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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Villadsen, N. L., Jacobsen, K. M., Keiding, U., Tørring, T. & Poulsen, T. (2017). Synthesis of ent-BE-43547A1 Reveals a Potent Hypoxia-Selective Anticancer Agent and Uncovers the Biosynthetic Origin of the APDCLD Natural Products. Synfact, 2017(7), A107-111. https://doi.org/10.1055/s-0036-1590288

Maurya, P. K. (2017). Imaging lithology, water conductivity, and hydraulic permeability at contaminated sites with induced polarization.

Luo, H., Lv, T., Shi, M., Wu, S., Carvalho, P. N. & Dong, R. (2017). Stabilization of Preliminary Anaerobically Digested Slurry in Post-Storage: Dynamics of Chemical Characteristics and Hygienic Quality. Water, Air and Soil Pollution, 228(8), Article 306. https://doi.org/10.1007/s11270-017-3493-3

Villadsen, N. L. (2017). Chemistry and Biology of the ADP-CLD Natural Products.

Jørgensen, J. H. (2017). Surface science studies of nanostructured graphene. Århus Universitet.

Palmer, M. H., Biczysko, M., Baiardi, A., Coreno, M., De Simone, M., Hoffmann, S. V., Jones, N. C. & Peterson, K. (2017). The ionic states of difluoromethane: a reappraisal of the low energy photoelectron spectrum including ab initio configuration interaction computations. The Journal of Chemical Physics, 147(7), Article 074305. https://doi.org/10.1063/1.4998150

Koust, S. (2017). Vanadium Oxide supported on Anatase TiO₂ (101): Development of a Model Catalyst. Århus Universitet.

Jensen, H. H. (2017). Perturbation of epithelial organization: Overexpression of NHE1 and AQP5 in cancer and EPEC infection mechanisms. Aarhus Universitet, Institut for Molekylærbiologi og genetik.

Tiljeset, M. H. (2017). Intrinsic Diophantine Approximation.

al Khasawneh, S., Murray, A. S., Bourke, S. & Bonatz, D. (2017). Testing feldspar luminescence dating of young archaeological heated materials using potshards from Pella (Tell Tabqat Fahl) in the Jordan valley. Geochronometria, 44(1), 98-110. https://doi.org/10.1515/geochr-2015-0056

Bech, M. A. (2017). Canonical Kernels on Hermitian Symmetric Spaces.

Schmitz, G. A. & Christiansen, O. (2017). Accuracy of Frequencies Obtained with the Aid of Explicitly Correlated Wave Function Based Methods. Journal of Chemical Theory and Computation, 13(8), 3602-3613. https://doi.org/10.1021/acs.jctc.7b00476

Egholm, D. L., Jansen, J., Brædstrup, C., Pedersen, V. K., Andersen, J. L., Ugelvig, S. V., Larsen, N. K. & Knudsen, M. F. (2017). Formation of plateau landscapes on glaciated continental margins. Nature Geoscience, 10 (2017)(8), 592–597. https://doi.org/10.1038/NGEO2980

Skov, L. (2017). Methods for analyzing genetic variation in modern and archaic humans.

Qian, X., Lin, Z., Guan, L., Li, Q., Wang, Y., Zhang, M. & Dong, M. (2017). In Situ Probing the Relaxation Properties of Ultrathin Polystyrene Films by Using Electric Force Microscopy. Nanoscale Research Letters, 12, Article 257. https://doi.org/10.1186/s11671-017-2019-7

Jin, L., Zhao, X., Qian, X., Wang, S., Shen, X. & Dong, M. (2017). Synthesis of porous In₂O₃/carbon composites derived from metal-organic frameworks for high performance Li-ion batteries. Materials Letters, 199, 176-179. https://doi.org/10.1016/j.matlet.2017.04.016

Ugelvig, S. V. (2017). Numerical Modeling of Subglacial Processes. Århus Universitet.

Klemmer, M. (2017). Continuous Biomass Conversion via Hydrothermal Liquefaction. Århus Universitet.

Yu, J., Biller, P., Mamakhel, M. A. H., Klemmer, M., Becker, J., Glasius, M. & Iversen, B. B. (2017). Catalytic hydrotreatment of bio-crude produced from hydrothermal liquefaction of aspen wood: A catalyst screening and parameter optimization study. Sustainable Energy & Fuels, 1(4), 832-841. https://doi.org/10.1039/C7SE00090A

Bertelsen, O. W. (2018). Commentary: Usability and the Primacy of Practice. Human-Computer Interaction, 33(2), 182-185. https://doi.org/10.1080/07370024.2017.1321991

Eriksen, E., Julsgaard, B., Madsen, S. P., Lakhotiya, H., Nazir, A. & Balling, P. (2017). Particle-particle interactions in large, sparse arrays of randomly distributed plasmonic metal nanoparticles: a two-particle model. Optics Express, 25(16), 19354-19359. https://doi.org/10.1364/OE.25.019354

Daugaard, I., Sanders, K. J., Idica, A., Vittayarukskul, K., Hamdorf, M., Krog, J. D., Chow, R., Jury, D., Hansen, L. L., Hager, H., Lamy, P., Choi, C. L., Agalliu, D. & Zisoulis, D. G. (2017). miR-151a induces partial EMT by regulating E-cadherin in NSCLC cells. Oncogenesis, 6(7), e366. https://doi.org/10.1038/oncsis.2017.66

Sirot, C., Grønkjær, P., Pedersen, J. B., Panfili, J., Zetina-Rejon, M., Tripp-Valdez, A., Ramos-Miranda, J., Flores-Hernandez, D., Sosa-Lopez, A. & Darnaude, A. M. (2017). Using otolith organic matter to detect diet shifts in Bardiella chrysoura, during a period of environmental changes. Marine Ecology Progress Series, 575, 137-152. https://doi.org/10.3354/meps12166

Hedeholm, R. B., Post, S. & Grønkjær, P. (2017). Life history trait variation of Greenland lumpfish (Cyclopterus lumpus) along a 1600 km latitudinal gradient. Polar Biology, 40(12), 2489-2498. https://doi.org/10.1007/s00300-017-2160-x

Lipsewers, Y. A., Vasquez-Cardenas, D., Seitaj, D., Schauer, R., Hidalgo-Martinez, S., Damsté, J. S. S., Meysman, F. J. R., Villanueva, L. & Boschker, H. T. S. (2017). Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment. Applied and Environmental Microbiology, 83(10), Article e03517-16. https://doi.org/10.1128/AEM.03517-16

Eslam, M., McLeod, D., Kelaeng, K. S., Mangia, A., Berg, T., Thabet, K., Irving, W. L., Dore, G. J., Sheridan, D., Grønbæk, H., Abate, M. L., Hartmann, R., Bugianesi, E., Spengler, U., Rojas, A., Booth, D. R., Weltman, M., Mollison, L., Cheng, W. ... Int Liver Dis Genetics Consortium (2017). IFN-lambda 3, not IFN-lambda 4, likely mediates IFNL3-IFNL4 haplotype-dependent hepatic inflammation and fibrosis. Nature Genetics, 49(5), 795-800. https://doi.org/10.1038/ng.3836

Kumar, A., Natarajan, C., Moriyama, H., Witt, C. C., Weber, R. E., Fago, A. & Storz, J. F. (2017). Stability-Mediated Epistasis Restricts Accessible Mutational Pathways in the Functional Evolution of Avian Hemoglobin. Molecular Biology and Evolution, 34(5), 1240-1251. https://doi.org/10.1093/molbev/msx085

Engedal, T. S., Hjort, N., Hougaard, K. D., Simonsen, C. Z., Andersen, G., Mikkelsen, I. K., Boldsen, J. K., Eskildsen, S. F., Hansen, M. B., Angleys, H., Jespersen, S. N., Pedraza, S., Cho, T.-H., Serena, J., Siemonsen, S., Thomalla, G., Nighoghossian, N., Fiehler, J., Mouridsen, K. & Østergaard, L. (2018). Transit time homogenization in ischemic stroke - A novel biomarker of penumbral microvascular failure? Journal of Cerebral Blood Flow and Metabolism, 38(11), 2006-2020. https://doi.org/10.1177/0271678X17721666

Skjørringe, T., Pedersen, P. A., Thorborg, S. S., Nissen, P., Gourdon, P. & Møller, L. B. (2017). Characterization of ATP7A missense mutants suggests a correlation between intracellular trafficking and severity of Menkes disease. Scientific Reports, 7(1), Article 757. https://doi.org/10.1038/s41598-017-00618-6

Sørensen, I. F., Edwards, S. M., Rohde, P. D. & Sørensen, P. (2017). Multiple Trait Covariance Association Test Identifies Gene Ontology Categories Associated with Chill Coma Recovery Time in Drosophila melanogaster /631/208/721 /631/208/721 /631/208/729/743 /631/208/729/743 /119 /45 /45/43 article. Scientific Reports, 7(1), Article 2413. https://doi.org/10.1038/s41598-017-02281-3

Kromann-Hansen, T., Louise Lange, E., Peter Sørensen, H., Hassanzadeh-Ghassabeh, G., Huang, M., Jensen, J. K., Muyldermans, S., Declerck, P. J., Komives, E. A. & Andreasen, P. A. (2017). Discovery of a novel conformational equilibrium in urokinase-type plasminogen activator. Scientific Reports, 7(1), Article 3385. https://doi.org/10.1038/s41598-017-03457-7

Hansen, K., Personne, E., Skjøth, C. A., Loubet, B., Ibrom, A., Jensen, R., Sørensen, L. L. & Boegh, E. (2017). Investigating sources of measured forest-atmosphere ammonia fluxes using two-layer bi-directional modelling. Agricultural and Forest Meteorology, 237-238, 80-94. https://doi.org/10.1016/j.agrformet.2017.02.008

Hansen, J. P. (2017). Asymmetric Quantum Codes on Toric Surfaces. https://arxiv.org/pdf/1708.02921.pdf

Wray, K. B. (2016). Collective Knowledge and Collective Justification. Social Epistemology Review and Reply Collective (SERRC), 5(8), 24-27.

Nielsen, K. H. (2017). Science popularization goes global: UNESCO’s Division of Science & Its Popularization. Abstract from 25th International Congress of History of Science and Technology, Rio de Janeiro, Brazil. http://www.ichst2017.sbhc.org.br/download/download?ID_DOWNLOAD=170

Mortensen, S. A., Sander, B., Jensen, R. K., Pedersen, J. S., Golas, M., Jensenius, J. C., Hansen, A. G., Thiel, S. & Andersen, G. R. (2017). Reply to Arlaud et al. Structure of the C1 complex and the unbound C1r2s2 tetramer. Proceedings of the National Academy of Sciences (PNAS), 114(29), E5768-E5770. https://doi.org/10.1073/pnas.1704353114

Madsen, J. G., Hansen, K., Matchkov, V. & Pedersen, M. (2017). HBO TREATMENT FOR DIABETIC NEUROPATHY AND RETINOPATHY IN STZ INDUCED DIABETES IN WISTAR RATS.

Rohde, P. D., Gartner, B., Ward, K., Sørensen, P. & F C Mackay, T. (2017). Genomic Analysis of Genotype-by-Social Environment Interaction for Drosophila melanogaster Aggressive Behavior. Genetics (Print), 206(4), 1969-1984. https://doi.org/10.1534/genetics.117.200642

Schaetz, F. & Zambon, M. (2017). Equivalences of coisotropic submanifolds. Journal of Symplectic Geometry, 15(1), 107-149. https://doi.org/10.4310/JSG.2017.v15.n1.a4

Zhang, M., Lykke-Andersen, S., Zhu, B., Xiao, W., Hoskins, J. W., Zhang, X., Rost, L. M., Collins, I., Bunt, M. V. D., Jia, J., Parikh, H., Zhang, T., Song, L., Jermusyk, A., Chung, C. C., Zhu, B., Zhou, W., Matters, G. L., Kurtz, R. C. ... Amundadottir, L. (2018). Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues. Gut, 67(3), 521-533. https://doi.org/10.1136/gutjnl-2016-313146

Jensen, M. M., Madsen, R. B., Becker, J., Iversen, B. B. & Glasius, M. (2017). Products of hydrothermal treatment of lignin and the importance of ortho-directed repolymerization reactions. Journal of Analytical and Applied Pyrolysis, 126, 371-379. https://doi.org/10.1016/j.jaap.2017.05.009

Barfod, A., Møller, I., Christiansen, A. V., Høyer, A.-S., Hoffimann, J., Straubhaar, J. & Caers, J. (2018). Hydrostratigraphic modeling using multiple-point statistics and airborne transient electromagnetic methods. Hydrology and Earth System Sciences, 22(6), 3351-3373. Article 413. https://doi.org/10.5194/hess-2017-413

Jensen, M. M., Madsen, R. B., Becker, J., Iversen, B. B. & Glasius, M. (2017). Characterization of De- and Repolymerization Products from Lignin Hydrothermal Treatment by Analytical Pyrolysis. Abstract from European Biomass Conference & Exhibition, Stockholm, Sweden. http://www.etaflorence.it/proceedings/

Andersen, J. E. & Petersen, W. (2018). Asymptotic expansions of the Witten-Reshetikhin-Turaev Invariants of Mapping Tori I. https://arxiv.org/pdf/1803.09510.pdf

Braun, S., Mhatre, S. S., Jaussi, M., Røy, H., Kjeldsen, K. U., Pearce, C., Seidenkrantz, M.-S., Jørgensen, B. B. & Lomstein, B. A. (2017). Microbial turnover times in the deep seabed studied by amino acid racemization modelling. Scientific Reports, 7(1), Article 5680. https://doi.org/10.1038/s41598-017-05972-z

Albo, M. J., Macias-Hernandez, N., Bilde, T. & Toft, S. (2017). Mutual benefit from exploitation of female foraging motivation may account for the early evolution of gifts in spiders. Animal Behaviour, 129(July), 9-14. https://doi.org/10.1016/j.anbehav.2017.05.001

Olsen, S., Cao, Y., Florencia Gutierrez, M., Brucet Balmana, S., Landkildehus, F., Lauridsen, T. L., Davidson, T. A., Søndergaard, M., Jeppesen, E. & Risgaard-Petersen, N. (2017). Effect of a nitrogen pulse on ecosystem N processing at different temperatures: A mesocosm experiment with ¹⁵NO₃ ⁻ addition. Freshwater Biology Online, 62(7), 1232-1243. https://doi.org/10.1111/fwb.12940

Cheng, J. Y., Mailund, T. & Nielsen, R. (2017). Fast admixture analysis and population tree estimation for SNP and NGS data. Bioinformatics (Online), 33(14), 2148–2155. https://doi.org/10.1093/bioinformatics/btx098

Leppälä, K., Nielsen, S. & Mailund, T. (2017). admixturegraph: an R package for admixture graph manipulation and fitting. Bioinformatics (Online), 33(11), 1738-1740. https://doi.org/10.1093/bioinformatics/btx048

Mailund, T. (2017). Beginning Data Science in R: Data Analysis, Visualization, and Modelling for the Data Scientist. Apress.

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Anne Kirstine Mehlsen