Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Frenck, G., Linden, L. G., Mikkelsen, T. N., Brix, H. & Bagger Jørgensen, R. (2012). Phenotypic divergence of ecophysiological traits under manipulated CO₂ and temperature conditions in Brassica napus over five generations. Paper presented at Annual Meeting og the Society of Experimental Biology (SEB) , Salzburg, Austria.

Temkiv, T. S., Finster, K., Dittmar, T., Hansen, B. M., Thyrhaug, R., Nielsen, N. W. & Karlson, U. G. (2012). Hailstones: a window into microbial life in storm clouds. Abstract from ISME Conference 2012, København, Denmark.

Spiewanowski, M. & Madsen, L. B. (2012). Nondipole effects in attosecond photoelectron streaking. Physical Review A, 86(4), 045401. https://doi.org/10.1103/PhysRevA.86.045401

Nielsen, J. H., Pentlehner, D. T. V., Mølmer, K., Slenczka, A. & Stapelfeldt, H. (2012). Alignment of molecules in helium droplets. Poster session presented at Gordon Research Conference on Multiphoton Processes, South Hadley, United States.

Tarpgaard, I. H., Røy, H., Kjeldsen, K. U., Finster, K. & Jørgensen, B. B. (2012). High affinity sulfate reduction kinetics in marine sediment. Abstract from ISME Conference 2012, København, Denmark.

Temkiv, T. S., Finster, K., Hansen, B. M., Pasic, L. & Karlson, U. G. (2012). Atmospheric methane oxidation by airborne methanotrophic bacteria at cloudlike conditions. Abstract from ISME Conference 2012, København, Denmark.

Thomsen, J. G., Ernst, E., Brabrand, C. & Schwartzbach, M. I. (2012). WebSelF: A Web Scraping Framework . Lecture Notes in Computer Science, 7387, 347-361. https://doi.org/10.1007/978-3-642-31753-8_28

Bøggild, A., Sofos, N., Andersen, K. R., Feddersen, A., Easter, A. D., Passmore, L. A. & Brodersen, D. (2012). The Crystal Structure of the Intact E. coli RelBE Toxin-Antitoxin Complex Provides the Structural Basis for Conditional Cooperativity. Structure, 20(10), 1641–1648. https://doi.org/10.1016/j.str.2012.08.017

Korn, M. & Bødker, S. (2012). Looking ahead – How field trials can work in iterative and exploratory design of ubicomp systems. In UbiComp '12 : Proceedings of the 2012 ACM Conference on Ubiquitous Computing (pp. 21-30). Association for Computing Machinery. https://doi.org/10.1145/2370216.2370221

Micenková, B., van Beusekom, J. & Shafait, F. (2012). Stamp Verification for Automated Document Authentication. Paper presented at International Workshop on Computational Forensics , Tsukuba, Japan.

Andersen, H. (2012). Conceptual development and dynamic realism. Studie Philosophical Estonia, 5(2), 133-151.

Andersen, H. & Wagenknecht, S. (2013). Epistemic dependence in interdisciplinary groups. Synthese, 190(11), 1881-1898. https://doi.org/10.1007/s11229-012-0172-1

Andersen, H. (2012). The Second Essential Tension: On Tradition and Innovation in Interdisciplinary Research. Topoi, 32(1), 3-8. https://doi.org/10.1007/s11245-012-9133-z

Andersen, H. (2012). Concepts and Conceptual Change. In V. Kindi & T. Arabatzis (Eds.), Kuhn's The Structure of Scientific Revolutions Revisited Routledge.

Andersen, H. (2012). Conceptual development in interdisciplinary research. In U. Feest & F. Steinle (Eds.), Scientific concepts and investigative practice: Berlin Studies in Knowledge Research (Vol. 3, pp. 271-292). De Gruyter.

Andersen, H. (2008). History and philosophy of modern epidemiology. http://philsci-archive.pitt.edu/4159/

Andersen, H. (2008). Demarcating misconduct from misinterpretations and mistakes. http://philsci-archive.pitt.edu/4153/

Andersen, H. (2013). Interdisciplinarity. In W. Dubitzky, O. Wolkenhauer , H. Yokota & K.-H. Cho (Eds.), Encyclopedia of Systems Biology (pp. 1042-1044). Springer.

Andersen, H. & Green, S. (2013). Theory-ladenness. In W. Dubitzky, O. Wolkenhauer, H. Yokota & K.-H. Cho (Eds.), Encyclopedia of Systems Biology Springer.

Andersen, H. (2010). Review of E.H.G. Hung: Beyond Kuhn. British Journal for the Philosophy of Science, 61.

Andersen, H. & Hepburn, B. (2013). Scientific Change. http://www.iep.utm.edu/s-change/

Andersen, H. (2013). Bridging disciplines: Conceptual development in interdisciplinary groups. In H. Fangerau, H. Geisler, T. Halling & W. Martin (Eds.), Classification and Evolution in Biology, Linguistics and the History of Science: Concepts – Methods – Visualization (Vol. 5, pp. 33-44). Franz Steiner Verlag.

Clausen, J. D., Vandecaetsbeek, I., Wuytack, F., Vangheluwe, P. & Andersen, J. P. (2012). Distinct Roles of the C-terminal 11th Transmembrane Helix and Luminal Extension in the Partial Reactions Determining the High Ca2+ Affinity of Sarco(endo)plasmic Reticulum Ca2+-ATPase Isoform 2b (SERCA2b). Journal of Biological Chemistry, 287(47), 39460-39469. https://doi.org/10.1074/jbc.M112.397331

Henneberg, A., Sorrell, B. K. & Brix, H. (2012). Internal methane transport through Juncus effusus: experimental manipulation of morphological barriers to test above- and below-ground diffusion limitation. New Phytologist, 198(3), 799-806. https://doi.org/10.1111/j.1469-8137.2012.04303.x

Kristiansen, S. M. & Heinemeier, J. (2013). Radiocarbon dating of Skelhøj and adjacent features. In M. K. Holst & M. Rasmussen (Eds.), Skelhøj and the South Scandinavian Bronze Age Barrows: Vol. 1. The Bronze Age Barrow Tradition and the Excavation of Skelhøj (pp. 145-154). Jysk Arkæologisk Selskab.

Kristiansen, S. M. (2012). Dræn halter efter nedbør: Ugens kronik. Ingeniøren, 12. http://ing.dk/artikel/132741-forsoemte-draen-oeger-udvaskning-af-naeringsstoffer

Kibsgaard, J., Chen, Z., Reinecke, B. N. & Jaramillo, T. F. (2012). Engineering the surface structure of MoS2 to preferentially expose active edge sites for electrocatalysis. Nature Materials, 11, 963–969. https://doi.org/10.1038/nmat3439

Vierna, J., Jensen, K. T., Gonzalez-Tizon, A. M. & Martinez-Lage, A. (2012). Population genetic analysis of Ensis directus unveils high genetic variation in the introduced range and reveals a new species from the NW Atlantic. Marine Biology, 159, 2209-2227.

Krakau, M., Jacobsen, S., Jensen, K. T. & Reise, K. (2012). The cockle Cerastoderma edule at Northeast Atlantic shores: genetic signatures of glacial refugia. Marine Biology, 159, 221-230. https://doi.org/10.1007/s00227-011-1802-8

Henneberg, A., Sorrell, B. K. & Brix, H. (2012). The role of internal gas transport in Juncus effusus for methane emissions from drained peatlands. Poster session presented at EUROSOIL 2012. Soil Science for the Benefit of Mankind and Environment. 4th International Congress of the European Confederation of Soil Science Societies (ECSSS), 2-6 July, Bari – Italy, Bari, Italy.

Merzouk, A., Krause-Jensen, D. & Olesen, B. (2012). Population dynamics and canopy architecture of the brown alga Ascophyllum nodosum along environmental gradients in Western Greenland. Abstract from Benthic Ecology Meeting, Nordfolk, Virginia, United States. http://sci.odu.edu/bem/docs/AllOralAbstractsBEM2012.pdf

Kellermann, V., Overgaard, J., Hoffmann, A. A., Fløjgaard, C., Svenning, J.-C. & Loeschcke, V. (2012). Upper thermal limits of Drosophila are linked to species distributions and strongly constrained phylogenetically. Proceedings of the National Academy of Sciences (PNAS), 109(40), 16228-16233. https://doi.org/10.1073/pnas.1207553109

Grispo, M. T., Natarajan, C., Projecto-Garcia, J., Moriyama, H., Weber, R. E. & Storz, J. F. (2012). Gene duplication and the evolution of hemoglobin isoform differentiation in birds. Journal of Biological Chemistry, 287, 37647-37658. https://doi.org/10.1074/jbc.M112.375600

Andersen, K. K., Wang, H. & Otzen, D. (2012). A Kinetic Analysis of the Folding and Unfolding of OmpA in Urea and Guaninidinium Chloride: Single and Parallel Pathways. Biochemistry, 51(42), 8371-8383. https://doi.org/10.1021/bi300974y

Calcutta, A., Jessen, C. M., Behrens, M. A., Oliveira, C. L. P., Renart, M. L., González-Ros, J. M., Otzen, D., Pedersen, J. S., Malmendal, A. & Nielsen, N. C. (2012). Mapping of unfolding states of integral helical membrane proteins by GPS-NMR and scattering techniques: TFE-induced unfolding of KcsA in DDM surfactant. Biochimica et biophysica acta - Biomembranes, 1818(9), 2290-301. https://doi.org/10.1016/j.bbamem.2012.04.005

Weber, M., Tome, L., Otzen, D. & Schneider, D. (2012). A Ser residue influences the structure and stability of a Pro-kinked transmembrane helix dimer. BBA General Subjects, 1818(9), 2103-7. https://doi.org/10.1016/j.bbamem.2012.04.003

Macchi, F., Eisenkolb, M., Kiefer, H. & Otzen, D. (2012). The effect of osmolytes on protein fibrillation. International Journal of Molecular Sciences (Online), 13(3), 3801-3819. https://doi.org/10.3390/ijms13033801

Otzen, D., Blans, K., Wang, H., Gilbert, G. E. & Rasmussen, J. T. (2012). Lactadherin binds to phosphatidylserine-containing vesicles in a two-step mechanism sensitive to vesicle size and composition. BBA General Subjects, 1818(4), 1019-1027. https://doi.org/10.1016/j.bbamem.2011.08.032

Bertelsen, K., Vad, B., Nielsen, E. H. T., Hansen, S. K., Skrydstrup, T., Otzen, D., Vosegaard, T. & Nielsen, N. C. (2011). Long-term-stable ether-lipid vs conventional ester-lipid bicelles in oriented solid-state NMR: altered structural information in studies of antimicrobial peptides. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 115(8), 1767-1774. https://doi.org/10.1021/jp110866g

Pedersen, J. S., Andersen, C. B. & Otzen, D. (2010). Amyloid structure--one but not the same: the many levels of fibrillar polymorphism. FEBS journal, 277(22), 4591-4601. https://doi.org/10.1111/j.1742-4658.2010.07888.x

Turkensteen, M. & Klose, A. (2012). Demand dispersion and logistics costs in one-to-many distribution systems. European Journal of Operational Research, 223(2), 499-507. https://doi.org/10.1016/j.ejor.2012.06.008

Sarup, P. M., Pedersen, S. M., Nielsen, N. C., Malmendal, A. & Loeschcke, V. (2012). The metabolic profile of long-lived Drosophila melanogaster. PLoS One, 7(10), e47461. https://doi.org/10.1371/journal.pone.0047461

Torbensen, K., Iruthayaraj, J., Ceccato, M., Kongsfelt, M. S., Breitenbach, T., Pedersen, S. U. & Daasbjerg, K. (2012). Conducting and ordered carbon films obtained by pyrolysis of covalently attached polyphenylene and polyanthracene layers on silicon substrates. Journal of Materials Chemistry, 22(35), 18172-18180. https://doi.org/10.1039/C2JM32935B

Ackerman, M., Ben-David, S., Branzei, S. & Loker, D. (2012). Weighted Clustering. In Proceedings of the Twenty-Sixth AAAI Conference on Artificial Intelligence (pp. 858-863). AAAI Press.