications, 7(5), Article 052001. https://doi.org/10.1088/2399-6528/acd51d

Sølvsten, S. & van de Pol, J. (2023). Predicting Memory Demands of BDD Operations using Maximum Graph Cuts. In É. André & J. Sun (Eds.), Automated technology for verification and analysis: Part II (pp. 72-92). Springer. https://doi.org/10.1007/978-3-031-45332-8_4

Goffo, E., Gandolfi, D., Egger, J. A., Mustill, A. J., Albrecht, S. H., Hirano, T., Kochukhov, O., Astudillo-Defru, N., Barragan, O., Serrano, L. M., Hatzes, A. P., Alibert, Y., Guenther, E., Dai, F., Lam, K. W. F., Csizmadia, S., Smith, A. M. S., Fossati, L., Luque, R. ... Winn, J. N. (2023). Company for the Ultra-high Density, Ultra-short Period Sub-Earth GJ 367 b: Discovery of Two Additional Low-mass Planets at 11.5 and 34 Days. Astrophysical Journal Letters, 955(1), Article L3. https://doi.org/10.3847/2041-8213/ace0c7

Breed, C. A., Du Plessis, T., Engemann, K., Pauleit, S. & Pasgaard, M. (2023). Moving green infrastructure planning from theory to practice in sub-Saharan African cities requires collaborative operationalization. Urban Forestry and Urban Greening, 89, Article 128085. https://doi.org/10.1016/j.ufug.2023.128085

Muzzi, B., Albino, M., Petrecca, M., Innocenti, C., de Julián Fernández, C., Bertoni, G., Ibarra, M. R., Christensen, M., Avdeev, M., Marquina, C. & Sangregorio, C. (2023). Defect-Engineering by Solvent Mediated Mild Oxidation as a Tool to Induce Exchange Bias in Metal Doped Ferrites. Small Methods, 7(11), Article 2300647. https://doi.org/10.1002/smtd.202300647