Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Balat, V. & Danvy, O. (1997). Strong Normalization by Type-Directed Partial Evaluation and Run-Time Code Generation. B R I C S Report Series, (RS-97-43).

Bøttger, P. & Pedersen, L. (2011). Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life. B M C Biochemistry, 12(21). https://doi.org/10.1186/1471-2091-12-21

Daniel, D. & Danvy, O. (2000). Syntactic Accidents in Program Analysis: On the Impact of the CPS Transformation. B R I C S Report Series, (RS-00-15).

Danvy, O. & Lopez, P. E. M. (2003). Tagging, Encoding, and Jones Optimality. B R I C S Report Series, (RS-03-2).

Danvy, O. & Goldberg, M. (2002). There and Back Again. B R I C S Report Series, (RS-02-12).

Hatcliff, J. & Danvy, O. (1996). Thunks and the λ-calculus. B R I C S Report Series, (RS-96-19).

Hatcliff, J. & Danvy, O. (1997). Thunks and the λ-calculus. B R I C S Report Series, (RS-97-7).

Danvy, O. (1998). Type-Directed Partial Evaluation. BRICS Lecture Series, (LS-98-3).

Simonsen, M., Mailund, T. & Pedersen, C. N. S. (2011). Inference of Large Phylogenies Using Neighbour-Joining. Biomedical Engineering Systems and Technologies, 127(5), 334-344. https://doi.org/10.1007/978-3-642-18472-7_26

Cockburn, S. P., Negretti, A., Proukakis, N. P. & Henkel, C. (2011). Comparison between microscopic methods for finite-temperature Bose gases. Physical Review A, 83(4), 043619. https://doi.org/10.1103/PhysRevA.83.043619

Bouvin, N. O. & Schade, R. (1999). Integrating Temporal Media and Open Hypermedia on the World Wide Web. Computer Networks, 31(11-16), 1453-1465. https://doi.org/10.1016/S1389-1286(99)00038-9

Anderson, K. M. & Bouvin, N. O. (2000). Supporting project awareness on the WWW with the iScent framework. SIGGROUP Bulletin, 21(3), 16-20. https://doi.org/10.1145/605647.605650

Bouvin, N. O. (1998). Designing open hypermedia applets: experiences and prospects. In Proceedings of the ninth ACM conference on Hypertext and hypermedia: links, objects, time and space---structure in hypermedia systems (pp. 281-282). Association for Computing Machinery. https://doi.org/10.1145/276627.276659

Bouvin, N. O. (1999). Unifying strategies for Web augmentation. In J. Westbomke, U. K. Wiil, J. J. Leggett, K. Tochtermann & J. M. Haake (Eds.), Proceedings of the tenth ACM Conference on Hypertext and hypermedia: returning to our diverse roots (pp. 91-100). Association for Computing Machinery. https://doi.org/10.1145/294469.294493

Davis, H., Millard, D., Reich, S., Bouvin, N. O., Grønbæk, K., Nürnberg, P., Sloth, L., Wiil, U. K. & Anderson, K. M. (1999). Interoperability between hypermedia systems: the standardisation work of the OHSWG. In Proceedings of the tenth ACM Conference on Hypertext and hypermedia : returning to our diverse roots (pp. 201-202). Association for Computing Machinery. https://doi.org/10.1145/294469.294904

Bouvin, N. O. & Schade, R. (1999). Integrating Temporal Media and Open Hypermedia on the World Wide Web. In A. Mendelzon (Ed.), Proceedings of the 8th World Wide Web Conference (pp. 375-387). Elsevier.

Grønbæk, K., Sloth, L. & Bouvin, N. O. (2000). Open Hypermedia as User Controlled Meta Data for the Web. In Proceedings of the 9th World Wide Web Conference

Bouvin, N. O. (2000). Designing user interfaces for collaborative web-based open hypermedia. In Proceedings of the eleventh ACM on Hypertext and hypermedia (pp. 230-231). Association for Computing Machinery. https://doi.org/10.1145/336296.336389

Bouvin, N. O. (2000). Experiences with OHP and Issues for the Future. In Open Hypermedia Systems and Structural Computing: 6th International Workshop, OHS-6 2nd International Workshop, SC-2 San Antonio, Texas, USA, May 30 – June 3, 2000 Proceedings (pp. 191-206). Springer. https://doi.org/10.1007/3-540-39941-0_3

Christensen, B. G., Hansen, F. A. & Bouvin, N. O. (2003). Xspect: bridging open hypermedia and XLink. In Proceedings of the 12th international conference on World Wide Web (pp. 490-499). Association for Computing Machinery. https://doi.org/10.1145/775152.775222

Jensen, R. L., Arnbjerg, J., Birkedal, H. & Ogilby, P. R. (2011). Singlet Oxygen's Response to Protein Dynamics. Journal of the American Chemical Society, 133, 7166-7173. https://doi.org/10.1021/ja2010708

Ding, V. Z. Y., Dawson, S. S. H., Lau, L. W. Y., Lee, D. R., Galant, N. J., Setiadi, D. H., Jójárt, B., Szöri, M., Mucsi, Z., Viskolcz, B., Jensen, S. K. & Csizmadia, I. G. (2011). A computational study of glutathione and its fragments: N-acetylcisteinylglycine and γ-glutamylmethylamide. Chemical Physics Letters, 507, 168-173. https://doi.org/10.1016/j.cplett.2011.03.067

Bødker, S. & Bouvin, N. O. (1995). Deliverable 1.4.2: The EuroCODE conceptual framework: Preliminary. Department of Computer Science, Aarhus University.

Bouvin, N. O., Cole, W. & Rau, A. (1999). Hypertext'99 doctoral consortium report. S I G W E B Newsletter, 8(2), 48-50. https://doi.org/10.1145/951425.951433

Lühr, A. C., Hansen, D. C., Palmans, H. & Bassler, N. (2011). Accuracy of ion beam dosimetry: Stopping power ratios and fluence correction factors. Poster session presented at PTCOG 50, Philadelphia, PA, United States.

Bouvin, N. O. (1999). The Arakne Framework. Department of Computer Science, Aarhus University. CIT-Coconut No. 99-03.1Intermedia Working Papers No. 1

Bouvin, N. O. & Thomsen, K. S. (1999). User Guide to the COCONUT Arakne Application. Department of Computer Science, Aarhus University. CIT-Coconut No. 99-04Intermedia Working Papers No. 2

Bouvin, N. O. & Anderson, K. M. (2000). Enabling project awareness and intersubjectivity via hypermedia-enabled event trails. University of Colorado. Technical Report No. CU-CS-911-00

Kristensen, L. K. (2004). Initial orbit determination for distant objects. Astronomical Journal, 127(4), 2424-2435.

Østerby, O., Møller-Pedersen, K. & North, J. (1975). Summa Ratione Confectum. Archives Internationales d'Histoire des Sciences, 25(96), 73-81.

Kläning, U. K. & Østerby, O. (1976). Hydration and Ion Pairing of Maleinates, Malonates and Substituted Malonates in Aqueos Solution. Journal of the Chemical Society, Faraday Transactions, 72, 513-525.

Østerby, O. (1976). SOR with Non-property a Matrices. In J. Albrecht & L. Collatz (Eds.), Numerische Behandlung von Differentialgleichungen, ISNM 31 (pp. 181-190). Birkhäuser Verlag.

Østerby, O. (1976). Prime Decompositions with Minimum Sum. BIT Numerical Mathematics, 16, 451-458.

Østerby, O. (1979). Efficient Solution of Tridiagonal Linear Systems. The Computer Journal, 22(3), 283-285.

Roy, A., D'Annessa, I., Nielsen, C. J. F., Tordrup, D. P., Laursen, R. R., Andersen, F. F., Desideri, A. & Knudsen, B. R. (2011). Peptide Inhibition of Topoisomerase IB from Plasmodium falciparum. Molecular Biology International, 854626. https://doi.org/10.4061/2011/854626

Sand, J. & Østerby, O. (1979). Regions of Absolute Stability. Department of Computer Science, Aarhus University. DAIMI PB No. 102

Zlatev, Z. & Østerby, O. (1980). Absolute stability properties of the explicit linear 3-step formulae. Department of Computer Science, Aarhus University. DAIMI PB No. 124

Gear, C. W. & Østerby, O. (1984). Solving Ordinary Differential Equations with Discontinuities. A C M Transactions on Mathematical Software, 10(1), 23-44. https://doi.org/10.1145/356068.356071

Damkjær, M., Brøndum, E. T., Grøndahl, C., Bertelsen, M. F., Hasenkam, J. M., Wang, T., Candy, G. & Bie, P. (2011). Low blood volume in the giraffe (Giraffa camelopardalis). Poster session presented at Experimental Biology , Washington DC, United States.

Hørlyck, A., Petersen, K. K., Sloth, E., Baandrup, U. T., Bertelsen, M. F., Brøndum, E. T., Candy, G., Grøndahl, C., Hasenkam, J. M., Secher, N. H., Wang, T., Østergaard, K. H. & Aalkjær, C. (2011). Function of a sphincter-like structure in the median artery of the giraffe foreleg. Poster session presented at Experimental Biology, Washington DC, United States.

Berg, P., Røy, H. & Wiberg, P. L. (2007). Eddy correlation flux measurements: The sediment surface area that contributes to the flux. Limnology and Oceanography, 52(4), 1672-1684.

Omoregie, E. O., Mastalerz, V., de lange, G., Straub, K. L., Kappler, A., Røy, H., Stadnitskaia, A., Foucher, J.-P. & Boetius, A. (2008). Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren mud volcano (Nile Deep Sea fan, Eastern Mediterranean). Applied and Environmental Microbiology, 74(10), 3198-3215. https://doi.org/10.1128/AEM.01751-07

Billerbeck, M., Røy, H., Bosselmann, K. & Huettel, M. (2007). Benthic photosynthesis in submerged Wadden Sea intertidal flats. Estuarine, Coastal and Shelf Science, 71(3-4), 704-716. https://doi.org/10.1016/j.ecss.2006.09.019

Cook, P. L. M. & Røy, H. (2006). Advective relief of CO2 limitation in microphytobenthos in highly productive sandy sediments. Limnology and Oceanography, 51(4), 1594-1601.

Wild, C., Røy, H. & Huettel, M. (2005). Role of pelletization in mineralization of fine-grained coastal sediments. Marine Ecology Progress Series, 291, 23-33.

Røy, H., Huettel, M. & Jørgensen, BB. (2005). The influence of topography on the functional exchange surface of marine soft sediments, assessed from sediment topography measured in situ. Limnology and Oceanography, 50(1), 106-112.

Vopel, K., Thistle, D., Ott, J., Bright, M. & Røy, H. (2005). Wave-induced H2S flux sustains a chemoautotrophic symbiosis. Limnology and Oceanography, 50(1), 128-133.

Røy, H., Huettel, M. & Jørgensen, BB. (2004). Transmission of oxygen concentration fluctuations through the diffusive boundary layer overlying aquatic sediments. Limnology and Oceanography, 49(3), 686-692.

Berg, P., Røy, H., Janssen, F., Meyer, V., Jørgensen, BB., Huettel, M. & de Beer, D. (2003). Oxygen uptake by aquatic sediments measured with a novel non-invasive eddy-correlation technique. Marine Ecology Progress Series, 261, 75-83.

Østerby, O. (1985). Step Change Strategies for Multistep Methods. Department of Computer Science, Aarhus University. DAIMI PB No. 196

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