Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kristoffersen, H. H., Hansen, J. Ø., Martinez, U., Wei, Y. Y., Matthiesen, J., Streber, R., Bechstein, R., Lægsgaard, E., Besenbacher, F., Hammer, B. & Wendt, S. (2013). Role of steps in the dissociative adsorption of water on rutile TiO₂ (110). Physical Review Letters, 110(14), Article 146101. https://doi.org/10.1103/PhysRevLett.110.146101

Kolind, K., Kraft, D. C. E., Bøggild, T. M. L., Duch, M., Lovmand, J., Pedersen, F. S., Bindslev, D. A., Bünger, C., Foss, M. & Besenbacher, F. (2014). Control of proliferation and osteogenic differentiation of human dental-pulp-derived stem cells by distinct surface structures. Acta Biomaterialia, 10(2), 641-650. https://doi.org/10.1016/j.actbio.2013.11.006

Findsen, A., Andersen, J. L., Calderon, S. & Overgaard, J. (2012). Recovery of ion homeostasis following cold shock precedes chill coma recovery and resumption of mating behavior in Locusta migratoria. Poster session presented at Annual Main Meeting for the Society of Experimental Biology 2012, Salzburg, Austria. http://sebiology.org/meetings/Past_Meetings/Salzburg2012/Salzburg.html

Arman, M. A., Andersen, M., Granas, E., Gerber, T., Hammer, B., Schnadt, J., Andersen, J. N., Michely, T. & Knudsen, J. (2013). CO intercalation of graphene on Ir(111) in the millibar regime. The Journal of Physical Chemistry Part C, 117(32), 16438-16447. https://doi.org/10.1021/jp4043045

Bebensee, F., Svane, K., Bombis, C., Masini, F., Klyatskaya, S., Besenbacher, F., Ruben, M., Hammer, B. & Linderoth, T. (2013). Adsorption and dehydrogenation of tetrahydroxybenzene on Cu(111). Chemical Communications, 49(81), 9308-9310. https://doi.org/10.1039/c3cc45052j

Assent, I., Domeniconi, C., Gullo, F., Tagarelli, A. & Zimek, A. (Eds.) (2013). Proceedings of the 4th MultiClust Workshop on Multiple Clusterings, Multi-view Data, and Multi-source Knowledge-driven Clustering. Association for Computing Machinery. http://dl.acm.org.ez.statsbiblioteket.dk:2048/citation.cfm?id=2501006&coll=DL&dl=ACM

Jørgensen, U., Elsgaard, L., Sørensen, P., Olsen, P., Vinther, F. P., Kristensen, E. F., Ejrnæs, R., Nygaard, B., Krogh, P. H., Bruhn, A., Rasmussen, M. B., Johansen, A., Jensen, S. K., Gylling, M. & Bojesen, M. (2013). Biomasseudnyttelse i Danmark - potentielle ressourcer og bæredygtighed. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 033

Turon, A., Dreyer , D. & Birkedal, L. (2013). Unifying refinement and hoare-style reasoning in a logic for higher-order concurrency. In G. Morrisett & T. Uustalu (Eds.), Proceedings of the 18th ACM SIGPLAN International Conference on Functional Programming, ICFP '13 (pp. 377-390 ). Association for Computing Machinery. https://doi.org/10.1145/2500365.2500600

Andersen, J. L., Findsen, A. & Overgaard, J. (2012). Impaired chill tolerance in digesting migratory locust (Locusta migratoria). Poster session presented at Annual Main Meeting for the Society of Experimental Biology 2012, Salzburg, Austria. http://sebiology.org/meetings/Past_Meetings/Salzburg2012/Salzburg.html

Stausholm-Møller, J., Kristoffersen, H. H., Martinez, U. & Hammer, B. (2013). A density functional theory study of atomic steps on stoichiometric rutile TiO₂(110). Journal of Chemical Physics, 139(23), 234704. https://doi.org/10.1063/1.4840515

Andersen, J. L., Manenti, T., Sørensen, J. G., Loeschcke, V. & Overgaard, J. (2013). Many kinds of cold: Evaluation of different measures of insect cold resistance. Poster session presented at Annual Main Meeting for the Society of Experimental Biologists 2013, Valencia, Spain. http://sebiology.org/meetings/Past_Meetings/Valencia/Valencia.html

Munch, K., Mailund, T., Dutheil, J. Y. & Schierup, M. H. (2014). A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion. Genome Research. https://doi.org/10.1101/gr.158469.113

Findsen, A., Pedersen, T. H., Petersen, A. G., Nielsen, O. B. & Overgaard, J. (2014). Why do insects enter and recover from chill coma? Low temperature and high extracellular potassium compromises muscle function in Locusta migratoria. Journal of Experimental Biology, 217(8), 1297-1306. https://doi.org/10.1242/jeb.098442

Magnani, M., Assent, I., Hornbæk, K., Jakobsen, M. R. & Larsen, K. F. (2013). SkyView: a user evaluation of the skyline operator. In Q. He & A. Iyengar (Eds.), Proceedings of the 22nd ACM International Conference on Information & Knowledge Management, CIKM '13 (pp. 2249-2254 ). Association for Computing Machinery. https://doi.org/10.1145/2505515.2505739

Aksyutina, Y., Aumann, T., Boretzky, K., Borge, M. J. G., Caesar, C., Chatillon, A., Chulkov, L. V., Cortina-Gil, D., Datta Pramanik, U., Emling, H., Fynbo, H. O. U., Geissel, H., Heinz, A., Ickert, G., Johansson, H. T., Jonson, B., Kulessa, R., Langer, C., Lebleis, T. ... Zhukov, M. V. (2013). Study of the ¹⁴Be continuum: Identification and structure of its second 2⁺ state. Physical Review Letters, 111(24). https://doi.org/10.1103/PhysRevLett.111.242501

Dupont-Dupuis, F., Szehr, O. & Tomamichel, M. (2014). A decoupling approach to classical data transmission over quantum channels. I E E E Transactions on Information Theory, 60(3), 1562 - 1572 . https://doi.org/10.1109/TIT.2013.2295330

Arge, L., Goodrich, M. T. & Walderveen, F. V. (2013). Computing betweenness centrality in external memory. In Proceedings, 2013 IEEE International Conference on Big Data (pp. 368 - 375 ). IEEE. https://doi.org/10.1109/BigData.2013.6691597

Wasmund, K., Schreiber, L., Lloyd, K., Petersen, D. G., Schramm, A., Stepanauskas, R., Jørgensen, B. B. & Adrian, L. (2014). Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. I S M E Journal, 8, 383-397. https://doi.org/10.1038/ismej.2013.143

Banerjee, A., Danvy, O., Doh, K.-G. & Hatcliff , J. (Eds.) (2013). Semantics, Abstract Interpretation, and Reasoning about Programs: Essays Dedicated to David A. Schmidt on the Occasion of his Sixtieth Birthday : Festschrift for Dave Schmidt, Manhattan, Kansas, USA, 19-20th September 2013. http://published.eptcs.org/. Electronic Proceedings in Theoretical Computer Science Vol. 129 https://doi.org/10.4204/EPTCS.129

Birkedal, L., Bizjak, A. & Schwinghamme, J. (2013). Step-Indexed Relational Reasoning for Countable Nondeterminism. Logical Methods in Computer Science, 9(4), Article 4. https://doi.org/10.2168/LMCS-9(4:4)2013

Holm, L.-E., Dolezal , M. A., Bagnato, A., Vilkki, J. & Panitz, F. (2013). SNP detection workflow for deep re-sequencing data in cattle. In Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production (2013 ed., Vol. 19, pp. 543). Wageningen Academic Publishers. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Holm, L.-E., Dolezal , M. A., Bagnato, A., Vilkki, J. & Panitz, F. (2013). SNP detection workflow for deep re-sequencing data in cattle. Poster session presented at 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Hove, D., Jensen, A. S. & Riisager, K. (2013). Global phenomenological descriptions of nuclear odd-even mass staggering. Physical Review C (Nuclear Physics), 88. https://doi.org/10.1103/PhysRevC.88.064329

Maia, R. P., Madsen, P., Pedersen, J. & Labouriau, R. (2013). Genetic study of mortality rate in Danish dairy cows: a multivariate competing risk analysis. Poster session presented at 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Min, G., Bjerglund, K. M., Kramer, S., Gøgsig, T., Lindhardt, A. T. & Skrydstrup, T. (2013). Generation of Stoichiometric Ethylene and Isotopic Derivatives and Application in Transition Metal-Catalyzed Vinylation and Enyne Metathesis. Chemistry: A European Journal, 19(51), 17603–17607. https://doi.org/10.1002/chem.201303668

Cedhagen, T., Lejzerowicz, F. & Pawlowski, J. (2013). Foraminifera of the deep Southern Ocean: bentho-pelagic distribution and past and present metagenetics. In Berichte zur Polar- und Meeresforschung (pp. 81-83)

Cedhagen, T., Hauquier, F., Jörger, K., Lejzerowicz, F., Mulsow, S., Würzberg, L. & Zinkann, A.-C. (2013). Foraminifera of the deep Southern Ocean: MUC deployments. In Berichte zur Polar- und Meeresforschung (pp. 76-78)

Janussen, D., Brandao, S., Cedhagen, T., Hauquier, F., Havermans, C., Jörger, K., Lejzerowicz, F., Meyer-Löbbecke, A., Schnurr, S., Schwabe, E., Vortkamp, M., Würzberg, L., Zinkann, A. C. & Brandt, A. (2013). Agassiz trawl (AGT) deployments. In Berichte zur Polar- und Meeresforschung (pp. 115-117)

Wohl, B. M., Smith, A. A. A., Kryger, M. B. L. & Zelikin, A. N. (2013). Narrow Therapeutic Window of Ribavirin as an Inhibitor of Nitric Oxide Synthesis is Broadened by Macromolecular Prodrugs. Biomacromolecules, 14(11), 3916-26. https://doi.org/10.1021/bm401048s

Lund-Hansen, L. C., Hawes, I., Sorrell, B. K. & Holtegaard Nielsen, M. (2014). Removal of snow cover inhibits spring growth of Arctic ice algae through physiological and behavioral effects. Polar Biology, 37, 471–481. https://doi.org/10.1007/s00300-013-1444-z

Kalueff, A. V., Gebhardt, M., Stewart, A. M., Cachat, J. M., Brimmer, M., Chawla, J. S., Craddock, C., Kyzar, E. J., Roth, A., Landsman, S., Gaikwad, S., Robinson, K., Baatrup, E., Tierney, K., Shamchuk, A., Norton, W., Miller, N., Nicolson, T., Braubach, O. ... Zebrafish Neuroscience Research Consortium (2013). Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond. Zebrafish, 10(1), 70-86. https://doi.org/10.1089/zeb.2012.0861

Bjerregaard-Andersen, K., Perdreau-Dahl, H., Guldsten, H., Praetorius, J., Jensen, J. K. & Morth, J. P. (2013). The N-terminal cytoplasmic region of NCBE displays features of an intrinsic disordered structure and represents a novel target for specific drug screening. Frontiers in Physiology, 4, 320. https://doi.org/10.3389/fphys.2013.00320

Howard, K. & Peer, D. (2013). Providing the full picture: A mandate for standardizing nanoparticle-based drug delivery. Nanomedicine, 8(7), 1031-1033. https://doi.org/10.2217/NNM.13.95

Uzureau, P., Uzureau, S., Lecordier, L., Fontaine, F., Tebabi, P., Homblé, F., Grélard, A., Zhendre, V., Nolan, D. P., Lins, L., Crowet, J.-M., Pays, A., Felu, C., Poelvoorde, P., Vanhollebeke, B., Moestrup, S. K., Lyngsø, J., Pedersen, J. S., Mottram, J. C. ... Pays, E. (2013). Mechanism of Trypanosoma brucei gambiense resistance to human serum. Nature, 501(7467), 430-4. https://doi.org/10.1038/nature12516

Baggesen, L. M., Hoffmann, S. V. & Nielsen, S. B. (2014). On the Formation of Thymine Photodimers in Thymine Single Strands and Calf Thymus DNA. Photochemistry and Photobiology, 90(1), 99-106. https://doi.org/10.1111/php.12183

Pedersen, S. O., Støchkel, K., Byskov, C. S., Nielsen, L. M. & Nielsen, S. B. (2013). Gas-phase spectroscopy of protonated adenine, adenosine 5′-monophosphate and monohydrated ions. Physical Chemistry Chemical Physics, 15(45), 19748-19752. https://doi.org/10.1039/c3cp53742k

MacLot, S., Rangama, J., Nielsen, S. B. & Poully, J.-C. (2013). Nanosolvation by acetonitrile and 18-crown-6 ether induce strongly different effects on the electron-capture induced dissociation of aromatic tripeptide cations in the gas phase. International Journal of Mass Spectrometry, 337, 1-11. https://doi.org/10.1016/j.ijms.2012.12.014

Demers-Carpentier, V., Rasmussen, A. M. H., Goubert, G., Ferrighi, L., Dong, Y., Lemay, J.-C., Masini, F., Zeng, Y., Hammer, B. & McBreen, P. H. (2013). Stereodirection of an α-ketoester at sub-molecular sites on chirally modified Pt(111): Heterogeneous asymmetric catalysis. Journal of the American Chemical Society, 135(27), 9999-10002. https://doi.org/10.1021/ja403955k

Gonzalez, B. B. & Howard, K. (2012). Polycation-based nanoparticle delivery of RNAi therapeutics: Adverse effects and solutions. Advanced Drug Delivery Reviews, 64(15), 1717-1729. https://doi.org/10.1016/j.addr.2012.07.004

Ebbesen, M. F., Schaffert, D. H., Crowley, M. L., Oupický, D. & Howard, K. (2013). Synthesis of click-reactive HPMA copolymers using RAFT polymerization for drug delivery applications. Journal of Polymer Science. Part A, Polymer Chemistry, 51(23), 5091-5099. https://doi.org/10.1002/pola.26941

Howard, K. (2013). Bioresponsive nanoparticles for the intracellular delivery of RNAi therapeutics. In Nanotechnology for the Delivery of Therapeutic Nucleic Acids (pp. 129-151). Pan Stanford Publishing. https://doi.org/10.4032/9789814411059

Nawroth, I., Alsner, J., Deleuran, B. W., Dagnæs-Hansen, F., Yang, C., Horsman, M. R., Overgaard, J., Howard, K., Kjems, J. & Gao, S. (2013). Peritoneal macrophages mediated delivery of chitosan/siRNA nanoparticle to the lesion site in a murine radiation-induced fibrosis model. Acta Oncologica, 52(8), 1730-1738. https://doi.org/10.3109/0284186X.2012.726373

Gonzalez, B. B., Ebbesen, M. F. & Howard, K. (2014). Polycation-based nanoparticles for RNAi-mediated cancer treatment. Cancer Letters, 352, 66-80. https://doi.org/10.1016/j.canlet.2013.09.023

Ebbesen, M. F., Whitehead, B. J., Gonzalez, B. B., Kingshott, P. & Howard, K. (2013). Surface analysis of PEGylated nano-shields on nanoparticles installed by hydrophobic anchors. Pharmaceutical Research, 30(7), 1758-1767. https://doi.org/10.1007/s11095-013-1018-3

Glover, K. A., Pertoldi, C., Besnier, F., Wennevik, V., Kent, M. & Skaala, T. (2013). Atlantic salmon populations invaded by farmed escapees: Quantifying genetic introgression with a Bayesian approach and SNPs. B M C Genetics, 14, 74. https://doi.org/10.1186/1471-2156-14-74

Levi, P. S., Tank, J. L., Tiegs, S. D., Chaloner, D. T. & Lamberti, G. A. (2013). Biogeochemical transformation of a nutrient subsidy: Salmon, streams, and nitrification. Biogeochemistry, 113(1-3), 643-655. https://doi.org/10.1007/s10533-012-9794-0

Kragh, H. (2014). Naming the big bang. Historical Studies in the Natural Sciences, 44(1), 3-36. https://doi.org/10.1525/hsns.2014.44.1.3

Smith, A. B., Sandel, B., Kraft, N. J. B. & Carey, S. (2013). Characterizing scale-dependent community assembly using the functional-diversity-area relationship. Ecology, 94(11), 2392-2402.

Pellissier, L., Rohr, R. P., Ndiribe, C., Pradervand, J.-N., Salamin, N., Guisan, A. & Wisz, M. (2013). Combining food web and species distribution models for improved community projections. Ecology and Evolution, 3(13), 4572-4583. https://doi.org/10.1002/ece3.843

Czarnomska, S. D., Jedrzejewska, B., Borowik, T., Niedziałkowska, M., Stronen, A. V., Nowak, S., Mysłajek, R. W., Okarma, H., Konopiński, M., Pilot, M., Śmietana, W., Caniglia, R., Fabbri, E., Randi, E., Pertoldi, C. & Jedrzejewski, W. (2013). Concordant mitochondrial and microsatellite DNA structuring between Polish lowland and Carpathian Mountain wolves. Conservation Genetics, 14(3), 573-588. https://doi.org/10.1007/s10592-013-0446-2

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