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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Sumanon, P., Eiserhardt, W. L., Balslev, H. & Utteridge, T. M. A. (2020). Maesa brevipedicellata (Primulaceae), a new species from Papua New Guinea. Blumea: Journal of Plant Taxonomy and Plant Geography, 65(1), 83-85. https://doi.org/10.3767/blumea.2020.65.01.10

Palmer, M. H., Hoffmann, S. V., Jones, N. C., Coreno, M., De Simone, M., Grazioli, C. & Aitken, R. A. (2020). The vacuum ultraviolet spectrum of cyclohepta-1, 3, 5-triene: analysis of the singlet and triplet excited states by ab initio and density functional methods. The Journal of Chemical Physics, 153(5), Article 054301. https://doi.org/10.1063/5.0011088

Ioppolo, S., Kanuchová, Z., James, R. L., Dawes, A., Jones, N. C., Hoffmann, S. V., Mason, N. J. & Strazzulla, G. (2020). Vacuum ultraviolet photoabsorption spectroscopy of space related ices: 1 keV electron irradiation of nitrogen- and oxygen-rich ices. Astronomy & Astrophysics (A&A), 641, Article A154. https://doi.org/10.1051/0004-6361/201935477

Javed, I., Zhang, Z., Adamcik, J., Andrikopoulos, N., Li, Y., Otzen, D. E., Lin, S., Mezzenga, R., Davis, T. P., Ding, F. & Ke, P. C. (2020). Accelerated Amyloid Beta Pathogenesis by Bacterial Amyloid FapC. Advanced Science, 7(18), Article 2001299. https://doi.org/10.1002/advs.202001299

Jennings, A. E., Seidenkrantz, M.-S. & Knudsen, K. L. (2020). Glomulina oculus, New Calcareous Foraminiferal Species from the High Arctic: A Potential Indicator of a Nearby Marine-Terminating Glacier. Journal of Foraminiferal Research, 50(2), 219-234. https://doi.org/10.2113/gsjfr.52.2.219

Lucani Rötter, D. E., Nielsen, L., Orlandi, C., Pagnin, E. & Vestergaard, R. (2020). Secure generalized deduplication via multi-key revealing encryption. In C. Galdi & V. Kolesnikov (Eds.), Security and Cryptography for Networks (pp. 298-318). Springer. https://doi.org/10.1007/978-3-030-57990-6_15

Shukla, P., Ansari, K. U., Gao, C., Vaidya, S., Tripathi, S., Kumar, P., Butcher, R. J., Overgaard, J. & Shanmugam, M. (2020). Influence of anion induced geometry change in Zn(II) on the magnetization relaxation dynamics of Dy(III) in Zn–Dy–Zn complexes. Dalton Transactions , 49(30), 10580-10593. https://doi.org/10.1039/d0dt00949k

Capelli, R., Lyu, W., Bolnykh, V., Meloni, S., Olsen, J. M. H., Rothlisberger, U., Parrinello, M. & Carloni, P. (2020). Accuracy of Molecular Simulation-Based Predictions of k_off Values: A Metadynamics Study. The Journal of Physical Chemistry Letters, 11(15), 6373-6381. https://doi.org/10.1101/2020.03.30.015396, https://doi.org/10.1021/acs.jpclett.0c00999

Rajkumar, A. P., Qvist, P., Donskov, J. G., Lazarus, R., Pallesen, J., Nava, N., Winther, G., Liebenberg, N., Cour, S. H. L., Paternoster, V., Fryland, T., Palmfeldt, J., Fejgin, K., Mørk, A., Nyegaard, M., Pakkenberg, B., Didriksen, M., Nyengaard, J. R., Wegener, G. ... Børglum, A. D. (2020). Reduced Brd1 expression leads to reversible depression-like behaviors and gene-expression changes in female mice. Translational Psychiatry, 10, Article 239. https://doi.org/10.1038/s41398-020-00914-2

Reinhard, T., Timany, A. & Jacobs, B. (2020). A Separation Logic to Verify Termination of Busy-Waiting for Abrupt Program Exit: Technical Report.

Borisov, D., Sheshmani, A. & Yau, S.-T. (2020). Global shifted potentials for moduli stacks of sheaves on Calabi-Yau four-folds II (the stable locus). ArXiv. https://arxiv.org/pdf/2007.13194.pdf

Leitner, A. B., Neuheimer, A. B., Neuheimer, A. B. & Drazen, J. C. (2020). Evidence for long-term seamount-induced chlorophyll enhancements. Scientific Reports, 10(1), Article 12729. https://doi.org/10.1038/s41598-020-69564-0

Skursch, O., Tegner, C., Lesher, C. E. & Cawthorn, R. G. (2020). Two expressions of the transition from mafic cumulates to granitoids in the Bushveld Complex, South Africa: Examples from the western and eastern limbs. Lithos, 372-373, Article 105671. https://doi.org/10.1016/j.lithos.2020.105671

Fogang, L. T., Solling, T. I., Pedersen, J. S., Kamal, M. S. & Sultan, A. S. (2020). Real-time monitoring of oil-induced micellar transitions in viscoelastic surfactants by small-angle X-ray scattering. Journal of Colloid and Interface Science, 580, 399-406. https://doi.org/10.1016/j.jcis.2020.07.042

Teilmann, J., Stepien, E. N., Sveegaard, S., Dietz, R., Balle, J. D., Kyhn, L. A. & Galatius, A. (2020). Sælers bevægelsesadfærdsmønstre i Limfjorden og de omkringliggende åer: Analyser af adfærd af spættede sæler mærket med satellitsender i Limfjorden i relation til åer med havørredproduktion. Aarhus University, DCE - Danish Centre for Environment and Energy. Teknisk rapport fra DCE - Nationalt Center for Miljø og Energi No. 176 http://dce2.au.dk/pub/TR176.pdf

Ponce-Antón, G., Lindroos, A., Ringbom, Å., Ortega, L. A., Zuluaga, M. C., Hajdas, I., Olsen, J. & Agirre Mauleon, J. (2020). Comparison of sample preparation procedures for mortar radiocarbon dating. Case study of Irulegi Castle (Navarre, Spain). Quaternary Geochronology, 60, Article 101110. https://doi.org/10.1016/j.quageo.2020.101110

Wang, D., Yang, Y., Wang, Y., Proulle, V., Andreasen, P. A., Hong, W., Chen, Z., Huang, M. & Xu, P. (2020). Embelin ameliorated sepsis-induced disseminated intravascular coagulation intensities by simultaneously suppressing inflammation and thrombosis. Biomedicine & Pharmacotherapy, 130, Article 110528. https://doi.org/10.1016/j.biopha.2020.110528

Meldgaard, S. R. A., Mortensen, H. L., Jorgensen, M. S. & Hammer, B. (2020). Structure prediction of surface reconstructions by deep reinforcement learning. Journal of Physics Condensed Matter, 32(40), Article 404005. https://doi.org/10.1088/1361-648X/ab94f2

Warnet, X. L., Bakke Krog, H., Sevillano-Quispe, O. G., Poulsen, H. & Kjaergaard, M. (2021). The C-terminal domains of the NMDA receptor: How intrinsically disordered tails affect signalling, plasticity and disease. European Journal of Neuroscience, 54(8), 6713-6739. https://doi.org/10.1111/ejn.14842

Sørensen, C. S. & Kjaergaard, M. (2020). Measuring Effective Concentrations Enforced by Intrinsically Disordered Linkers. In B. B. Kragelund & K. Skriver (Eds.), Methods in Molecular Biology: Methods and protocols (pp. 505-518). Humana Press. https://doi.org/10.1007/978-1-0716-0524-0_25

Dear, A. J., Meisl, G., Saric, A., Michaels, T. C. T., Kjaergaard, M., Linse, S. & Knowles, T. P. J. (2020). Identification of on- and off-pathway oligomers in amyloid fibril formation. Chemical Science, 11(24), 6236-6247. https://doi.org/10.1039/c9sc06501f

Lazarov, E., Hillebrand, M., Schröder, S., Ternka, K., Hofhuis, J., Ohlenbusch, A., Barrantes-Freer, A., Pardo, L. A., Fruergaard, M. U., Nissen, P., Brockmann, K., Gärtner, J. & Rosewich, H. (2020). Comparative analysis of alternating hemiplegia of childhood and rapid-onset dystonia-parkinsonism ATP1A3 mutations reveals functional deficits, which do not correlate with disease severity. Neurobiology of Disease, 143, Article 105012. https://doi.org/10.1016/j.nbd.2020.105012

Tundo, G. R., Sbardella, D., Santoro, A. M., Coletta, A., Oddone, F., Grasso, G., Milardi, D., Lacal, P. M., Marini, S., Purrello, R., Graziani, G. & Coletta, M. (2020). The proteasome as a druggable target with multiple therapeutic potentialities: Cutting and non-cutting edges. Pharmacology and Therapeutics, 213, Article 107579. https://doi.org/10.1016/j.pharmthera.2020.107579

Levy, L. B., Larsen, N. K., Knudsen, M. F., Egholm, D. L., Bjørk, A. A., Kjeldsen, K. K., Kelly, M. A., Howley, J. A., Olsen, J., Tikhomirov, D., Zimmerman, S. R. H. & Kjær, K. H. (2020). Multi-phased deglaciation of south and southeast Greenland controlled by climate and topographic setting. Quaternary Science Reviews, 242, Article 106454. https://doi.org/10.1016/j.quascirev.2020.106454

Wang, X., Chen, W., Yang, H., Zhang, X., Deng, M., Zhou, X., Huang, K., Chen, P. & Ying, B. (2020). Multimode detection of β-glycosidase and pathogenic bacteria via cation exchange assisted signal amplification. Microchimica Acta, 187(8), Article 453. https://doi.org/10.1007/s00604-020-04442-0

Wood, J. M., Haeri-Ardakani, O., Sanei, H., Curtis, M. E. & Royer, D. (2020). Application of paleoporosity and bitumen saturation concepts to tight-gas accumulations containing solid bitumen. International Journal of Coal Geology, 228, Article 103547. https://doi.org/10.1016/j.coal.2020.103547

Damgaard-Møller, E., Krause, L., Tolborg, K., Macetti, G., Genoni, A. & Overgaard, J. (2020). Quantification of the Magnetic Anisotropy of a Single-Molecule Magnet from the Experimental Electron Density. Angewandte Chemie International Edition, 59(47), 21203-21209. https://doi.org/10.1002/anie.202007856

Eller, F., Hyldgaard, B. N., Driever, S. & Ottosen, C.-O. (2020). Inherent trait differences explain wheat cultivar responses to climate factor interactions: New insights for more robust crop modelling. Global Change Biology, 26(10), 5965-5978. https://doi.org/10.1111/gcb.15278

Tausen, M., Clausen, M. M., Moeskjær, S., Shihavuddin, ASM., Dahl, A. B., Janss, L. & Andersen, S. U. (2020). Greenotyper: Image-based plant phenotyping using distributed computing and deep learning. Frontiers in Plant Science, 11, Article 1181. https://doi.org/10.3389/fpls.2020.01181

Aranha, D. F., Novaes, F. R., Takahashi, A., Tibouchi, M. & Yarom, Y. (2020). LadderLeak: Breaking ECDSA with Less than One Bit of Nonce Leakage. In CCS 2020 - Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security: Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security (pp. 225-242). Association for Computing Machinery. https://doi.org/10.1145/3372297.3417268

Roth, N., Zhu, T. & Iversen, B. B. (2020). A simple model for vacancy order and disorder in defective half-Heusler systems. IUCrJ, 7(4), 673-680. https://doi.org/10.1107/S2052252520005977

Pedersen, J. N., Frislev, H. K. S., Pedersen, J. S. & Otzen, D. (2020). Structures and mechanisms of formation of liprotides. Biochimica et Biophysica Acta - Proteins and Proteomics, 1868(11), Article 140505. https://doi.org/10.1016/j.bbapap.2020.140505

Christensen, L. F. B., Nowak, J. S., Sønderby, T. V., Frank, S. A. & Otzen, D. E. (2020). Quantitating denaturation by formic acid: Imperfect repeats are essential to the stability of the functional amyloid protein FapC. Journal of Biological Chemistry, 295(37), 13036-13041. https://doi.org/10.1074/jbc.ra120.013396

Jensen, G. V., Pedersen, J. N., Otzen, D. E. & Pedersen, J. S. (2020). Multi-Step Unfolding and Rearrangement of α-Lactalbumin by SDS Revealed by Stopped-Flow SAXS. Frontiers in Molecular Biosciences, 7, Article 125. https://doi.org/10.3389/fmolb.2020.00125

Wray, K. B. (2021). Kuhn, Thomas and Scientific Paradigms. In G. Ritzer & C. Rojek (Eds.), The Blackwell Encyclopedia of Sociology (2 ed.). Wiley. https://doi.org/10.1002/9781405165518.wbeosk016.pub2, https://doi.org/10.1002/9781405165518

Filogonio, R., Sartori, M. R., Mogensen, S., Tavares, D., Campos, R., Abe, A. S., Taylor, E. W., Rodrigues, G. J., De Nucci, G., Simonsen, U., Leite, C. A. C. & Wang, T. (2020). Cholinergic regulation along the pulmonary arterial tree of the South American rattlesnake: vascular reactivity, muscarinic receptors, and vagal innervation. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 319(2), R156-R170. https://doi.org/10.1152/ajpregu.00310.2019

Damgaard-Møller, E., Krause, L. & Overgaard, J. (2020). Experimental Charge Densities from Multipole Modeling: Moving into the Twenty-First Century. In Structure and Bonding (pp. 145-182). Springer. https://doi.org/10.1007/430_2020_61

Buchholtz, P. E., Ashkanian, M., Hjerrild, S., Hauptmann, L. K., Devantier, T. A., Jensen, P., Wissing, S., Thorgaard, M., Bjerager, L., Saugberg, J. L., Alrø, A., Speed, M., Brund, R. B. K. & Videbech, P. (2020). Low frequency rTMS inhibits the anti-depressive effect of ECT: A pilot study. Acta Neuropsychiatrica, 32(6), 328-338. https://doi.org/10.1017/neu.2020.28

Våben, C., Heinemeier, K. M., Schjerling, P., Olsen, J., Petersen, M. M., Kjaer, M. & Krogsgaard, M. R. (2020). No detectable remodelling in adult human menisci: an analysis based on the C14 bomb pulse. British Journal of Sports Medicine, 54(23), 1433-1437. https://doi.org/10.1136/bjsports-2019-101360, https://doi.org/10.1136/bjsports-2019-101360

González Robert, G. (2020). Purely periodic and transcendental complex continued fractions. Acta Arithmetica, 194(3), 241-265. https://doi.org/10.4064/aa180502-17-6

Wray, K. B. (2020). Paradigms in Structure: finally, a count. Scientometrics, 125(1), 823-828. https://doi.org/10.1007/s11192-020-03669-1

Lissandrini, M., Pedersen, T. B., Hose, K. & Mottin, D. (2020). Knowledge Graph Exploration: Where Are We and Where Are We Going? S I G W E B Newsletter, (Summer), Article 4. https://doi.org/10.1145/3409481.3409485

Abu-Jaber, N., Al Khasawneh, S., Alqudah, M., Hamarneh, C., Al-Rawabdeh, A. & Murray, A. (2020). Lake Elji and a geological perspective on the evolution of Petra, Jordan. Palaeogeography, Palaeoclimatology, Palaeoecology, 557, Article 109904. https://doi.org/10.1016/j.palaeo.2020.109904

Thomsen, K. (2020). Phase transition in the CAR algebra. Advances in Mathematics, 372, Article 107312. https://doi.org/10.1016/j.aim.2020.107312

Schaldemose, E. L., Hammer, R. E., Ferdousi, M., Malik, R. A., Nyengaard, J. R. & Karlsson, P. (2020). An unbiased stereological method for corneal confocal microscopy in patients with diabetic polyneuropathy. Scientific Reports, 10, Article 12550. https://doi.org/10.1038/s41598-020-69314-2

Carmona, F. J., Dal Sasso, G., Bertolotti, F., Ramírez-Rodríguez, G. B., Delgado-López, J. M., Pedersen, J. S., Masciocchi, N. & Guagliardi, A. (2020). The role of nanoparticle structure and morphology in the dissolution kinetics and nutrient release of nitrate-doped calcium phosphate nanofertilizers. Scientific Reports, 10(1), Article 12396. https://doi.org/10.1038/s41598-020-69279-2

Bourque, J., Desforges, J. P., Levin, M., Atwood, T. C., Sonne, C., Dietz, R., Jensen, T. H., Curry, E. & McKinney, M. A. (2020). Climate-associated drivers of plasma cytokines and contaminant concentrations in Beaufort Sea polar bears (Ursus maritimus). Science of the Total Environment, 745, Article 140978. https://doi.org/10.1016/j.scitotenv.2020.140978

Mooney, D. E., Andreasen, R. & Guðmundsdóttir, L. (2020). 87Sr/86Sr analysis of charred barley from Iceland and western Norway: preliminary results. Abstract from European Association of Archaeologists Virtual Meeting 2020.

Andreasen, R. & Thomsen, E. (2020). Agricultural Lime Affects Natural Strontium Isotope Variations—Implications for Human Migration Studies. Abstract from European Association of Archaeologists Virtual Meeting 2020.

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Anne Kirstine Mehlsen