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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Magnani, M., Montesi, D. & Rossi, L. (2012). Conversation Retrieval from Microblogging Sites. Information Retrieval, 15(3-4), 354-372. https://doi.org/10.1007/s10791-012-9189-9

Magnani, M., Montesi, D. & Rossi, L. (2013). Factors enabling information propagation in a Social Network Site. In T. Özyer , J. Rokne , G. Wagner & A. H. P. Reuser (Eds.), The Influence of Technology on Social Network Analysis and Mining (pp. 411-426 ). Springer. https://doi.org/10.1007/978-3-7091-1346-2_18

Lambertini, M., Magnani, M., Marzolla, M., Montesi, D. & Paolino, C. (2014). Large-Scale Social Network Analysis. In A. Gkoulalas-Divanis & A. Labbi (Eds.), Large scale data analytics (pp. 155-187). Springer. https://doi.org/10.1007/978-1-4614-9242-9

Johannesson, T. G., Søgaard, O. S., Tolstrup, M., Petersen, M. S., Jensen, J. M. B., Østergaard, L. J. & Erikstrup, C. (2012). The impact of B-cell perturbations on pneumococcal conjugate vaccine response in HIV-infected adults. PLoS One, 7(7), e42307. https://doi.org/10.1371/journal.pone.0042307

Buylaert, J.-P., Jain, M., Murray, A. S., Thomsen, K. J. & Lapp, T. (2012). IR-RF dating of sand-sized K-feldspar extracts: A test of accuracy. Radiation Measurements, 47(9), 759-765. https://doi.org/10.1016/j.radmeas.2012.06.021

Liu, J., Murray, A. S., Jain, M., Buylaert, J.-P., Lu, Y. & Chen, J. (2012). Developing a SAR TT-OSL protocol for volcanically-heated aeolian quartz from Datong (China). Quaternary Geochronology, 10, 308-313. https://doi.org/10.1016/j.quageo.2012.02.008

Schatz, A.-K., Buylaert, J.-P., Murray, A. S., Stevens, T. & Scholten, T. (2012). Establishing a luminescence chronology for a palaeosol-loess profile at Tokaj (Hungary): A comparison of quartz OSL and polymineral IRSL signals. Quaternary Geochronology, 10, 68-74. https://doi.org/10.1016/j.quageo.2012.02.018

Sugisaki, S., Buylaert, J.-P., Murray, A. S., Harada, N., Kimoto, K., Okazaki, Y., Sakamoto, T., Iijima, K., Tsukamoto, S., Miura, H. & Nogi, Y. (2012). High resolution optically stimulated luminescence dating of a sediment core from the southwestern Sea of Okhotsk. Geochemistry, Geophysics, Geosystems, 13(5, Q0AA22). https://doi.org/10.1029/2011GC004029

Thiel, C., Buylaert, J.-P., Murray, A. S., Elmejdoub, N. & Jedoui, Y. (2012). A comparison of TT-OSL and post-IR IRSL dating of coastal deposits on Cap Bon peninsula, north-eastern Tunisia. Quaternary Geochronology, 10, 209-217. https://doi.org/10.1016/j.quageo.2012.03.010

Lapp, T., Jain, M., Thomsen, K. J., Murray, A. S. & Buylaert, J.-P. (2012). New luminescence measurement facilities in retrospective dosimetry. Radiation Measurements, 47(9), 803-808. https://doi.org/10.1016/j.radmeas.2012.02.006

Murray, A. S., Thomsen, K. J., Masuda, N., Buylaert, J.-P. & Jain, M. (2012). Identifying well-bleached quartz using the different bleaching rates of quartz and feldspar luminescence signals. Radiation Measurements, 47(9), 688-695. https://doi.org/10.1016/j.radmeas.2012.05.006

Dasgupta, I., Sanglas, L., Enghild, J. J. & Lindberg, I. (2012). The Neuroendocrine Protein 7B2 Is Intrinsically Disordered. Biochemistry, 51(38), 7456–7464. https://doi.org/10.1021/bi300871k

Sztukowska, M., Veillard, F., Potempa, B., Bogyo, M., Enghild, J. J., Thøgersen, I. B., Nguyen, K.-A. & Potempa, J. (2012). Disruption of gingipain oligomerization into non-covalent cell-surface attached complexes. World Journal of Biological Chemistry, 393(9), 971-977. https://doi.org/10.1515/hsz-2012-0175

Manka, S. W., Carafoli, F., Visse, R., Bihan, D., Raynal, N., Farndale, R. W., Murphy, G., Enghild, J. J., Hohenester, E. & Nagase, H. (2012). Structural insights into triple-helical collagen cleavage by matrix metalloproteinase 1. Proceedings of the National Academy of Sciences (PNAS), 109(31), 12461-12466. https://doi.org/10.1073/pnas.1204991109

Nikolajsen, C. L., Scavenius, C. & Enghild, J. J. (2012). Human complement C3 is a Substrate for Transglutaminases. A Functional Link between Non-Protease-Based Members of the Coagulation and Complement Cascades. Biochemistry, 51(23), 4735-4742. https://doi.org/10.1021/bi3004022

Scavenius, C., Ghodke, S., Otzen, D. E. & Enghild, J. J. (2011). Hydrogen exchange mass spectrometry as an analytical tool for the analysis of amyloid fibrillogenesis. International Journal of Mass Spectrometry, 302(1-3), 167-173. https://doi.org/10.1016/j.ijms.2010.10.001

Søgaard, D. H., Kristensen, M., Rysgaard, S., Glud, R. N., Hansen, P. J. & Hilligsøe, K. M. (2010). Autotrophic and heterotrophic activity in Arctic first-year sea ice: Seasonal study from Malene Bight, SW Greenland. Marine Ecology Progress Series, 419, 31-45. https://doi.org/10.3354/meps08845

Madsen, J. L. H., Andersen, T. L., Santamaria, S., Nagase, H., Enghild, J. J. & Skrydstrup, T. (2012). Synthesis and evaluation of silanediols as highly selective uncompetitive inhibitors of human neutrophil elastase. Journal of Medicinal Chemistry, 55(17), 7900-7908. https://doi.org/10.1021/jm301000k

Guo, C., Ma, M., Yang, B., Jensen, C. S. & Kaul, M. (2012). EcoMark: Evaluating Models of Vehicular Environmental Impact. In I. Cruz & C. Knoblock (Eds.), Proceedings of the 20th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems: ACM SIGSPATIAL GIS 2012 (pp. 269-278). Association for Computing Machinery. https://doi.org/10.1145/2424321.2424356

Albo, M. J., Toft, S. & Bilde, T. (2012). Female spiders ignore condition-dependent information from nuptial gift wrapping when choosing mates. Animal Behaviour, 84(4), 907-912. https://doi.org/10.1016/j.anbehav.2012.07.014

Gustafsson, M. H. G. (2012). Botanikdagarna i Järvsö 2012 - turen till Hornslandet. Växter i Hälsingland och Gästrikland, 3, 41-43.

Lubas, M. S., Chlebowski , A., Dziembowski , A. & Jensen, T. H. (2012). Biochemistry and Function of the RNA Exosomes. In G. F. Chanfreau & F. Tamanoi (Eds.), The Enzymes: Eukaryotic RNases and their Partners in RNA Degradation and Biogenesis, Part A (Vol. 31, pp. 1-30). Elsevier. https://doi.org/10.1016/B978-0-12-404740-2.00001-X

Schmid, M., Poulsen, M. B., Olszewski, P., Pelecano, V., Saguez, C., Gupta, I., Steinmetz, L. M., Moore, C. & Jensen, T. H. (2012). Rrp6p controls mRNA poly(a) tail length and its decoration with poly(a) binding proteins. Molecular Cell, 47(2), 267-280.

Mühlemann, O. & Jensen, T. H. (2012). mRNP quality control goes regulatory. Trends in Genetics, 28(2), 70-77. https://doi.org/10.1016/j.tig.2011.11.001

Kallehauge, T. B., Robert, M.-C., Bertrand, E. & Jensen, T. H. (2012). Nuclear retention prevents premature cytoplasmic appearance of mRNA. Molecular Cell, 48(1), 145-152. https://doi.org/10.1016/j.molcel.2012.07.022

Andersen, P. K., Lykke-Andersen, S. & Jensen, T. H. (2012). Promoter proximal polyadenylation sites reduce transcription activity. Genes & Development, 26, 2169-2179. https://doi.org/10.1101/gad.189126.112

Schmid, M. & Jensen, T. H. (2013). Transcription-associated quality control of mRNP. BBA General Subjects, 1829(1), 158-168. https://doi.org/10.1016/j.bbagrm.2012.08.012

Pedersen, M. Ø., Mikkelsen, K., Behrens, M. A., Pedersen, J. S., Enghild, J. J., Skrydstrup, T., Malmendal, A. & Nielsen, N. C. (2010). NMR reveals two-step association of Congo Red to amyloid β in low-molecular-weight aggregates. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 114(48), 16003-16010. https://doi.org/10.1021/jp108035y

Chen, D., Liu, B., Gao, F. & Dong, M. (2012). Migration of point defects and a defect pair in zinc oxide using the dimer method. Journal of Materials Research, 27(17), 2241-2248. https://doi.org/10.1557/jmr.2012.153

Zhang, S., Cho, S.-J., Busuttil, K., Wang, C., Besenbacher, F. & Dong, M. (2012). Scanning ion conductance microscopy studies of amyloid fibrils at nanoscale. Nanoscale, 4(10), 3105-10. https://doi.org/10.1039/c2nr12049f

Li, Y., Guo, L., Liu, B., Mamdouh, W., Zhang, S. & Dong, M. (2012). Collagen coated tantalum substrate for cell proliferation. Colloids and Surfaces B: Biointerfaces, 95, 10-15. https://doi.org/10.1016/j.colsurfb.2012.01.009

Chen, M., Liu, Q., Liu, P., Wang, C., Li, Y.-M., Dong, M., Besenbacher, F., Busuttil, K. & Zhang, S. (2012). An investigation into the formation of annular aggregates of human islet amyloid polypeptide on tantalum oxide surfaces. Chemistry: A European Journal, 18(9), 2493-7. https://doi.org/10.1002/chem.201102215

Han, Q., Yang, R., Li, J., Liang, W., Zhang, Y., Wang, C., Dong, M. & Besenbacher, F. (2012). Enhancement of biological activities of nanostructured hydrophobic drug species. Nanoscale, 4(6), 2078-82. https://doi.org/10.1039/c2nr12013e

Wang, C., Yang, A., Li, X., Li, D., Zhang, M., Du, H., Li, C., Guo, Y., Mao, X., Yang, Y., Wang, C., Dong, M. & Besenbacher, F. (2012). Observation of molecular inhibition and binding structures of amyloid peptides. Nanoscale, 4(6), 1895-909. https://doi.org/10.1039/c2nr11508e

Majer, M., Svenning, J.-C. & Bilde, T. (2012). Global analysis of social spiders' species richness.

Feketeová, L., Bassler, N., Sørensen, B. S., Horsman, M. R., White, J. & O'Hair, R. A. J. (2012). Radiosensitizers investigated using electrospray ionization mass spectrometry. Poster session presented at International Mass Spectrometry Conference, Kyoto, Japan.

Abdallah, M., Pearce, B. D., Larsen, N., Greaves-Lord, K., Nørgaard-Pedersen, B., Hougaard, D. M., Mortensen, E. L. & Grove, J. (2012). Amniotic Fluid MMP-9 and Neurotrophins in Autism Spectrum Disorders: An Exploratory Study. Autism Research, 5(6), 428-33. https://doi.org/10.1002/aur.1254

Jensen, K. M. Ø., Bozin, E., Malliakas, C., Stone, M., Lumsden, M., Kanatzidis, M., Shapiro, S. & Billinge, S. (2012). Lattice dynamics reveals a local symmetry breaking in the emergent dipole phase of PbTe. Physical Review B Condensed Matter, 86(8), 085313-1 til 085313-7 . https://doi.org/10.1103/PhysRevB.86.085313

Henneberg, A., Sorrell, B. K. & Brix, H. (2012). Controlling factors for transport of methane through Juncus effuses . Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Eller, F. P. & Brix, H. (2012). Elevated CO₂ alters the phenotypic plasticity of Phragmites australis with respect to temperature and nutrient availability. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Lambertini, C., Loc, N. X., Achenbach, L. & Brix, H. (2012). The Phragmites world: phylogeography and ecophysiology within a cosmopolitan polyploid species complex. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Piwpuan, N. & Brix, H. (2012). Effects of different NH₄⁺ concentrations on growth and some physiological responses of Cyperus laevigatus. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Achenbach, L. & Brix, H. (2012). Response to Increasing Salt Stress of Genetically Different Phragmites australis Clones. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Zhai, X. & Brix, H. (2012). Plant allelopathic interactions by root exudates from Phragmites australis: toxic effect of gallic acid on seed germination and growth. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Guo, W., Lambertini, C., Li, X. & Brix, H. (2012). Potential distribution of the cryptic, invasive Haplotype M of common reed Phragmites australis in North America under present and future climate change. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Nivala, J. A., Headley, T., Brix, H., Kassa, K., Wallace, S., Afferden, M. V. & Müller, R. (2012). The role of plants and design in subsurface flow treatment wetland performance. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Stephansen, D. A., Nielsen, A. H., Hvitved-Jacobsen, T., Arias, C. A., Brix, H. & Vollertsen, J. (2012). Allocation of metal concentrations in sediments and biota from stormwater ponds and rural, shallow lakes. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Arias, C. A., Istenic, D., Nielsen, A. H., Wium-Andersen, T. & Vollertsen, J. (2012). A new Approach to Run Off pollution treatment: Planted wetponds. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Loc, N. X., Headley, T. R., Piwpuan, N., Zhai, X. & Brix, H. (2012). Screening plant species for use in constructed wetland systems in arid regions: water use efficiency. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Arias, C. A., Matamoros, V., Loc, N. X. & Brix, H. (2012). Emerging contaminants in a restored wetland system: Occurrence and attenuation. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

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Anne Kirstine Mehlsen