Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Arge, L., Bender, M. A., Demaine, E. D. & Munro, J. I. (2007). Cache-Oblivious Priority Queue and Graph Algorithm Applications. S I A M Journal on Computing, 36(6), 1672-1695. https://doi.org/10.1145/509907.509950

Arge, L. & Zeh, N. (2010). External-Memory Algorithms and Data Structures: General concepts and techniques. In M. J. Atallah & M. Blanton (Eds.), Algorithms and Theory of Computation Handbook (second edition) CRC Press.

Arge, L., Brodal, G. S. & Satti, S. R. (2008). External Memory Planar Point Location with Logarithmic Updates. In M. Teilaud (Ed.), Proceedings of the twenty-fourth annual symposium on Computational geometry (pp. 139-147). Association for Computing Machinery. https://doi.org/10.1145/1377676.1377699

Arge, L., Cachin, C., Jurdzinski, T. & Tarlecki, A. (Eds.) (2007). Proceedings of 34th International Colloquium on Automata, Language and Programming. ICALP'07. Springer.

Arge, L., Hoffmann, M. & Welzl, E. (Eds.) (2007). Algorithms - ESA 2007: 15th Annual European Symposium, Eilat, Israel, October 8-10, 2007. Proceedings. Springer. Lecture Notes in Computer Science Vol. 4698 https://doi.org/10.1007/978-3-540-75520-3

Arge, L. & Freivalds, R. M. (Eds.) (2006). Algorithm Theory - SWAT 2006: 10th Scandinavian Workshop on Algorithm Theory, Riga, Latvia, July 6-8, 2006. Proceedings. Springer. Lecture Notes in Computer Science Vol. 4059

Arge, L., de Berg, M. & Haverkort, H. (2005). Cache-Oblivious R-trees. In J. Mitchell & G. Rote (Eds.), Proceedings of 21th ACM Symposium on Computational Geometry (pp. 170-179). Association for Computing Machinery.

Danvy, O. & Millikin, K. (2009). Refunctionalization at Work. Science of Computer Programming, 74(8), 534-549. https://doi.org/10.1016/j.scico.2009.02.001

Danvy, O. & Millikin, K. (2008). On the equivalence between small-step and big-step abstract machines: a simple application of lightweight fusion. Information Processing Letters, 106(3), 100-109.

Danvy, O. & Millikin, K. (2007). On One-Pass CPS Transformations. Journal of Functional Programming, 17(6), 793-812.

Hansen, K. A. (2007). Computing Symmetric Boolean Functions by Circuits with Few Exact Threshold Gates. In G. Lin (Ed.), Computing and Combinatorics: 13th Annual International Conference, COCOON 2007, Banff, Canada, July 16-19, 2007. Proceedings (pp. 448-458). Springer. https://doi.org/10.1007/978-3-540-73545-8_44

Caspersen, M. E., Alphonce, C. & Decker, A. (2007). Killer "Killer Examples" for Design Patterns. ACM Inroads, 39(1), 228-232. https://doi.org/10.1145/1227504.1227390

Bennedsen, J. & Caspersen, M. E. (2008). Optimists Have More Fun, But Do They Learn Better? On the Influence of Emotional and Social Factors on Learning CS and Math. Computer Science Education, 18(1), 1-16. https://doi.org/10.1080/08993400701791133

Caspersen, M. E., Bennedsen, J. & Larsen, K. D. (2007). Mental Models and Programming Aptitude. ACM Inroads, 39(3), 206-210. https://doi.org/10.1145/1269900.1268845

Caspersen, M. E., Börstler, J. & Nordström, M. (2007). Beauty and the Beast: Toward a Measurement Framework for Example Program Quality. Department of Computing Science, Umeå University, Sweden.

Bennedsen, J. & Caspersen, M. E. (2007). Failure Rates in Introductory Programming. ACM Inroads, 39(2), 32-36. https://doi.org/10.1145/1272848.1272879

Caspersen, M. E. & Bennedsen, J. (2007). Instructional Design of a Programming Course: A Learning Theoretic Approach. In Proceedings of the Third International Workshop on Computing Education Research (pp. 111-122). Association for Computing Machinery. https://doi.org/10.1145/1288580.1288595

Weyer, K., Boldt, H. B., Poulsen, C. B., Kjaer-Sorensen, K., Gyrup, C. & Oxvig, C. (2007). A substrate specificity-determining unit of three Lin12-Notch repeat modules is formed in trans within the pappalysin-1 dimer and requires a sequence stretch C-terminal to the third module. Journal of Biological Chemistry, 282(15), 10988-99. https://doi.org/10.1074/jbc.M607903200

Jørgensen, J.-E. & Keller, L. (2008). Magnetic ordering in HoBaCo₂O_5.5. Physical Review B, 77, 24427-1-7.

Christensen, A. N., Jensen, T. R., Bahl, C. R. H. & DiMasi, E. (2007). Nano size crystals of goethite, α-FeOOH: Synthesis and thermal transformation. Journal of Solid State Chemistry, 180, 1431-1435.

Zande, L. V. D., Vliet, M. V. D., Pertoldi, C., Loeschcke, V., Müskens, G. & Bijlsma, R. (2007). Genetic structure within and among regional populations of the Eurasian badger (Meles meles) from Denmark and the Netherlands. Journal of Zoology, 271, 302-309. https://doi.org/10.1111/j.1469-7998.2006.00206.x

Nielsen, R. K., Pertoldi, C. & Loeschcke, V. (2007). Genetic evaluation of the captive breeding program of the Persian wild ass. Journal of Zoology, 272, 349-357. https://doi.org/10.1111/j.1469-7998.2007.00294.x

Hájková, P., Pertoldi, C., Ukendt, Z., Roche, K., Hájek, B., Bryja, J. & Zima, J. (2007). Genetic structure and evidence for recent population decline in Eurasian otter populations in the Czech and Slovak Republics: implications for conservation. Journal of Zoology, 272, 1-9. https://doi.org/10.1111/j.1469-7998.2006.00259.x

Barkhordarian, G., Jensen, T. R., Doppiu, S., Bösenberg, U., Borgschulte, A., Gremaud, R., Cerenius, Y., Dornheim, M., Klassen, T. & Bormann, R. (2008). Formation of Ca(BH₄)₂ from Hydrogenation of CaH₂ + MgB₂ Composite. Journal of Physical Chemistry Part C: Nanomaterials and Interfaces, 112, 2743-2749.

Hoffmann, HJ., Tabaksblat, LM., Enghild, J. J. & Dahl, R. (2008). Human skin keratins are the major proteins in exhaled breath condensate. European Respiratory Journal.

Gunnlaugsson, H. P., Merrison, J. P., Mossin, L. A., Nørnberg, P., Sanden, J., Uggerhøj, E. & Weyer, G. (2002). Can Mössbauer spectroscopy reveal the origin of magnetic soil in Denmark. Proceedings of the 5th Seeheim conf. on Mössbauer spec.

Damgaard, C. K., Kahns, S., Lykke-Andersen, S., Nielsen, A. L., Jensen, T. H. & Kjems, J. (2008). A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo. Molecular Cell, 29(2), 271-278. https://doi.org/10.1016/j.molcel.2007.11.035, https://doi.org/10.1016/j.molcel.2007.11.035

Staudt Kvistgaard, A., Sørensen, E. S. & Burling, H. (2007). Bovine osteopontin formulations for the improvement of the wound healing process. (Patent No. WO 2007/068252 A2).

Christensen, B., Petersen, T. E. & Sørensen, E. S. (2008). Posttranslational modification and proteolytic processing of urinary osteopontin. Biochemical Journal, 411, 53-61.

Hunter, G. K., Grohe, B., Jeffrey, S., O’Young, J., Sørensen, E. S. & Goldberg, H. A. (2009). Role of phosphate groups in inhibition of calcium oxalate crystal growth by osteopontin. Cells, Tissues, Organs, 189, 44-50.

Kristensen, P., Ueda, H., Koijma, M., Ihara, M. & Kawakami, M. (2008). Open Sandwich ELISA Libraries. (Patent No. JP2008-032941).

Pertoldi, C., Bijlsma, R. & Loeschcke, V. (2008). Conservation genetics in a globally changing environment: present problems, paradoxes and future challenges. Biodiversity and Conservation, 16, 4147-4163.

Pertoldi, C., Bijlsma, R. & Loeschcke, V. (2007). Integrating population genetics and conservation biology: merging theoretical, experimental and applied approaches (Potsdam, Germany). Conservation Genetics, 8, 1267-1268.

Stavru, F., Nautrup-Pedersen, G., Cordes, V. C. & Görlich, D. (2006). Nuclear pore complex assembly and maintenance in POM121- and gp210-deficient cells. Journal of Cell Biology, 173(4), 477-83. https://doi.org/10.1083/jcb.200601002

Nautrup Pedersen, G., Nyborg, J. & Clark, B. F. (1999). Macromolecular mimicry of nucleic acid and protein. IUBMB Life, 48(1), 13-8.

Holm, H. (2007). Cohen-Macaulay homological dimensions. Rendiconti del Seminario Matematico della Università di Padova, 117, 87-112.

Klokmose, C. N. & Beaudouin-Lafon, M. (2008). From Applications to Ubiquitous Instrumental Interaction. In CHI '00: Proceedings of the SIGCHI conference on Human factors in computing systems (pp. 446-453). Association for Computing Machinery.

Berlin, R. & Klokmose, C. N. (2007). Undo in Dynamic and Distributed User Interfaces. Poster session presented at Danish HCI Research Symposium, DHRS 2007, København, Denmark.

Klokmose, C. N. (2007). Towards an Instrumental Paradigm for Ubiquitous Interaction. In A. C. Brodersen, S. Bødker & C. N. Klokmose (Eds.), Multiple and Ubiquitous Interaction, 28. - 30. March 2007: Book of Abstracts (pp. 33-35)

Klokmose, C. N. (2007). An Instrumental Paradigm for Ubiquitous Interaction. In Conference Proceedings of ECCE 2007 Association for Computing Machinery.

Klokmose, C. N. (2007). From a Theoretical Understanding to Practical Design of Ubiquitous User Interfaces. Progress Report: Progress Report.

Klokmose, C. N. (2008). An Instrumental Paradigm for Ubiquitous Interaction. In W. P. Brinkman, D. H. Ham & B. L. W. Wong (Eds.), ACM International Conference Proceeding Series; vol 250: Proceedings of the 14th European conference on Cognitive ergonomics: invent! explore! (Vol. 250, pp. 257-260). Association for Computing Machinery.

Knudsen, C. R., Mansilla, F., Nautrup Pedersen, G. & Clark, B. F. C. (1999). Point mutants of elongation factor Tu from E.coli impaired in binding aminoacyl-tRNA. In RNA Biochemistry and Biotechnology: Barciszewski, J., Clark, B.F.C. (ed.) (pp. 169-193). NATO ASI Series, Kluwer Academic Publishers.

Hubalek, F. & Sgarra, C. (2007). Quadratic hedging for the Bates model. International Journal of Theoretical and Applied Finance, 10(5), 873-885.

Mathiasen, N. R. (2007). Usable Security Revisited. Poster session presented at Danish HCI Research Symposium, DHRS 2007, København, Denmark.

Wang, Y., Thyssen, A., Westergaard, O. & Andersen, A. H. (2000). Position-specific effect of ribonucleotides on the cleavage activity of human topoisomerase II. Nucleic Acids Research, 28(24), 4815-21.

Jonstrup, A. T., Andersen, C. L., Wang, Y., Koch, J. & Andersen, A. H. (2001). Topoisomerase II interacts with hairpin structures formed within human centromeric DNA. Anticancer Research, 21(3A), 1555.

Madsen, I. & Weiss, M. (2007). The stable moduli space of Riemann surfaces: Mumford's conjecture. Annals of Mathematics, 165(3), 843-941. http://projecteuclid.org/euclid.annm/1191594071

Barndorff-Nielsen, O. E. & Maejima, M. (2008). Semigroups of Upsilon transformations. Stochastic Processes and Their Applications, 118(12), 2334-2343. https://doi.org/10.1016/j.spa.2008.01.003

Nautrup-Pedersen, G., Dam, S., Laursen, B. S., Siegumfeldt, A. L., Ørnfelt, J. H., Lorentzen, A. M., Roepstorff, P. & Stougaard, J. (2008). Proteomics of Lotus japonicus seeds and pod walls. Proteomica, (1), 118.

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Anne Kirstine Mehlsen