Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Povlsen, K. & Kristiansen, S. M. (2023). Relationship between Fields, banks and farmstead at an early Iron Age site in Northern Denmark. Journal of Archaeological Science: Reports, 49, Article 104042. https://doi.org/10.1016/j.jasrep.2023.104042

Christensen, K., Nielsen, M. S. & Podolskij, M. (2023). High-dimensional estimation of quadratic variation based on penalized realized variance. Statistical Inference for Stochastic Processes, 26(2), 331-359. https://doi.org/10.1007/s11203-022-09282-8

Duncan, A. L. & Pezeshkian, W. (2023). Mesoscale simulations: An indispensable approach to understand biomembranes. Biophysical Journal, 122(11), 1883-1889. https://doi.org/10.1016/j.bpj.2023.02.017

Funch, P., Kealy, R. A., Goldstein, J., Brewer, J. R., Solovyeva, V. & Riisgård, H. U. (2023). Fate of microplastic captured in the marine demosponge Halichondria panicea. https://doi.org/10.2139/ssrn.4467283

Menezes, R. F., Svenning, J. C., Fu, H., De Meester, L., Lauridsen, T. L., Søndergaard, M., Conde-Porcuna, J. M. & Jeppesen, E. (2023). Fish Beta Diversity Patterns across Environmental Gradients in 63 European Shallow Lakes: Effects of Turbidity, Nutrient Enrichment, and Exotic Species. Water, 15(10), Article 1831. https://doi.org/10.3390/w15101831

Olsen, J., Daróczi, T. T. & Kanstrup, M. (2023). Comparing methods for CO₂ purification of cremated bone samples. Radiocarbon, 65(3), 809-817. https://doi.org/10.1017/RDC.2023.34

Liu, J., McRae, E. K. S., Zhang, M., Geary, C., Andersen, E. S. & Ren, G. (2023). Tertiary structure of single-instant RNA molecule reveals folding landscape. https://doi.org/10.1101/2023.05.19.541511

Wu, J., Luo, Q., Zhong, N., Goodarzi, F., Suchý, V., Sanei, H., Skovsted, C. B., Li, M., Zhang, Y., Li, D., Wu, J. & Song, D. (2023). Chemical structure and thermal maturation of the vitrinite-like maceral in the Lower Paleozoic shales: Insights from Raman spectroscopy of artificial pyrolysis residues. Journal of Analytical and Applied Pyrolysis, 172, Article 106024. https://doi.org/10.1016/j.jaap.2023.106024

Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D., Rivas-González, I., Wang, S., Wang, Y. M., Chen, W. ... Wu, D. D. (2023). Phylogenomic analyses provide insights into primate evolution. Science (New York, N.Y.), 380(6648), 913-924. https://doi.org/10.1126/science.abn6919

Griffiths, M. P., Grombacher, D., Kass, M. A., Vang, M., Liu, L. & Larsen, J. J. (2023). A surface NMR forward in a dot product. Geophysical Journal International, 234(3), 2284-2290. https://doi.org/10.1093/gji/ggad203

Scholl, C. L., Holmstrup, M., Graham, L. A. & Davies, P. L. (2023). Polyproline type II helical antifreeze proteins are widespread in Collembola and likely originated over 400 million years ago in the Ordovician Period. Scientific Reports, 13(1), Article 8880. https://doi.org/10.1038/s41598-023-35983-y

Marini, V., Nikulenkov, F., Samadder, P., Juul, S., Knudsen, B. R. & Krejci, L. (2023). MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links. BMC Biology, 21(1), Article 110. https://doi.org/10.1186/s12915-023-01614-1

Rivas-González, I., Rousselle, M., Li, F., Zhou, L., Dutheil, J. Y., Munch, K., Shao, Y., Wu, D., Schierup, M. H. & Zhang, G. (2023). Pervasive incomplete lineage sorting illuminates speciation and selection in primates. Science, 380(6648), eabn4409. Article eabn4409. https://doi.org/10.1126/science.abn4409

Roelsgaard, M., Kløve, M., Christensen, R., Bertelsen, A. D., Broge, N. L. N., Kantor, I., Sørensen, D. R., Dippel, A.-C., Banerjee, S., Zimmermann, M. V., Glaevecke, P., Gutowski, O., Jørgensen, M. R. V. & Iversen, B. B. (2023). A reactor for time-resolved X-ray studies of nucleation and growth during solvothermal synthesis. Journal of Applied Crystallography, 56(3), 581-588. https://doi.org/10.1107/S1600576723002339

Kong, J., Manjón-Sanz, A., Liu, J., Marlton, F. P., Lo, T. W., Lei, D., Jørgensen, M. R. V. & Pramanick, A. (2023). Scaling behavior of order parameters for the hybrid improper ferroelectric (Ca, Sr)₃Ti₂O₇. Physical Review B, 107(22), Article 224103. https://doi.org/10.1103/PhysRevB.107.224103

Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023). The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.), 380(6648), Article abn8197. https://doi.org/10.1126/science.abn8197

Bernard, C., Santos, G. S., Deere, J. A., Rodriguez-Caro, R., Capdevila, P., Kusch, E., Gascoigne, S. J. L., Jackson, J. & Salguero-Gómez, R. (2023). MOSAIC - A Unified Trait Database to Complement Structured Population Models. Scientific Data, 10(1), Article 335. https://doi.org/10.1038/s41597-023-02070-w

Baumann, C., Hussain, S. T., Roblíčková, M., Riede, F., Mannino, M. & Bocherens, H. (2023). Evidence for hunter-gatherer impacts on raven diet and ecology in the Gravettian of Southern Moravia. Nature Ecology & Evolution, 7(8), 1302-1314. https://doi.org/10.1038/s41559-023-02107-8

Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J. ... Rogers, J. (2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Science (New York, N.Y.), 380(6648), Article eabn8153. https://doi.org/10.1126/science.abn8153

Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L. ... Wu, D. D. (2023). Comparative genomics reveals the hybrid origin of a macaque group. Science Advances, 9(22), Article eadd3580. https://doi.org/10.1126/sciadv.add3580

Alstrup, A. K. O., Busk, M., Dittrich, A., Hansen, K., Wang, T., Damkjær, M., Andersen, J. & Lauridsen, H. (2023). Special challenges in PET imaging of ectothermic vertebrates. Seminars in Nuclear Medicine, 53(5), 577-585. https://doi.org/10.1053/j.semnuclmed.2023.06.006

Lunding, M. S., Grønbæk, J. E., Grymer, N., Wells, T., Houben, S. & Petersen, M. G. (2023). Reality and Beyond: Proxemics as a Lens for Designing Handheld Collaborative Augmented Reality. Proceedings of the ACM on Human-Computer Interaction, 7(ISS), 21-40. Article 427. https://doi.org/10.1145/3626463

Lecoq, P., Gonzalez, A. J., Auffray, E., Konstantinou, G., Nuyts, J., Prior, J. O., Martinez Turtos, R. & Varela, J. (2023). Fast Timing in Medical Imaging. IEEE Transactions on Radiation and Plasma Medical Sciences, 7(5), 429-452. https://doi.org/10.1109/TRPMS.2023.3259464

Sørensen, E. S. & Christensen, B. (2023). Milk Osteopontin and Human Health. Nutrients, 15(11), Article 2423. https://doi.org/10.3390/nu15112423

Kruk, M. B., Vibel, T., Arlt, J., Kulik, P., Pawłowski, K. & Rzążewski, K. (2023). Fock State Sampling Method - Characteristic Temperature of Maximal Fluctuations for Interacting Bosons in Box Potentials. Acta Physica Polonica A, 143(6), S171-S178. https://doi.org/10.12693/APhysPolA.143.S171

Lautrup, S., Myrup Holst, C., Yde, A., Asmussen, S., Thinggaard, V., Larsen, K., Laursen, L. S., Richner, M., Vaegter, C. B., Prieto, G. A., Berchtold, N., Cotman, C. W. & Stevnsner, T. (2023). The role of aging and brain-derived neurotrophic factor signaling in expression of base excision repair genes in the human brain. Aging Cell, 22(9), Article e13905. https://doi.org/10.1111/acel.13905

Eme, L., Tamarit, D., Eva, C., Stairs, C. W., De Anda, V., Schön, M. E., Seitz , K. W., Dombrowski, N., Levis, W. H., Homa, F., Saw, J. H., Lombard, J., Nunoura, T., Li, W.-J., Hua, Z.-S., Chen, L.-X., Banfield, J., St John, E., Reysenbach, A.-L. ... Ettema, T. JG. (2023). Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes. Nature, 618(7967), 992-999. https://doi.org/10.1038/s41586-023-06186-2

Liu, L., Auken, E., Domenzain, D., Maurya, P. K., Bording, T. S., Bjerre, B., Vela, I. & Christiansen, A. V. (2022). A 4D Cross-Borehole Direct Current Resistivity System for Monitoring In-Situ Groundwater Remediation. In 28th European Meeting of Environmental and Engineering Geophysics, Held at the Near Surface Geoscience Conference and Exhibition 2022, NSG 2022 European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.202220117

Sønderby, T. V., Louros, N. N., Khodaparast, L., Khodaparast, L., Madsen, D. J., Olsen, W. P., Moonen, N., Nagaraj, M., Sereikaite, V., Strømgaard, K., Rousseau, F., Schymkowitz, J. & Otzen, D. E. (2023). Sequence-targeted Peptides Divert Functional Bacterial Amyloid Towards Destabilized Aggregates and Reduce Biofilm Formation. Journal of Molecular Biology, 435(11), 168039. Article 168039. https://doi.org/10.1016/j.jmb.2023.168039

Kristiansen, S. M. & Christiansen, A. V. (2023). Professor og lektor: Underdimensionering af klima- og miljøuddannelser koster samfundet dyrt. Altinget. https://www.altinget.dk/miljoe/artikel/professor-og-lektor-lav-dimensionering-paa-klimauddannelser-koster-samfundet-dyrt

Kristiansen, S. M. (2023). Jorden, jordbunden – og alt det andet. Geografisk Orientering, 2023(2), 10-17. Article 1. http://geografforbundet.dk/geografisk-orientering/geografisk-orientering-22023/

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology Spectrum, 11(4), Article e0062523. https://doi.org/10.1128/spectrum.00625-23

Nilsson, I.-E. F., Hoffmann, C. C. & Kristiansen, S. M. (2023). Minivådområder tilbageholder tungmetaller. Vand & Jord, 2023(2), 62-64. http://vand-og-jord.dk/seneste/

Jacobsen, M. W., Nygaard, R., Hansen, B. K., Broberg, M., Hansen, M. M. & Nielsen, E. E. (2023). Observing the Arctic: A comparison of environmental DNA (eDNA) and electrofishing for monitoring Arctic char and Atlantic salmon. Environmental DNA, 5, 782-795. https://doi.org/10.1002/edn3.442

Williams, C. J. A. & Bertelsen, M. F. (2023). Anesthesia and analgesia in reptiles. In M. C. Dyson, P. Jirkof, J. Lofgren, E. A. Nunamaker & D. Pang (Eds.), Anesthesia and Analgesia in Laboratory Animals (3 ed., pp. 599-627). Academic Press. https://doi.org/10.1016/B978-0-12-822215-7.00009-3

Williams, C. J. A. & Mads, B. (2023). Anesthesia and analgesia in amphibians. In M. C. Dyson, P. Jirkof, J. Lofgren, E. A. Nunamaker & D. Pang (Eds.), Anesthesia and Analgesia in Laboratory Animals (3 ed., pp. 629-646). Academic Press. https://doi.org/10.1016/B978-0-12-822215-7.00006-8

Bundgaard, A., Gruszczyk, A. V., Prag, H. A., Williams, C., McIntyre, A., Ruhr, I. M., James, A. M., Galli, G. L. J., Murphy, M. P. & Fago, A. (2023). Low production of mitochondrial reactive oxygen species after anoxia and reoxygenation in turtle hearts. Journal of Experimental Biology, 226(9), Article jeb245516. https://doi.org/10.1242/jeb.245516

Thomsen, A. H., Leth, P. M., Hougen, H. P. & Villesen, P. (2023). Intimate partner homicides in Denmark 1992-2016. Forensic Science International: Synergy, 6, Article 100337. https://doi.org/10.1016/j.fsisyn.2023.100337

Aranha, D. F., Battagliola, M. & Roy, L. D. (2024). Faster coercion-resistant e-voting by encrypted sorting. In E-Vote-ID 2023 (pp. 53-70). Gesellschaft fur Informatik (GI). https://doi.org/10.18420/e-vote-id2023_03

Aranha, D. F. & Medwed, M. (2023). IACR Transactions on Cryptographic Hardware and Embedded Systems. Ruhr Universität Bochum. IACR Transactions of Cryptographic Hardware and Embedded Systems Vol. 2023 No. 1-4 https://tches.iacr.org/index.php/TCHES/issue/view/312

Bødker, S., Borowski, M., Griggio, C. F., Korsgaard, H. & Tchernavskij, P. (2023). CIO Work Package 1 Summary: Theoretical Concepts.

Østergaard, M., Naver, E. B., Kaestner, A., Willendrup, P. K., Brüel, A., Sørensen, H. O., Thomsen, J. S., Schmidt, S., Poulsen, H. F., Theil Kuhn, L. & Birkedal, H. (2023). Polychromatic neutron phase-contrast imaging of weakly absorbing samples enabled by phase retrieval. Journal of Applied Crystallography, 56(Part 3), 673-682. https://doi.org/10.1107/S1600576723003011

Boxy, P., Nykjær, A. & Kisiswa, L. (2023). Building better brains: the pleiotropic function of neurotrophic factors in postnatal cerebellar development. Frontiers in Molecular Neuroscience, 16, Article 1181397. https://doi.org/10.3389/fnmol.2023.1181397

Bødker, S., Borowski, M., Tchernavskij, P., Hoggan, E. & Korsgaard, H. (2023). CIO Work Package 3 Summary: Technical Requirements.

Jensen, M. L., Martinez Turtos, R., Muren, L., Julsgaard, B. & Balling, P. (2023). 3D optically-stimulated-luminescence-based dosimetry using LYSO:Ce scintillators. Journal of Physics: Conference Series, 2630, Article 012019. https://doi.org/10.1088/1742-6596/2630/1/012019

Jensen, M. L., Julsgaard, B., Martinez Turtos, R., Skyt, P. S., Jensen, M. B., Muren, L. & Balling, P. (2024). High-resolution three-dimensional dosimetry in clinically relevant volumes utilizing optically stimulated luminescence. Medical Physics, 51(3), 2200-2209. https://doi.org/10.1002/mp.16796

Kingo, T. & Aranha, D. F. (2023). User-centric security analysis of MitID: the Danish passwordless digital identity solution. Computers & Security, 132, Article 103376. https://doi.org/10.1016/j.cose.2023.103376

Kaiser, M., Foldager, L. & Herskin, M. S. (2023). Height relative to body weight in nursery pigs. Journal of Animal Science, 101, 1-9. Article skad123. https://doi.org/10.1093/jas/skad123

Sturm, J. A., McClure, M. K., Law, C. J., Harsono, D., Bergner, J. B., Dartois, E., Drozdovskaya, M. N., Ioppolo, S., Öberg, K. I., Palumbo, M. E., Pendleton, Y. J., Rocha, W. R. M., Terada, H. & Urso, R. G. (2023). The edge-on protoplanetary disk HH 48 NE I. Modeling the geometry and stellar parameters.

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