Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Borchsenius, F., Bernal, R. & Pintaud, J.-C. (2010). A phylogeny of the Andean palm genus Aiphanes. Abstract from A phylogeny of the Andean palm genus Aiphanes, Montpellier, France.

Storz, J. F., Runck, A. M., Moriyama, H., Weber, R. E. & Fago, A. (2010). Mechanisms of hemoglobin adaptation to hypoxia in high-altitude rodents. Abstract from XVIth International conference on oxygen binding and sensing proteins, Antwerpen, Netherlands.

Tilleman, L., De Henau, S., Geuens, E., Hoogewijs, D., Nardini, M., Vinck, E., Pesce, A., Kiger, L., Fago, A., Marden, M., Weber, R. E., Van Doorslaer, S., Vanfleteren, J., Moens, L., Bolognesi, M. & Dewilde, S. (2010). Characterization and myristoylation of C. elegans GLB-26. Abstract from XVIth International conference on oxygen binding and sensing proteins, Antwerpen, Netherlands.

Helbo, S. & Fago, A. (2010). S-nitrosylation allosterically modulates the O2 affinity of myoglobin from rainbow trout. Abstract from XVIth International conference on oxygen binding and sensing proteins, Antwerpen, Netherlands.

Kristiansen, T., Svenning, J.-C., Pedersen, D., Eiserhardt, W. L., Grández, C. & Balslev, H. (2010). Local and regional palm species richness in the western Amazon: Richness patterns driven by both local and regional factors. Poster session presented at Palms 2010 - Biology of the palm family, Montpellier, France.

Sand, A., Brask, A. T., Pedersen, C. N. S., Mailund, T. & Brask, A. T. (2010). HMMlib: A C++ Library for General Hidden Markov Models Exploiting Modern CPUs. In 2010 Ninth International Workshop on Parallel and Distributed Methods in Verification and Second International Workshop on High Performance Computational Systems Biology (pp. 126 - 134 ). IEEE.

Riis, T. & Baattrup-Pedersen, A. (2011). Spatial distribution and temporal dynamic of the seed pool in a Danish lowland stream. Aquatic Botany, 94, 188-192.

Abu-Samha, M. & Madsen, L. B. (2010). Photoelectron angular distributions from polar molecules probed by intense femtosecond lasers. Physical Review A, 82(4), 043413. https://doi.org/10.1103/PhysRevA.82.043413

Frøyshov, K. A. (2010). Monopole Floer homology for rational homology 3-spheres. Duke Mathematical Journal, 155(3), 519-576. https://doi.org/10.1215/00127094-2010-060

Vivika, M., Odgaard, B. V. & Poska, A. (2010). Imperical and modelling approaches to identify diversity signals in pollen assemblages. Poster session presented at LANDCLIM Workshop on vegetation modelling and vegetation palaeodata, Lund, Sweden.

Odgaard, B. V. (2011). Holocene climate variability: Boreas book review: Battarbee, R. W. & Binney, H. A. (Eds.) 2008: Natural Climate Variability and Global Warming. A HolocenePerspective. 276 pp. Wiley-Blackwell, Chichester. ISBN 978-1-4051-5905-0. Hardbound, Full Colour. Boreas, 40, 208-209.

Bender, M. A., Brodal, G. S., Fagerberg, R., Jacob, R. & Vicari, E. (2010). Optimal Sparse Matrix Dense Vector Multiplication in the I/O-Model. Theory of Computing Systems, 47(4), 934-962. https://doi.org/10.1007/s00224-010-9285-4

Brodal, G. S., Gfeller, B., Jørgensen, A. G. & Sanders, P. (2011). Towards optimal range medians. Theoretical Computer Science, 412(24), 2588-2601. https://doi.org/10.1016/j.tcs.2010.05.003

Bender, M. A., Brodal, G. S., Fagerberg, R., Ge, D., He, S., Hu, H., Iacono, J. & López-Ortiz, A. (2011). The Cost of Cache-Oblivious Searching. Algorithmica, 61(2), 463-505. https://doi.org/10.1007/s00453-010-9394-0

Kutz, M., Brodal, G. S., Kaligosi, K. & Katriel, I. (2011). Faster Algorithms for Computing Longest Common Increasing Subsequences. Journal of Discrete Algorithms, 9(4), 314-325. https://doi.org/10.1016/j.jda.2011.03.013

Afshani, P., Brodal, G. S. & Zeh, N. (2011). Ordered and Unordered Top-K Range Reporting in Large Data Sets. In Proceedings of the 22nd Annual ACM-SIAM Symposium on Discrete Algoritms. SODA 2011 (pp. 390-400). Society for Industrial and Applied Mathematics. http://www.siam.org/proceedings/soda/2011/SODA11_031_afshanip.pdf

Petersen, M. G., Krogh, P., Mortensen, M. B., Møller-Lassen, T. & Mortensen, D. H. (2010). Collective interaction by design collective controllers for social navigation on digital photos. In Proceedings of the 6th Nordic Conference on Human-Computer Interaction: Extending Boundaries (pp. 353-362). Association for Computing Machinery. https://doi.org/10.1145/1868914.1868956

Petersen, M. G., Lynggard, A. B., Krogh, P. G. & Winther, I. W. (2010). Tactics for homing in mobile life: a fieldwalk study of extremely mobile people. In Proceedings of the 12th International Conference on Human Computer Interaction with Mobile Devices and Services: Proceedings of the 12th international conference on Human computer interaction with mobile devices and services (pp. 265-274). Association for Computing Machinery. https://doi.org/10.1145/1851600.1851646

Kannabiran, G. & Petersen, M. G. (2010). Politics at the interface: a Foucauldian power analysis. In E. T. Hvannberg & M. K. Lárusdóttir (Eds.), Proceedings of the 6th Nordic Conference on Human-Computer Interaction. NordiCHI '10: Extending Boundaries (pp. 695-698). Association for Computing Machinery. https://doi.org/10.1145/1868914.1869007

Lynggaard, A. B., Petersen, M. G., Gude, R. & Mortensen, M. B. (2010). Home awareness - connecting people sensuously to places. In O. W. Bertelsen, P. Krogh, K. Halskov & M. G. Petersen (Eds.), Proceedings of the 8th ACM Conference on Designing Interactive Systems, DIS '10 (pp. 416-418). Association for Computing Machinery. https://doi.org/10.1145/1858171.1858251

Dantan, A. (2006). Cavity-QED with ion Coulomb crystals. Poster session presented at WE-Heraeus-Seminar on Strong Coupling of Light and Matter, Bad Honnef, Germany.

Chantis, A., Albers, R., Svane, A., Christensen, N. E., van Schilfgaarde, M. & Kotani, T. (2009). GW correlation effects on the quasiparticle energies of Np and Pu. American Physical Society. Bulletin, Vol. 54(No. 1).

Christensen, N. E., Svane, A. & Laskowski, R. M. (2009). The transparent p-conductor CuAlO₂. Paper presented at International Conference “Functional Materials and Nanotechnologies” - FM&NT-2009, Riga, Poland.

Fischel, A., Seidenkrantz, M.-S., Roncaglia, L., Heilmann-Clausen, C., Kuijpers, A. & Moros, M. (2008). Climatic variations in the North Atlantic documented by palynomorph analyses of late Holocene sediments from Disko Bay, West Greenland. Abstract from 28th Nordic Geological Meeting, Aalborg, Denmark.

Li, Y., Vinckenbosch, N., Tian, G., Huerta-Sanchez, E., Jiang, T., Jiang, H., Albrechtsen, A., Andersen, G., Cao, H., Korneliussen, T., Grarup, N., Guo, Y., Hellman, I., Jin, X., Li, Q., Liu, J., Liu, X., Sparsø, T., Tang, M. ... Wang, J. (2010). Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nature Genetics. https://doi.org/10.1038/ng.680

Schierup, M. H., Mailund, T., Li, H., Wang, J., Tjønneland, A., Vogel, U., Bolund, L. & Nexø, B. A. (2009). Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups. B M C Medical Genetics, 10, 20. https://doi.org/10.1186/1471-2350-10-20

Franceschi, C., Bezrukov, V., Blanché, H., Bolund, L., Christensen, K., de Benedictis, G., Deiana, L., Gonos, E., Hervonen, A., Yang, H., Jeune, B., Kirkwood, T. B. L., Kristensen, P., Leon, A., Pelicci, P. G., Peltonen, L., Poulain, M., Rea, I. M., Remacle, J. ... Vaupel, J. W. (2007). Genetics of healthy aging in Europe: the EU-integrated project GEHA (GEnetics of Healthy Aging). New York Academy of Sciences. Annals, 1100, 21-45. https://doi.org/10.1196/annals.1395.003

Li, J., Du, Y., Zhang, Y. H., Kragh, P. M., Purup, S., Bolund, L., Yang, H., Xue, Q. Z. & Vajta, G. (2006). Chemically assisted handmade enucleation of porcine oocytes. Cloning and Stem Cells, 8(4), 241-50. https://doi.org/10.1089/clo.2006.8.241

Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., Wang, J., Li, S., Li, R., Bolund, L. & Wang, J. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. https://doi.org/10.1093/nar/gkl031

Lucas, C., Raub, D. & Maurer, U. (2010). Hybrid-secure MPC : trading information-theoretic robustness for computational privacy. In Proceeding of the 29th ACM SIGACT-SIGOPS symposium on Principles of distributed computing. PODC '10 (pp. 219-228). Association for Computing Machinery. https://doi.org/10.1145/1835698.1835747

Odgaard, B. V. & Fritzbøger, B. (2010). Skovenes historie. In P. F. Møller (Ed.), Naturen i Danmark - Skovene (1 ed., Vol. 4, pp. 55-8). Gyldendal.

Jensen, S. J., Andersen, F. F., Stougaard, M., Tesauro, C., Tordrup, D. P., Bendsen, S. P., Andersen, A. H., Koch, J. E. & Knudsen, B. R. (2010). Detection of DNA topoisomerase I and related enzyme activities at the single molecule level. Poster session presented at Foundations of Nanosciences Self-assembled Architectures and Devices, Snowbird, United States.

Andersen, F. F., Jensen, S. J., Oliveira, C. L. P. D., Jørgensen, H. L., Knudsen, B., Tordrup, D. P., Oteri, F., Koch, J. E., Falconi, M., Desideri, A., Pedersen, J. S. & Knudsen, B. R. (2010). Nano-scale DNA Cages: Structural and Functional Properties of the Single-Stranded Linker Regions. Poster session presented at Foundations of Nanosciences Self-assembled Architectures and Device, Snowbird, United States.

Villesen, P., Eickhardt, E., Knudsen, B., Knudsen, B. R., Wiuf, C. H. & Andersen, F. F. (2010). Minimizing oligo sequence similarities for three dimensional DNA nanostructure assembly. Paper presented at Foundations of Nanosciences: Self-assembled Architectures and Devices, Snowbird, United States.

Andersen, F. F., Tesauro, C., Tordrup, D. P., Stougaard, M., Petersen, E., Fiorani, P., Desideri, A., Koch, J. E. & Knudsen, B. R. (2010). Rolling Circle Amplification-based assay for the specific detection of Plasmodium topoisomerase I activity on the background of the human cell . Abstract from Malaria: New Approaches to understanding Host-Parasite Interactions, Copper Mountain, United States.

Gentry, A. C., Jensen, S. J., Veigaard, C., Knudsen, B. R. & Osheroff, N. (2011). The Geometry of DNA Supercoils Modulates the DNA Cleavage Activity of Human Topoisomerase I. Nucleic Acids Research, 39(3).

Nielsen, M. G., Offenberg, H. J., Peng, R. & Birkmose, D. (2010). Mating strategy and colony rearing of Oecophylla smaragdina. Abstract from XVI International Congress for the study of Social Insects., Copenhagen, Denmark.

Nielsen, M. G., Christian, K. & Birkmose, D. (2008). How do mangrove ants in North Australia survive inundation?. Abstract from XXIII International Congress of Entomology, Durban, South Africa.

Krag, K., Lundegaard, R., Offenberg, H. J., Nielsen, M. G. & Wiwatwittaya, D. (2010). Intercolony transplantation of Oecophylla smaragdina (Hymenoptera: formicidae) larvae. Journal of Asia Pacific Entomology, 13, 97-100. https://doi.org/101016/j.aspen.d2009.12.005

Runck, A. M., Weber, R. E., Fago, A. & Storz, J. F. (2010). Evolutionary and functional properties of a two-locus β-globin polymorphism in Indian house mice. Genetics, 184, 1121-1131. https://doi.org/10.1534/genetics.109.113506

Clausen, K., Wahlberg, M., Beedholm, K., Deruiter, S. & Madsen, P. T. (2010). Click communication in harbour porpoises Phocoena phocoena. Bioacoustics - the International Journal of Animal Sound and its Recording, 20, 1-28.

Johnson, G., Frantzis, A., Johnson, C., Alexiadou, V., Ridgway, S. & Madsen, P. T. (2010). Evidence that sperm whale (Physeter macrocephalus) calves suckle through their mouth. Marine Mammal Science, 26(4), 990-996. https://doi.org/10.1111/j.1748-7692.2010.00385.x

Mooney, T. A., Hanlon, R. T., Christensen-Dalsgaard, J., Madsen, P. T., Ketten, D. R. & Nachtigall, P. E. (2010). Sound detection by the longfin squid (Loligo pealeii) studied with auditory evoked potentials: sensitivity to low-frequency particle motion and not pressure. Journal of Experimental Biology, 213, 3748-3759. https://doi.org/10.1242/jeb.048348

Taylor, E. W., Leite, C. A. C., McKenzie, D. J. & Wang, T. (2010). Control of respiration in fish, amphibians and reptiles. Brazilian Journal of Medical and Biological Research, 43, 409-424.

Sørensen, H. K. (2010). Relations between mathematics and theology: Theological aspects of the notion of infinity in the history of mathematics. In H. Kragh & M. Vejrup Nielsen (Eds.), God — a Mathematician? (pp. 27-70). Forum Teologi Naturvidenskab.

Sorrell, B. K. & Hawes, I. (2010). Convective gas flow development and the maximum depths achieved by helophyte vegetation in lakes. Annals of Botany, 105, 165-174.

Lovelock, C. E., Sorrell, B. K., Hancock, N., Hua, Q. & Swales, A. (2010). Mangrove forest and soil development on a rapidly accreting shore in New Zealand. Ecosystems, 13(3), 437-451.

Suren, A. M., Lambert, P. & Sorrell, B. K. (2011). The impact of hydrological restoration on benthic aquatic invertebrate communities in a New Zealand wetland. Restoration Ecology. https://doi.org/10.1111/j.1526-100X.2010.00723.x

Hawes, I., Safi, K., Sorrell, B. K., Webster-Brown, J. & Arscott, D. S. (2011). Summer-winter transitions in Antarctic ponds: I. The physical environment. Antarctic Science, 23, 235-242.

Sorrell, B. K., Brix, H., Fitridge, I. & Konnerup, D. (2010). Nutrient enrichment and plant invasions in wetland ecosystems: Comparison of photosynthesis, nitrogen uptake and growth in invasive Glyceria maxima and native New Zealand Carex species. Poster session presented at NEOBIOTA 2010 Conference: Biological Invasions in a Changing World - from Science to Management, København, Denmark.

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