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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Nielsen, K. H. & Kragh, G. (2023, Dec). Supporting Sustainable Institutional Changes to Promote Citizen Science. https://moodle.eu-citizen.science/course/view.php?id=40

Dinesen, A., Andersen, V. L., Elkhashab, M., Pilati, D., Bech, P., Fuchs, E., Samuelsen, T. R., Winther, A., Cai, Y., Märcher, A., Wall, A., Omer, M., Nielsen, J. S., Chudasama, V., Baker, J. R., Gothelf, K. V., Wengel, J., Kjems, J. & Howard, K. A. (2024). An Albumin-Holliday Junction Biomolecular Modular Design for Programmable Multifunctionality and Prolonged Circulation. Bioconjugate Chemistry, 35(2), 214-222. https://doi.org/10.1021/acs.bioconjchem.3c00491

Baudoin, F. & Lacaux, C. (2024). Fractional stable random fields on the Sierpiński gasket. https://doi.org/10.1016/j.spa.2024.104481

Borg, K. N., Cheng, G., Shetty, A., Wang, T., Tesauro, C., Knudsen, B. R. & Ho, Y.-P. (2023). An Integrated Platform for the Assessment of Fluorescent Signals in Hydrogel Beads Produced by Droplet Microfluidics. In Proceedings 2023 IEEE 23rd International Conference on Nanotechnology (NANO) (pp. 180-184). IEEE. https://doi.org/10.1109/NANO58406.2023.10231287

Gleirscher, M., van de Pol, J. & Woodcock, J. (2023). A manifesto for applicable formal methods. Software and Systems Modeling, 22(6), 1737-1749. https://doi.org/10.1007/s10270-023-01124-2

Hansen, R. R., Kristiansen, S. M., Damgaard, C. & Offenberg, J. (2024). Effects of ant mounts (Formica exsecta) on subsoil properties, in a heathland. European Journal of Soil Biology, 120, Article 103597. https://doi.org/10.1016/j.ejsobi.2024.103597

Rysgaard, S. (2023). Microbial life in Arctic sea ice. Abstract from Tara Polar Drift, Paris, France.

Rysgaard, S. (2023). Bridging the Fram Strait: GIOS & SIOS collaboration. Abstract from Svalbard science conference, Oslo, Norway.

Rysgaard, S. (2023). Water masses along west Greenland and their implication for glacier melt. Abstract from Arctic International Technical Conference, Nuuk, Ecuador.

Lorentzen, E. & Lechtreck, K. (2023). Intraflagellar transport. In The Chlamydomonas Sourcebook : Volume 3 : Cell Motility and Behavior (Vol. 3, pp. 307-336). Academic Press. https://doi.org/10.1016/C2019-0-02817-8

Aranha, D. F., Costache, A., Guimaraes, A. & Soria-Vazquez, E. (2024). A Practical Framework for Verifiable Computation over Encrypted Data. Abstract from 3rd Annual FHE.org Conference on Fully Homomorphic Encryption, Toronto, Canada. https://eprint.iacr.org/2023/1949

López-Blanco, E., Topp-Jørgensen, E., Christensen, T. R., Rasch, M., Skov, H., Arndal, M. F., Bret-Harte, M. S., Callaghan, T. V. & Schmidt, N. M. (2024). Towards an increasingly biased view on Arctic change. Nature Climate Change, 14(2), 152-155. https://doi.org/10.1038/s41558-023-01903-1

Fast, M. S., Weyer, K., Pedersen, H., Andersen, G. R. & Birn, H. (2024). Filtration and tubular handling of EWE-hC3Nb1, a complement inhibitor nanobody, in wild type mice and a mouse model of proteinuric kidney disease. FEBS Open Bio, 14(2), 322-330. https://doi.org/10.1002/2211-5463.13752

Lindkvist, T. T., Langeland, J., Kjær, C. & Nielsen, S. B. (2024). Empirical Calibration of a Cylindrical Ion Trap for Mass-Selected Gas-Phase Fluorescence Spectroscopy. Journal of The American Society for Mass Spectrometry, 35(1), 123-130. https://doi.org/10.1021/jasms.3c00349

García-Soto, I., Andersen, S. U., Monroy-Morales, E., Robledo-Gamboa, M., Guadarrama, J., Aviles-Baltazar, N. Y., Serrano, M., Stougaard, J. & Montiel, J. (2024). A collection of novel Lotus japonicus LORE1 mutants perturbed in the nodulation program induced by the Agrobacterium pusense strain IRBG74. Frontiers in Plant Science, 14, Article 1326766. https://doi.org/10.3389/fpls.2023.1326766

Martinez i Quer, A., Larsson, Y., Johansen, A., Arias, C. A. & Carvalho, P. N. (2024). Cyanobacterial blooms in surface waters – Nature-based solutions, cyanotoxins and their biotransformation products. Water Research, 251, Article 121122. https://doi.org/10.1016/j.watres.2024.121122

Jurkovičová, L., Ben Ltaief, L., Hult Roos, A., Hort, O., Finke, O., Albrecht, M., Hoque, Z., Klimešová, E., Sundaralingam, A., Antipenkov, R., Grenfell, A., Špaček, A., Szuba, W., Krikunova, M., Mudrich, M., Nejdl, J. & Andreasson, J. (2024). Bright continuously tunable vacuum ultraviolet source for ultrafast spectroscopy. Communications Physics, 7, Article 26. https://doi.org/10.1038/s42005-023-01513-5

Mariz Maia Neto, F., Snellings, R. & Skibsted, J. (2024). Aqueous carbonation of aged blended Portland cement pastes: Impact of the Al/Si ratio on the structure of the alumina-silica gel. Cement and Concrete Research, 177, Article 107428. https://doi.org/10.1016/j.cemconres.2024.107428

Singh, S. P., Rudra, A., Singh, Y. R., Dutta, S., Devi, N. R., Devi, A. B. & Trivedi, G. K. (2023). Source and depositional conditions of early Palaeogene coal-bearing sediments, Meghalaya, Eastern India. Journal of Earth System Science, 132(4), Article 184. https://doi.org/10.1007/s12040-023-02198-8

Hansen-Bruhn, I., Marks, M. & Hinge, M. (2024). Is titania acting as a synergist in intumescent fire retardant coatings designed for improving reaction to fire of wood? Fire Safety Journal, 143, Article 104075. https://doi.org/10.1016/j.firesaf.2023.104075

Chrenková, A., Bisiak, F. & Brodersen, D. E. (2024). Breaking bad nucleotides: understanding the regulatory mechanisms of bacterial small alarmone hydrolases. Trends in Microbiology, 32(8), 769-780. https://doi.org/10.1016/j.tim.2023.12.011

Yamasaki, S., Sasaki, Y., Karras, P. & Onizuka, M. (2023). Holistic Prediction on a Time-Evolving Attributed Graph. Proceedings of the Annual Meeting of the Association for Computational Linguistics, 61(1), 13676-13694. https://doi.org/10.18653/v1/2023.acl-long.765

Lampropoulos, K., Zardbani, F., Mamoulis, N. & Karras, P. (2023). Adaptive Indexing in High-Dimensional Metric Spaces. Proceedings of the VLDB Endowment, 16(10), 2525-2537. https://doi.org/10.14778/3603581.3603592

Zardbani, F., Mamoulis, N., Idreos, S. & Karras, P. (2023). Adaptive Indexing of Objects with Spatial Extent. Proceedings of the VLDB Endowment, 16(9), 2248-2260. https://doi.org/10.14778/3598581.3598596

Wu, S., Hou U, L. & Karras, P. (2023). k-Best Egalitarian Stable Marriages for Task Assignment. Proceedings of the VLDB Endowment, 16(11), 3240-3252. https://doi.org/10.14778/3611479.3611522

Gkountouna, O., Doka, K., Xue, M., Cao, J. & Karras, P. (2022). One-off Disclosure Control by Heterogeneous Generalization. In 31st USENIX Security Symposium (USENIX Security 22) (pp. 3363-3377). USENIX - The Advanced Computing Systems Association. https://www.usenix.org/conference/usenixsecurity22/presentation/gkountouna

Skitsas, K., Papageorgiou, I. G., Talebi, M. S., Kantere, V., Katehakis, M. N. & Karras, P. (2022). SIFTER: Space-Efficient Value Iteration for Finite-Horizon MDPs. Proceedings of the VLDB Endowment, 16(1), 90-98. https://doi.org/10.14778/3561261.3561269

Ciaperoni, M., Gionis, A., Katsamanis, A. & Karras, P. (2022). SIEVE: A Space-Efficient Algorithm for Viterbi Decoding. In Proceedings of the 2022 International Conference on Management of Data (pp. 1136-1145). Association for Computing Machinery. https://doi.org/10.1145/3514221.3526170

Jensen, A. B., Eller, F. & Sorrell, B. K. (2024). Comparative flooding tolerance of Typha latifolia and Phalaris arundinacea in wetland restoration: Insights from photosynthetic CO₂ response curves, photobiology and biomass allocation. Heliyon, 10(1), Article e23657. https://doi.org/10.1016/j.heliyon.2023.e23657

Foldager, L., Thorup, V. M., Pastell, M., Jensen, B. B. & Krogh, M. A. (2024). Prediction of mortality in land-based recirculating aquaculture system (RAS) trout farms. In P. Linde (Ed.), Symposium i Anvendt Statistik 2024 (pp. 17-24). Økonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium 2024 WEB.pdf

Dam, M., Centanni, M., Friberg, L. E., Centanni, D., Karlsson, M. O., Stensig Lynggaard, L., Johannsdottir, I. M., Wik, H. S., Malmros, J., Vaitkeviciene, G. E., Griskevicius, L., Hallböök, H., Jónsson, Ó. G., Overgaard, U., Schmiegelow, K., Hansen, S. N., Heyman, M. & Albertsen, B. K. (2024). Increase in peg-asparaginase clearance as a predictor for inactivation in patients with acute lymphoblastic leukemia. Leukemia, 38(4), 712-719. https://doi.org/10.1038/s41375-024-02153-6

Lauterbur, M. E., Munch, K. & Enard, D. (2023). Versatile Detection of Diverse Selective Sweeps with Flex-Sweep. Molecular Biology and Evolution, 40(6), Article msad139. https://doi.org/10.1093/molbev/msad139

Nielsen, H. & Andersen, C. (2024). Opprustningens onde spiraler. Klassekampen. https://klassekampen.no/artikkel/2024-01-02/opprustningens-onde-spiraler

Ruiz, P. A. & Baudoin, F. (2024). Korevaar-Schoen $p$-energies and their $Γ$-limits on Cheeger spaces.

Geraldi, N., Krause-Jensen, D., Ørberg, S. B., Frühe, L., Sejr, M. K., Hansen, J. L. S., Lund-Hansen, L. C. & Duarte, C. M. (2024). Environmental drivers of Arctic communities based on metabarcoding of marine sediment eDNA. Proceedings of the Royal Society B: Biological Sciences, 291(2015), Article 20231614. https://doi.org/10.1098/rspb.2023.1614

Plum-Jensen, L. E., Marshall, I. P. G. & Schramm, A. (2024). First single-strain enrichments of Electrothrix cable bacteria, description of E. aestuarii sp. nov. and E. rattekaaiensis sp. nov., and proposal of a cable bacteria taxonomy following the rules of the SeqCode. Systematic and Applied Microbiology, 47(1), Article 126487. https://doi.org/10.1016/j.syapm.2024.126487

Fedosov, S., Nexø, E. & Würtz Heegaard, C. (2024). Kinetics of Cellular Cobalamin Uptake and Conversion: Comparison of Aquo/Hydroxocobalamin to Cyanocobalamin. Nutrients, 16(3), Article 378. https://doi.org/10.3390/nu16030378

Jensen, J. S., Kristensen, A.-K. D., Jespersen, E. A., Arias, C. A. & Riis, T. (2024). USING RIPARIAN WETLANDS FOR SURFACE WATER PURIFICATION: EFFECT ON NUTRIENT CONCENTRATION AND BIOLOGICAL RESPONSE. Abstract from 18th Annual DWF Water Research Conference, Copenhagen, Denmark.

Otzen, D. E., Møllebjerg, A., Hinge, M. & Pathak, G. S. (2024). Hvordan opnår vi en bæredygtig plastikkultur? Aktuel Naturvidenskab, 2024(1), 15-18.

Yuan, C., Tang, L., Lopdell, T., Petrov, V. A., Oget-Ebrad, C., Moreira, G. C. M., Duarte, J. L. G., Sartelet, A., Cheng, Z., Salavati, M., Wathes, D. C., Crowe, M. A., GplusE Consortium, Coppieters, W., Littlejohn, M., Charlier, C., Druet, T., Georges, M. & Takeda, H. (2023). An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants. Genome Research, 33(10), 1848-1864. https://doi.org/10.1101/gr.277947.123

Chen, Y., Atashi, H., Mota, R. R., Grelet, C., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023). Validating genomic prediction for nitrogen efficiency index and its composition traits of Holstein cows in early lactation. Journal of Animal Breeding and Genetics (Online), 140(6), 695-706. https://doi.org/10.1111/jbg.12819

Minero, G. A. S., Møllebjerg, A., Thiesen, C., Johansen, M. I., Jørgensen, N. P., Birkedal, V., Otzen, D. E. & Meyer, R. L. (2024). Extracellular G-quadruplexes and Z-DNA protect biofilms from DNase I, and G-quadruplexes form a DNAzyme with peroxidase activity. Nucleic Acids Research, 52(4), 1575-1590. https://doi.org/10.1093/nar/gkae034

Chen, Y., Atashi, H., Grelet, C., Mota, R. R., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023). Genome-wide association study and functional annotation analyses for nitrogen efficiency index and its composition traits in dairy cattle. Journal of Dairy Science, 106(5), 3397-3410. https://doi.org/10.3168/jds.2022-22351

Thomsen, M. M., Skouboe, M. K., Møhlenberg, M., Zhao, J., de Keukeleere, K., Heinz, J. L., Werner, M., Hollensen, A. K., Lønskov, J., Nielsen, I., Carter-Timofte, M. E., Zhang, B., Mikkelsen, J. G., Fisker, N., Paludan, S. R., Assing, K. & Mogensen, T. H. (2024). Impaired STING Activation Due to a Variant in the E3 Ubiquitin Ligase AMFR in a Patient with Severe VZV Infection and Hemophagocytic Lymphohistiocytosis. Journal of Clinical Immunology, 44(2), Article 56. https://doi.org/10.1007/s10875-024-01653-5

Kumar, S., Duflot, D., Jones, N. C., Hoffmann, S. V. & Limao-Vieira, P. (2024). Exploring the low-lying electronic states of C₄H₆OS isomers, dihydro-2(3H)-thiophenone and dihydro-3(2H)-thiophenone. Journal of Quantitative Spectroscopy & Radiative Transfer, 317, Article 108926. https://doi.org/10.1016/j.jqsrt.2024.108926

Bocková, J., Garcia, A. D., Jones, N. C., Hoffmann, S. V. & Meinert, C. (2024). Chiroptical properties of membrane glycerophospholipids and their chiral backbones. Chirality, 36(3), Article e23654. https://doi.org/10.1002/chir.23654

Pearce, C., Özdemir, K. S., Forchhammer Mathiasen, R., Detlef, H. & Olsen, J. (2023). The marine reservoir age of Greenland coastal waters. Geochronology, 5(2), 451-465. https://doi.org/10.5194/gchron-5-451-2023

Heinz, J. L., Swagemakers, S. M. A., von Hofsten, J., Helleberg, M., Thomsen, M. M., De Keukeleere, K., de Boer, J. H., Ilginis, T., Verjans, G. M. G. M., van Hagen, P. M., van der Spek, P. J. & Mogensen, T. H. (2023). Whole exome sequencing of patients with varicella-zoster virus and herpes simplex virus induced acute retinal necrosis reveals rare disease-associated genetic variants. Frontiers in Molecular Neuroscience, 16, Article 1253040. https://doi.org/10.3389/fnmol.2023.1253040

Jensen, F. (2024). Basis Set Superposition Errors Are Partly Basis Set Imbalances. Journal of Chemical Theory and Computation, 20(2), 767-774. https://doi.org/10.1021/acs.jctc.3c01156

Højlund, M. G., Zoccante, A. & Christiansen, O. (2024). Time-dependent coupled cluster with orthogonal adaptive basis functions: General formalism and application to the vibrational problem. The Journal of Chemical Physics, 160(2), Article 024105. https://doi.org/10.1063/5.0186000

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