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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Nielsen, J., Grønbæk, K. & Lykke-Olesen, A. (2005). Vision Based Simultaneous Multi Object Tracking on Semi-Transparent Surfaces. (Patent No. PA 2005 00795).
Poulsen, U. V., Meyer, T. & Lewenstein, M. (2005). Entanglement in the Bogoliubov vacuum. Physical Review A, 71, 063605.
Eckert, K., Hyllus, P., Bruss, D., Poulsen, U. V., Lewenstein, M., Jentsch, C., Mueller, T., Rasel, E. M. & Ertmer, W. (2006). Differential atom interferometry beyond the standard quantum limit. Physical Review A, 73(1).
Damgård, I. B., Salvail, L., Schaffner, C. & Fehr, S. (2005). Cryptography In The Bounded Quantum-Storage Model. In Proceedings of the 46th Annual IEEE Symposium on Foundations of Computer Science (pp. 449-458). IEEE. https://doi.org/10.1109/SFCS.2005.30
Berglund, L., Petersen, T. E., Fedosov, S. N., Nexø, E., Laursen, N. B. & Jensen, E. Ø. (2003). Transgenic plants expressing cobalamin. (Patent No. PCT WO 03/006661 A2).
Dalum, I., Duch, M., Hindersson, P., Jensen, M. R., Lund, A. H., Mouritsen, S., Pedersen, F. S., Sørensen, M. S. & Mouritzen, S. (2000). Identifying biologically active peptide(s) and nucleic acids - by transducing vectors contg. random DNA sequences into cells and screening for altered phenotypic trait. (Patent No. ES 1511 67-T3, WO 9638 553-A1, AU 9658 933-A, EP 8322 07-A1, AU 6995 68-B, JP 115057 24-W, KR9902 2157, EP 832207 -B1, EP1041 143-A2, DE 696103 10-E).
Erfle, V., Gimbel, W., Østergaard, M., Pedersen, F. S., Pedersen, L., Schmidt, J., Strauss, P. & Østergaard, M. (2000). RFB-14 retrovirus genome- and prodn. of osteo-inductive protein. (Patent No. DE 4411 718-A1, EP 7554 48-A1, WO 9527 063-A2, AU 9523 050-A, WO 9527 063-A3).
Jensen, E. Ø., Petersen, T., Nexø, E., Berglund, L. E., Fedosov, S. & Laursen, N. B. (2002). Expression of cobalamin binding proteins in transgenic plants. (Patent No. GB2377446).
Jensen, M. R., Pedersen, F. S., Mouritsen, S., Hinderson, P., Duch, M., Sørensen, M. S., Dalum, I. & Lund, A. H. (1999). A method for identification of biologically active peptides and nucleic acids. (Patent No. PCT/DK 96/00231, WO96/38553).
Steitz, T. A., Moore, P. B., Ban, N., Nissen, P. & Hansen, J. (2000). The determination and uses of the atomic structure of ribosomes and ribosomal subunits. (Patent No. US CR1079).
Stougaard, J. (2004). Nod-factor perception. (Patent No. P200300646WO).
Sørensen, E. S., Burling, H., Bøttcher, K., Bertelsen, H., Albertsen, K., Graverholt, G., Jørgensen, A. S. & Schack, L. (2003). Infant formula. (Patent No. PA 200301353).
Sørensen, E. S., Ostersen, S., Chatterton, D., Holst, H. H. & Albertsen, K. (2003). A process for isolation of osteopontin from milk. (Patent No. WO 0149741A2).
Berglund, L. E., Petersen, T. E., Fedosov, S., Nexø, E., Laursen, N. B. & Jensen, E. Ø. (2001). Transgenic plants expressing B12 binding proteins. (Patent No. GB0117171.9).
Jensen, J. L. & Hein, J. (2005). Gibbs sampler for statistical multiple alignment. Statistica Sinica, 15(4), 889-907.
Usher, P. A., Thomsen, O. F., Iversen, P., Johnsen, M., Brünner, N., Høyer-Hansen, G., Andreasen, P., Danø, K. & Nielsen, B. S. (2005). Expression of urokinase plasminogen activator, its receptor and type-1 inhibitor in benign and malignant prostatic tissue. J. Cancer, 113, 870-880.
Jensen, J. L., Lunter, G., Miklos, I., Drummond, A. & Hein, J. (2005). Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinformatics, (6:83).
Jensen, J. L. & Hobolth, A. (2005). Statistical inference in evolutionary models of DNA sequences via the EM algorithm. Statistical Applications in Genetics and Molecular Biology, 4(1), article18.
Fynbo, J. P. U., Gorosabel, J., Smette, A., Fruchter, A., Hjorth, J., Pedersen, K., Levan, A., Burud, I., Sahu, K., Vreeswijk, P. M., Bergeron, E., Kouveliotou, C., Tanvir, N., Thorsett, S. E., Wijers, R. A. M. J., Castro Cerón, J. M., Garnavich, P., Holland, S. T., Jakobsson, P. ... Woosley, S. (2005). On the afterglow and host galaxy of GRB 021004: A comprehensive study with the Hubble Space Telescope. Astrophysical Journal, 633, 317-327.
Jakobsson, P., Björnsson, G., Fynbo, J. P. U., Jóhannesson, G., Hjorth, J., Thomsen, B., Møller, P., Watson, D., Jensen, B. L., Östlin, G., Gorosabel, J. & Gudmundsson, E. H. (2005). Ly+ and ultraviolet emission from high-redshift gamma-ray burst hosts: to what extent do gamma-ray bursts trace star formation ? Royal Astronomical Society. Monthly Notices, 362, 245-251.
Jørgensen, J. B. & Lassen, K. B. (2006). Aligning Work Processes and the Adviser Portal Bank System. In Proceedings of the 13th Annual IEEE International Symposium and Workshop on Engineering of Computer Based Systems: RENBITA 2005 (pp. 259 - 268). IEEE Computer Society Press.
Kragh, H. (2005). Science. In M. C. Horowitz (Ed.), New Dictionary of the History of Ideas (Vol. 5, pp. 2176-2178). Charles Scribner’s Sons.
Kragh, H. (2005). Relativitet og relativisme. Weekendavisen, 3.

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Schreiber, L. (2014). Metagenomic analysis of microbial communities and beyond. In T. L. Skovhus, S. M. Caffrey & C. R. J. Hubert (Eds.), Applications of Molecular Microbiological Methods (pp. 155-169). Caister Academic Press. http://www.horizonpress.com/ammm
Duan, Y.-F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, S. J., Elsgaard, L., Petersen, S. O. & Boon, N. (2014). Methanotrophs, methanogens, and microbial community structure in livestock slurry surface crusts. Journal of Applied Microbiology, 117(4), 1066-1078. https://doi.org/10.1111/jam.12584
Gearheart, G., Kooyman, G. L., Goetz, K. T. & McDonald, B. (2014). Migration front of post-moult emperor penguins. Polar Biology, 37(3), 435-439. https://doi.org/10.1007/s00300-014-1449-2
Signore, A. V., Paijmans, J., Hofreiter, M., Weber, R. E., Fago, A. & Campbell, K. L. (2014). Molecular and functional evolution of hemoglobin in sirenians. Abstract from XVIII Conference on Oxygen-Binding and Sensing Proteins, Sheffield, United Kingdom.
Ling, M., Santl-Temkiv, T., Finster, K. & Boesen, T. (2014). Molecular and physical characterization of bacterial ice nucleation proteins provide an insight into their biosignature potential.. Poster session presented at Joint Meeting of the Nordic Network of Astrobiology and the Centre of Geobiology, University of Bergen, Bergen, Norway.
Phillips, K. P., Mortimer, J. A., Jolliffe, K. G., Jorgensen, T. H. & Richardson, D. S. (2014). Molecular techniques reveal cryptic life history and demographic processes of a critically endangered marine turtle. Journal of Experimental Marine Biology and Ecology, 455, 29-37. https://doi.org/10.1016/j.jembe.2014.02.012
Jensen, K. W. & Toft, S. (2014). Mønstre i løbebille- og rovbille-faunaen i jyske naturskove. Flora & fauna : årsskrift for Jydsk Naturhistorisk Forening, 119(3/4), 77-96.
Funch, P. & Thybring, M. (2014). Morphology and ontogeny of the pectines of Babycurus jacksoni (Scorpiones: Buthidae). Poster session presented at International Congress on Invertebrat Morphology, Berlin, Germany. http://www.icim3.org/posters.htm
Hebets, E. A., Aceves-Aparicio, A., Aguilar-Argüello, S., Bingman, V. P., Escalante, I., Gering, E. J., Nelsen, D. R., Rivera, J., Sánchez-Ruiz, J. Á., Segura-Hernández, L., Settepani, V., Wiegmann, D. D. & Stafstrom, J. A. (2014). Multimodal sensory reliance in the nocturnal homing of the amblypygid Phrynus pseudoparvulus (Class Arachnida, Order Amblypygi)? Behavioural Processes, 108, 123-130. https://doi.org/10.1016/j.beproc.2014.09.014
Brunbjerg, A. K., Cavender-Bares, J., Eiserhardt, W. L., Ejrnæs, R., W. Aarssen, L., L. Buckley, H., Forey, E., Jansen, F., Kattge, J., Lane, C., A. Lubke, R., T. Moles, A., Laura Monserrat, A., K. Peet, R., Roncal, J., Wootton, L. & Svenning, J.-C. (2014). Multi-scale phylogenetic structure in coastal dune plant communities across the globe. Journal of Plant Ecology, 7(2), 101-114. https://doi.org/10.1093/jpe/rtt069
Nielsen, M. G. (2014). Myrerne og mennesket. In 25 Søforklaringer: Naturvidenskabelige fortællinger fra Søauditorierne (pp. 209-221). Aarhus Universitetsforlag.
Eller, F. & Hyldgaard, B. (2014). Når planter invaderer i det skjulte. Aktuel Naturvidenskab, (5), 38-41.
Olesen, J. M. (2014). Netværk og agurker med Bourbon whiskey. In C. Rabæk Kjaer (Ed.), 25 søforklaringer: naturvidenskabelige fortællinger fra Søauditorierne (pp. 148-161). Aarhus Universitetsforlag.
Tsirogiannis, C., Sandel, B. S. & Kalvisa, A. (2014). New Algorithms for Computing Phylogenetic Biodiversity. In D. Brown & B. Morgenstern (Eds.), Algorithms in Bioinformatics: 14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings (pp. 187-203). Springer VS. https://doi.org/10.1007/978-3-662-44753-6_15
Aubeneau, A., Tank, J., Reisinger, A., Riis, T., Levi, P. S. & Bolster, D. (2014). New take on old questions: The Intersection of nutrient spiraling and transient storage in fluvial systems. Abstract from Joint Aquatic Sciences Meeting, Portland, Oregon, United States.
Jensen, F. B., Hansen, M. N., Montesanti, G. & Wang, T. (2014). Nitric oxide metabolites during anoxia and reoxygenation in the anoxia-tolerant vertebrate Trachemys scripta. Journal of Experimental Biology, 217, 423-431. https://doi.org/10.1242/jeb.093179
Simon, K., El-Sabaawi, R., Dodds, W. K., Tank, J., Riis, T. & Marti, E. (2014). Nitrogen turnover rates in consumers determined from whole streams 15-N tracer additions. Abstract from Joint Aquatic Sciences Meeting, Portland, Oregon, United States.
van Heerwaarden, B., Lee, R. F. H., Overgaard, J. & Sgró, C. (2014). No patterns in thermal plasticity along a latitudial gradient in Drosophila simulans from eastern Australia. Journal of Evolutionary Biology, 27(11), 2541-2553. https://doi.org/10.1111/jeb.12510
Servedio, M. R., Brandvain, Y., Dhole, S., Fitzpatrick, C. L., Goldberg, E. E., Stern, C., Van Cleve, J. & Yeh, D. J. (2014). Not just a theory: the utility of mathematical models in evolutionary biology. PLoS Biology, 12, e1002017. http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002017
Janetski, D. J., Chaloner, D. T., Moerke, A. H., Levi, P. S. & Lambertini, G. A. (2014). Novel environmental conditions alter subsidy and engineering effects by introduced Pacific salmon. Canadian Journal of Fisheries and Aquatic Sciences, 71(4), 502-513. https://doi.org/10.1139/cjfas-2013-0292
Dalsgaard, T., Stewart, F. J., Thamdrup, B., De Brabandere, L., Revsbech, N. P., Ulloa, O., Canfield, D. E. & DeLong, E. F. (2014). Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off Northern Chil. mBio (Online), 5(6), 1-14. Article e01966-14. https://doi.org/10.1128/mBio.01966-14
Damsgaard, C., Huong, D. T. T., Wang, T. & Bayley, M. (2014). Oxygen Binding Characterization in Hemoglobin of Pangasianodon hypophthalmus. Abstract from Aquaculture and Environment, Can Tho , Viet Nam.
Stephansen, D. A., Nielsen, A. H., Hvitved-Jacobsen, T., Arias, C. A., Brix, H. & Vollertsen, J. (2014). PAH distribution between sediment, plants and water-dwelling fauna from stormwater ponds. In SWS European chapter WETLANDS BIODIVERSITY AND SERVICES: TOOLS FOR SOCIO-ECOLOGICAL DEVELOPMENT
Moraes R., M., Paniagua-Zambrana, N., Cámara-Leret, R., Balslev, H. & Macia, M. J. (2014). Palmas útiles de Bolivia, Colombia, Ecuador y Perú. In H. Balslev, M. J. Macía & H. Navarrete (Eds.), Cosecha de palmas en el noroeste de Sudamérica – las bases científicas para su manejo y conservación Pontificia Universidad Católica del Ecuador.
Alvarado-Segura, A. A., Calvo-Irabién, L. M. & Balslev, H. (2014). Palms of the Eastern Yucatan Peninsula, Mexico: Changes along a rainfall gradient. Palms, 58(2), 77-85.
Holm Pedersen, L., Riis, T. & Andersen, S. (2014). Pelagisk næringsstofoptag i Gudenåen. Poster session presented at Ferskvandssymposium 2014 , Horsens, Denmark.
Schaad, D. A., Pulido, F., López-Sáez, J. A., Sánchez, F. A., Lugilde, D. N., Múgica, F. F., Díaz, S. P., Zapata, M. B. R., García, M. J. G. & Valiño, M. D. (2014). Persistence of tree relicts in the Spanish central system through the holocene. Lazaroa, 35, 107-131. https://doi.org/10.5209/rev_LAZA.2014.v35.41932
Nogués-Bravo, D., Pulido, F., Araújo, M. B., Diniz-Filho, J. A. F., García-Valdés, R., Kollmann, J., Svenning, J.-C., Valladares, F. & Zavala, M. A. (2014). Phenotypic correlates of potential range size and range filling in European trees. Perspectives in Plant Ecology, Evolution and Systematics, 16(5), 219–227. https://doi.org/10.1016/j.ppees.2014.05.005
Utz, M., Jeschke, J. M., Loeschcke, V. & Gabriel, W. (2014). Phenotypic plasticity with instantaneous but delayed switches. Journal of Theoretical Biology, 340, 60-72. https://doi.org/10.1016/j.jtbi.2013.08.038
Damsgaard, C., Gam, L. T. H., Thinh, P. V., Huong, D. T. T., Wang, T. & Bayley, M. (2014). pH regulation during hypercapnia in striped catfish. Abstract from 11th International Congress on the Biology of Fish, Edinburgh, United Kingdom.