Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Mathiasen, N. R. (2009). It-security seen from a user experience perspective. Poster session presented at NordiCHI. Workshop on User centered Security., Lund, Sweden.

Arning, E. T., Birgel, D., Schultz-Vogt, H. N., Holmkvist, L., Jørgensen, B. B., Larson, A. & Peckmann, J. (2008). Lipid biomarker patterns of phosphogenic sediments from upwelling regions. Geomicrobiology Journal, 25, 69-82. https://doi.org/10.1080/01490450801934854

Lima, C. F., Dymek, B. & Rattan, S. (2008). Hormetic effects of curcumin in human skin fibroblasts. Poster session presented at 6th European Congress of Biogerontology, Noordwijkerhout, Netherlands.

Knab, N. J., Cragg, B. A., Borowski, C., Parkes, R. J., Pancost, R. & Jørgensen, B. B. (2008). Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): I. Geochemical and microbiological analyses. Geochimica et Cosmochimica Acta, 72, 2868-2879. https://doi.org/10.1016/j.gca.2008.03.016

Dale, A. W., Regnier, P., Knab, N. J., Jørgensen, B. B. & Cappellen, P. V. (2008). Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modeling. Geochimica et Cosmochimica Acta, 72, 2880-2894. https://doi.org/10.1016/j.gca.2007.11.039

Larsen, S. A., Rattan, S. & Kassem, M. (2008). Glyoxal induces accelerated ageing and inhibits osteoblastic differentiation of human bone marrow stem cells. Poster session presented at Glyoxal induces accelerated ageing and inhibits osteoblastic differentiation of human bone marrow stem cells, Noordwijkerhout, Netherlands.

Knab, N. J., Cragg, B. A., Hornibrook, E. R. C., Holmkvist, L., Borowski, C., Parkes, R. J. & Jørgensen, B. B. (2008). Regulation of anaerobic methane oxidation in sediments of the Black Sea. Biogeosciences Discussions, 5, 2305-2341.

Finke, N. & Jørgensen, B. B. (2008). Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments. I S M E Journal, 2, 815-829.

Khalili, A., Javadi, K., Saidi, A., Goharzadeh, A., Huettel, M. & Jørgensen, B. B. (2008). On generating uniform bottom shear stress. Part I: A quantitative study of microcosm chambers. Recent Patents on Chemical Engineering, 1, 174-191.

Nickel, M., Vandieken, V., Brüchert, V. & Jørgensen, B. B. (2008). Microbial Mn(IV) and Fe(III) reduction in northern Barents Sea sediments under different conditions of ice cover and organic carbon deposition. Deep-Sea Research. Part II: Topical Studies in Oceanography, 55, 2390-2398. https://doi.org/10.1016/j.dsr2.2008.05.003

Zopfi, J., Michael E., B. & Jørgensen, B. B. (2008). Biogeochemistry of sulfur and iron in Thioploca-colonized surface sediments in the upwelling area off central Chile. Geochimica et Cosmochimica Acta, 72, 827-843. https://doi.org/10.1016/j.gca.2007.11.031

Musat, N., Halm, H., Winterholler, B., Hoppe, P., Peduzzi, S., Hillion, F., Horreard, F., Amann, R., Jørgensen, B. B. & Kuypers, M. M. M. (2008). A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. Proceedings of the National Academy of Sciences (PNAS), 105(46), 17861-17866. https://doi.org/10.1073/pnas.0809329105

Thieltges, D. W., de Montaudouin, X., Fredensborg, B., Jensen, K. T., Koprivnikar, J. & Poulin, R. (2008). Production of marine trematode cercariae: a potentially overlooked path of energy flow in benthic systems. Marine Ecology Progress Series, 372, 147-155. https://doi.org/10.3354/meps07703

Lund-Hansen, L. C., Nielsen, M. H., Bruhn, A., Christiansen, C., Vang, T., Casado-Amezua, P., Richardson, K., Santaloria, L. & Nielsen, M. H. (2008). A consistent high primary production and chlorophyll-a maximum in a narrow strait - Effects of hydraulic control. Journal of Marine Systems, 74, 395-405. https://doi.org/10.1016/j.jmarsys.2008.03.005

Nielsen, M. H., Lund-Hansen, L. C., Erbs-Hansen, D. R. & Andersen, T. J. (2008). Klimaets fodspor i mudderet. Aktuel Naturvidenskab, 5, 9-11.

Simonsen, M. E., Jensen, H., Li, Z. & Søgaard, E. G. (2008). Surface properties and photocatalytic activity of nanocrystalline titania films. Journal of Photochemistry and Photobiology, A: Chemistry, 200, 192–200.

Bahari, A., Morgen, P. & Li, Z. (2008). Ultra thin silicon nitride films on Si(100) studied with core level photoemission. Surface Science, 602, 2315–2324.

Eberle, A., Lykke-Andersen, S., Mühlemann, O. & Jensen, T. H. (2009). SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells. Nature Structural and Molecular Biology, 16(1), 49-55.

Overgaard, J. & Sørensen, J. G. (2008). Rapid thermal adaptation during field temperature variations in Drosophila melanogaster. Cryobiology, 56(2), 159–162. https://doi.org/10.1016/j.cryobiol.2008.01.001

Magård, E. (2002). Possible mechanisms for the coexistence of congeneric (Pourouma, Cecropiaceae) Amazonian tree species. Ecotropica, 8(1), 15-22.

Klavsen, S. K. & Madsen, T. V. (2008). Effect of Leaf age on CAM activity in Littorella uniflora. Aquatic Botany, 89(1), 50-56.

Klavsen, S. K. & Maberly, S. C. (2009). Crassulacean acid metabolism contributes significantly to the in situ carbon budget in a population of the invasive aquatic macrophyte Crassula helmsii. Freshwater Biology, 54(1), 105-118.

Klavsen, S. K. & Madsen, T. V. (2006). Betydningen af Crassulacean Acid Metabolism (CAM) som kulstofkonserverende mekanisme i Littorella uniflora. Poster session presented at Ferskvandssymposium 2006, Århus, Denmark.

Klavsen, S. K. (2007). Ecophysiology of Crassula helmsii - an invasive aquatic species with Crassulacean Acid Metabolism (CAM). Poster session presented at Environmetal strategies and solutions, København, Denmark.

Kofoed, M. V. W., Mohanakrishnan, J., Schramm, A. & Meyer, R. L. (2008). Effect of nitrate on activity and community structure of a sulfidogenic wastewater biofilm. Poster session presented at 12th International Symposium on Microbial Ecology: Microbial Diversity - Sustaining the Blue Planet, Cairns, Australia.

Christensen, E. F., Schultz, P., Jensen, O. V., Egebo, K., Engberg, M., Grøn, I. & Juhl, B. (1991). Postoperative pulmonary complications and lung function in high-risk patients: a comparison of three physiotherapy regimens after upper abdominal surgery in general anesthesia. Acta Anaesthesiologica Scandinavica, 35(2), 97-104.

Ballegaard, S. A., Hansen, T. R. & Kyng, M. (2008). Healthcare in Everyday Life - Designing Healthcare Services for Daily Life. In Proceeding of the twenty-sixth annual SIGCHI conference on Human factors in computing systems (pp. 1807-1816). Association for Computing Machinery. https://doi.org/10.1145/1357054.1357336

Barndorff-Nielsen, O. E., Corcuera, J. M. & Podolskij, M. (2009). Power variation for Gaussian processes with stationary increments. Stochastic Processes and Their Applications, 119(6), 1845-1865. https://doi.org/10.1016/j.spa.2008.09.004

Stiehler, M., Baatrup, A., Lind, M., Kassem, M., Mygind, T. & Bünger, C. (2008). Effect of dynamic 3-D culture on proliferation, distribution, and osteogenic differentiation of human mesenchymal stem cells. Journal of Biomedical Materials Research. Part A, 89/1(96-107). https://doi.org/10.1002/jbm.a.31967

Stiehler, M., Lind, M., Mygind, T., Baatrup, A., Dolatshahi-Pirouz, A., Li, H., Foss, M., Besenbacher, F., Kassem, M. & Bünger, C. (2008). Morphology, proliferation, and osteogenic differentiation of mesenchymal stem cells cultured on titanium, tantalum, and chromium surfaces. Journal of Biomedical Materials Research. Part A, 86(2), 448-58. https://doi.org/10.1002/jbm.a.31602

Zou, X., Zou, L., Foldager, C., Bendtsen, M., Feng, W. & Bünger, C. (2008). Different mechanisms of spinal fusion using equine bone protein extract, rhBMP-2 and autograft during the process of anterior lumbar interbody fusion. Biomaterials, 30(6), 991-1004. https://doi.org/10.1016/j.biomaterials.2008.10.061

Hagemann, O., Bjerring, M., Nielsen, N. C. & Krebs, F. C. (2008). All solution processed tandem polymer solar cells based on thermocleavable materials. Solar Energy Materials & Solar Cells, 92(11), 1327-1335. https://doi.org/10.1016/j.solmat.2008.05.005

Klopper, A., Svaneborg, C. & Everaers, R. (2009). Microphase separation in cross-linked polymer blends Efficient replica RPA post-processing of simulation data for homopolymer networks. The European Physical Journal E: Soft Matter and Biological Physics, 28, 89-96. https://doi.org/10.1140/epje/i2008-10420-6

Karstoft, K., Lødrup, A. B., Dissing, T. H., Sørensen, T. S., Nyengaard, J. R. & Pedersen, M. (2007). Different strategies for MRI measurements of renal cortical volume. Journal of Magnetic Resonance Imaging, 26(6), 1564-71. https://doi.org/10.1002/jmri.21121

Danvy, O. & Johannsen, J. (2008). Inter-deriving Semantic Artifacts for Object-Oriented Programming. Lecture Notes in Computer Science, 1-16.

Lolck, M. L. (2007). Krig og Klima - historien om iskerneforskningen i Grønland. Biozoom, (3), 15-18.

Lolck, M. L. (2007). En ukomplet sandhed. Jyllands-Posten, 7.

Lolck, M. L. (2007). Klimaforandringer - fra kridttid til fremtid. In J. Hendriksen, E. Larsen, O. Laursen & A. Wiborg (Eds.), Klimakaravanen: - på vej mod en bedre fremtid? (pp. 10-11)

Lolck, M. L. (2007). Drivhuseffekten på godt og ondt. In J. Hendriksen, E. Larsen, O. Laursen & A. Wiborg (Eds.), Klimakaravanen: - på vej mod en bedre fremtid? (pp. 12-13)

Schiøler, P.-H., Andsbjerg, J., Clausen, O. R., Dam, G., Dybkær, K., Hamberg, L., Heilmann-Clausen, C., Johannesen, E. P., Kristensen, L. E., Prince, I. & Rasmussen, J. A. (2007). Lithostratigraphy of the Palaeogene - Lower Neogene succession of the Danish North Sea. Review of Survey Activities, 12, 1-77.

Kristensen, T. B., Huuse, M., Piotrowski, J. A. & Clausen, O. R. (2007). A morphometric analysis of tunnel valleys in the eastern North Sea based on 3D seismic data. Journal of Quaternary Science, 22(8), 801-815.

Lolck, M. L. (2007). The IGY and Greenland Ice Core Research. In Earth: Our Changing Planet. Proceedings of IUGG XXIV General Assembly Perugia, Italy 2007

Penn, O., Stern, A., Rubinstein, N. D., Dutheil, J., Bacharach, E., Galtier, N. & Pupko, T. (2008). Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes. PLoS Computational Biology, 4(11), e1000214. https://doi.org/10.1371/journal.pcbi.1000214

Dutheil, J. & Boussau, B. (2008). Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs. BMC Evolutionary Biology, 8, 255. https://doi.org/10.1186/1471-2148-8-255

Dutheil, J. (2008). Detecting site-specific biochemical constraints through substitution mapping. Journal of Molecular Evolution, 67(3), 257-65. https://doi.org/10.1007/s00239-008-9139-8

Nielsen, M. G., Christian, K. & Malte, H. (2009). Hypoxic conditions and oxygen supply in nests of the mangrove ant, Camponotus anderseni, during and after inundation. Insectes Sociaux, 56, 35-39. https://doi.org/10.1007/s00040-008-1029-y

Giuliani, A., Limão-Vieira, P., Duflot, D., Milosavljevic, A. R., Marinkovic, B. P., Hoffmann, S. V., Mason, N., Delwiche, J. & Hubin-Franskin, M.-J. (2009). Electronic states of neutral and ionized tetrahydrofuran studied by VUV spectroscopy and ab initio calculations. The European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics, 51(1), 97-108. https://doi.org/10.1140/epjd/e2008-00154-7

Li, J., Gromov, P., Gromova, I., Moreira, J. M., Timmermans-Wielenga, V., Rank, F., Wang, K., Li, S., Li, H., Wiuf, C., Yang, H., Zhang, X., Bolund, L. & Celis, J. E. (2008). Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis. Proteomics, 8(23-24), 5038-52. https://doi.org/10.1002/pmic.200800303

Wang, K., Li, J., Li, S., Bolund, L. & Wiuf, C. (2009). Estimation of tumor heterogeneity using CGH array data. BMC Bioinformatics, 10(1), 12. https://doi.org/10.1186/1471-2105-10-12

Kubala, D., Drage, E. A., Al-Faydhi, A. M. E., Kocísek, J., Papp, P., Matejcík, V., Mach, P., Urban, J., Limão-Vieira, P., Hoffmann, S. V., Matejcík, S. & Mason, N. J. (2009). Electron impact ionisation and UV absorption study of α- and ß-pinene. International Journal of Mass Spectrometry, 280(1-3), 169-173. https://doi.org/10.1016/j.ijms.2008.07.035

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