Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Zhou, Y., Yao, X., Zhang, Y., Zhang, Y., Shi, K., Tang, X., Qin, B., Podgorski, D. C., Brookes, J. D. & Jeppesen, E. (2018). Response of dissolved organic matter optical properties to net inflow runoff in a large fluvial plain lake and the connecting channels. Science of the Total Environment, 639 , 876–887. https://doi.org/10.1016/j.scitotenv.2018.05.180

Wang, Z., Li, Q., Xu, H., Dahl-Petersen, C., Yang, Q., Cheng, D., Cao, D., Besenbacher, F., Lauritsen, J. V., Helveg, S. & Dong, M. (2018). Controllable etching of MoS₂ basal planes for enhanced hydrogen evolution through the formation of active edge sites. Nano Energy, 49, 634-643. https://doi.org/10.1016/j.nanoen.2018.04.067

Sunden, A. E. K., Stochkel, K., Hvelplund, P., Nielsen, S. B., Dynefors, B. & Hansen, K. (2018). Stabilities of protonated water-ammonia clusters. Journal of Chemical Physics, 148(18), Article 184306. https://doi.org/10.1063/1.5023620

Møller, M. H., Glombitza, C., Lever, M. A., Deng, L., Morono, Y., Inagaki , F., Doll, M., Su, C. & Lomstein, B. A. (2018). D:L- Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months iin the Subsurface Hydrothermal Sediment of Guaymas Basin. Frontiers in Microbiology, 9(MAY), Article 967. https://doi.org/10.3389/fmicb.2018.00967

Shvetsov-Shilovski, N. I., Lein, M., Madsen, L. B., Rasanen, E., Lemell, C., Burgdoerfer, J., Arbo, D. G. & Tokesi, K. (2017). Non-perturbative semiclassical model for strong-field ionization. Journal of Physics: Conference Series, 875(3), Article 022019. https://doi.org/10.1088/1742-6596/875/3/022019

Pither, J., Pickles, B. J., Simard, S. W., Ordonez, A. & Williams, J. W. (2018). Below-ground biotic interactions moderated the postglacial range dynamics of trees. New Phytologist, 220(4), 1148-1160. https://doi.org/10.1111/nph.15203

Lucotte, E. A., Skov, L., Jensen, J. M., Coll Macià, M., Munch, K. & Schierup, M. H. (2018). Dynamic Copy Number Evolution of X- and Y-Linked Ampliconic Genes in Human Populations. Genetics, 209(3), 907-920. https://doi.org/10.1534/genetics.118.300826

Jensen, K., Harwood, S. L., Compte, M., Merino, N., Bonet, J., Álvarez-Cienfuegos, A., Mikkelsen, K., Alanes, N. N. D. P., Álvarez-Méndez, A., Sanz, L., Blanco, F. J. & Álvarez-Vallina, L. (2018). Bispecific light T-cell engagers for gene-based immunotherapy of epidermal growth factor receptor (EGFR)-positive malignancies. Cancer Immunology, Immunotherapy, 67(8), 1251-1260. https://doi.org/10.1007/s00262-018-2181-5

Djiokap, J. M. N., Meremianin, A. V., Manakov, N. L., Hu, S. X., Madsen, L. B. & Starace, A. F. (2017). Electron Matter-Wave Vortices in Double Photoionization of Helium by Attosecond Pulses. Journal of Physics: Conference Series, 875(3), Article 022014. https://doi.org/10.1088/1742-6596/875/3/022014

Klosowski, L., Piwinski, M., Wojtewicz, S., Lisak, D., Drewsen, M., Pleskacz, K. & Chwirot, S. (2017). Electron impact ionization of calcium atoms inside quadrupole trap. Journal of Physics: Conference Series, 875(6), Article 052008. https://doi.org/10.1088/1742-6596/875/6/052008

Lee, K. L., Jorgensen, N. B., Wacker, L. J., Skou, M. G., Skalmstang, K. T., Arlt, J. J. & Proukakis, N. P. (2018). Time-of-flight expansion of binary Bose-Einstein condensates at finite temperature. New Journal of Physics, 20(5), Article 053004. https://doi.org/10.1088/1367-2630/aaba39

Kofoed, R. H., Betzer, C., Lykke-Andersen, S., Molska, E. & Jensen, P. H. (2018). Investigation of RNA Synthesis Using 5-Bromouridine Labelling and Immunoprecipitation. Journal of Visualized Experiments, 2018(135), Article e57056. https://doi.org/10.3791/57056

Stephanovich, V. A., Sherman, E. Y., Zinner, N. T. & Marchukov, O. V. (2018). Energy-level repulsion by spin-orbit coupling in two-dimensional Rydberg excitons. Physical Review B, 97(20), Article 205407. https://doi.org/10.1103/PhysRevB.97.205407

Kirchhoff, S., Kessler, T., Liebermann, P. J., Assemat, E., Machnes, S., Motzoi, F. & Wilhelm, F. K. (2018). Optimized cross-resonance gate for coupled transmon systems. Physical Review A, 97(4), Article 042348. https://doi.org/10.1103/PhysRevA.97.042348

OGLE Collaboration, KMTNet Collaboration & MiNDSTEp Collaboration (2018). OGLE-2017-BLG-1434Lb: Eighth q <1 x 10(-4) Mass-Ratio Microlens Planet Confirms Turnover in Planet Mass-Ratio Function. Acta Astronomica, 68(1), 1-42.

Grombacher, D., Liu, L., Larsen, J. J. & Auken, E. (2018). Practical considerations for small receive coils in surface NMR. Journal of Applied Geophysics, 154, 81-92. https://doi.org/10.1016/j.jappgeo.2018.04.005

Rashidi, Z., Sohbati, R., Karimi, A., Farpoor, M. H., Khormali, F., Thompson, W. & Murray, A. (2019). Constraining the timing of palaeosol development in Iranian arid environments using OSL dating. Quaternary Geochronology, 49(February), 92-100. https://doi.org/10.1016/j.quageo.2018.04.006

Høiberg, H. C., Sparvath, S. M., Andersen, V. L., Kjems, J. & Andersen, E. S. (2019). An RNA origami octahedron with intrinsic siRNAs for potent gene knockdown. Biotechnology Journal, 14(1), Article 1700634. https://doi.org/10.1002/biot.201700634

Ntini, E., Louloupi, A., Liz, J., Muino, J. M., Marsico, A. & Ørom, U. A. V. (2018). Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin. Nature Communications, 9, Article 1636. https://doi.org/10.1038/s41467-018-04100-3

Rouvière, J. O., Bulfoni, M., Tuck, A., Cosson, B., Devaux, F. & Palancade, B. (2018). A SUMO-dependent feedback loop senses and controls the biogenesis of nuclear pore subunits. Nature Communications, 9, Article 1665. https://doi.org/10.1038/s41467-018-03673-3

San-Segundo, R., Blunck, H., Moreno-Pimentel, J., Stisen, A. & Gil-Martín, M. (2018). Robust Human Activity Recognition using smartwatches and smartphones. Engineering Applications of Artificial Intelligence, 72(6), 190-202. https://doi.org/10.1016/j.engappai.2018.04.002

Dowsley, R., Lacerda, F. & Nascimento, A. C. A. (2018). Commitment and Oblivious Transfer in the Bounded Storage Model with Errors. IEEE Transactions on Information Theory, 64(8), 5970-5984. https://doi.org/10.1109/TIT.2018.2796128

Son, M. T., Amer-Yahia, S., Assent, I., Birk, M., Storgaard Dieu, M., Jacobsen, J. & Kristensen, J. (2019). Scalable Interactive Dynamic Graph Clustering on Multicore CPUs. IEEE Transactions on Knowledge and Data Engineering, 31(7), 1239-1252. Article 8340880. https://doi.org/10.1109/TKDE.2018.2828086

Pincha, N., Hajam, E. Y., Badarinath, K., Batta, S. P. R., Masudi, T., Dey, R., Andreasen, P., Kawakami, T., Samuel, R., George, R., Danda, D., Jacob, P. M. & Jamora, C. (2018). PAI1 mediates fibroblast-mast cell interactions in skin fibrosis. Journal of Clinical Investigation, 128(5), 1807-1819. https://doi.org/10.1172/JCI99088

Selnihhin, D., Sparvath, S. M., Preus, S., Birkedal, V. & Andersen, E. S. (2018). Multifluorophore DNA Origami Beacon as a Biosensing Platform. ACS Nano, 12(6), 5699–5708. https://doi.org/10.1021/acsnano.8b01510

Contreras, C., Phillips, M. M., Burns, C. R., Piro, A. L., Shappee, B. J., Stritzinger, M. D., Baltay, C., Brown, P. J., Conseil, E., Klotz, A., Nugent, P. E., Turpin, D., Parker, S., Rabinowitz, D., Hsiao, E. Y., Morrell, N., Campillay, A., Castellon, S., Corco, C. ... Suntzeff, N. B. (2018). SN 2012fr: Ultraviolet, Optical, and Near-infrared Light Curves of a Type Ia Supernova Observed within a Day of Explosion. Astrophysical Journal, 859(1), Article 24. https://doi.org/10.3847/1538-4357/aabaf8

Rousselle, M., Mollion, M., Nabholz, B., Bataillon, T. & Galtier, N. (2018). Overestimation of the adaptive substitution rate in fluctuating populations. Biology Letters, 14(5), Article 20180055. https://doi.org/10.1098/rsbl.2018.0055

Ren, L., Eller, F., Lambertini, C., Guo, W.-Y., Sorrell, B. K. & Brix, H. (2018). Minimum Fe requirement and toxic tissue concentration of Fe in Phragmites australis: A tool for alleviating Fe-deficiency in constructed wetlands. Ecological Engineering, 118, 152-160. https://doi.org/10.1016/j.ecoleng.2018.05.009

Wu, N., Thodsen, H., Baattrup-Pedersen, A. & Riis, T. (2018). Flow regimes filter species traits of benthic diatom communities and modify the ecosystem function of lowland streams - a nationwide scale study. Abstract from Society for freshwater Science Annual meeting , Detroit, United States.

Testo, W., Ollgaard, B., Field, A., Almeida, T., Kessler, M. & Barrington, D. (2018). Phylogenetic systematics, morphological evolution, and natural groups in neotropical Phlegmariurus (Lycopodiaceae). Molecular Phylogenetics and Evolution, 125, 1-13. https://doi.org/10.1016/j.ympev.2018.03.016

Guo, K., Wu, N. & Riis, T. (2018). Incorporating trait and metacommunity theory into lake research under multiple stressors. Abstract from International Congress of Limnology (SIL), Nanjing, China.

Jensen, M. M., Thiel, S. K., Hoggan, E. & Bødker, S. (2018). Physical Versus Digital Sticky Notes in Collaborative Ideation. Computer Supported Cooperative Work: CSCW: An International Journal, 27(3-6), 609-645. https://doi.org/10.1007/s10606-018-9325-1, https://doi.org/10.1007/s10606-018-9325-1

Clifford, R., Grønlund, A., Larsen, K. G. & Starikovskaya, T. (2018). Upper and lower bounds for dynamic data structures on strings. In R. Niedermeier & B. Vallée (Eds.), 35th Symposium on Theoretical Aspects of Computer Science, STACS 2018 (Vol. 96, pp. 22:1-22:14). Article 22 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.STACS.2018.22

Knudsen, S., Vermeulen, J., Kosminsky, D., Walny, J., West, M., Frisson, C., Adriel Aseniero, B., MacDonald Vermeulen, L., Perin, C., Quach, L., Buk, P., Tabuli, K., Chopra, S., Willett, W. & Carpendale, S. (2018). Democratizing Open Energy Data for Public Discourse Using Visualization. In R. Mandryk & M. Hancock (Eds.), CHI 2018 - Extended Abstracts of the 2018 CHI Conference on Human Factors in Computing Systems: Engage with CHI (pp. D406:1-D406:4). Association for Computing Machinery. https://doi.org/10.1145/3170427.3186539

Ledo, D., Houben, S., Vermeulen, J., Marquardt, N., Oehlberg, L. & Greenberg, S. (2018). Evaluation Strategies for HCI Toolkit Research. In R. Mandryk & M. Hancock (Eds.), CHI 2018 - Extended Abstracts of the 2018 CHI Conference on Human Factors in Computing Systems: Engage with CHI (pp. 36:1-36:17). Association for Computing Machinery. https://doi.org/10.1145/3173574.3173610

Blascheck, T., Vermeulen, L. M., Vermeulen, J., Perin, C., Willett, W., Ertl, T. & Carpendale, S. (2019). Exploration Strategies for Discovery of Interactivity in Visualizations. IEEE Transactions on Visualization and Computer Graphics, 25(2), 1407-1420. Article 8281629. https://doi.org/10.1109/TVCG.2018.2802520

Pham, T., Vermeulen, J., Tang, A. & Vermeulen, L. M. (2018). Scale Impacts Elicited Gestures for Manipulating Holograms: Implications for AR Gesture Design. In Companion Publication of the 2019 on Designing Interactive Systems Conference 2019 Companion (2018 ed., pp. 227-240). Association for Computing Machinery. https://doi.org/10.1145/3196709.3196719

Pinder, C., Vermeulen, J. & Cowan, B. R. (2018). Subliminal Semantic Number Processing on Smartphones. In L. Bailie & N. Oliver (Eds.), MobileHCI 2018 - Beyond Mobile: The Next 20 Years - 20th International Conference on Human-Computer Interaction with Mobile Devices and Services, Conference Proceedings (pp. 24:1-24:13). Article a24 Association for Computing Machinery. https://doi.org/10.1145/3229434.3229451

Pinder, C., Vermeulen, J., Cowan, B. R. & Beale, R. (2018). Digital Behaviour Change Interventions to Break and Form Habits. ACM Transactions on Computer-Human Interaction, 25(3), 15-15:66. Article 15. https://doi.org/10.1145/3196830

Abdul, A., Vermeulen, J., Wang, D., Lim, B. Y. & Kankanhalli, M. (2018). Trends and Trajectories for Explainable, Accountable and Intelligible Systems: An HCI Research Agenda. In R. Mandryk & M. Hancock (Eds.), CHI 2018 - Extended Abstracts of the 2018 CHI Conference on Human Factors in Computing Systems: Engage with CHI (pp. 582:1-582:18). Association for Computing Machinery. https://doi.org/10.1145/3173574.3174156

Nielsen, I. G., Sommer, S. & Iversen, B. B. (2018). Pre-nucleation and formation of Group 13 metal oxides. Poster session presented at DanScatt 2018, Roskilde, Denmark.

Pramanick, A., Dmowski, W., Egami, T., Budisuharto, A. S., Weyland, F., Novak, N., Christianson, A. D., Borreguero, J. M., Abernathy, D. L. & Jørgensen, M. R. V. (2018). Stabilization of Polar Nanoregions in Pb-free Ferroelectrics. Physical Review Letters, 120(20), 207603, 1-7. Article 207603. https://doi.org/10.1103/PhysRevLett.120.207603

Gudnason, D. A., Madsen, M., Krissanaprasit, A., Gothelf, K. V. & Birkedal, V. (2018). Controlled aggregation of DNA functionalized poly(phenylene-vinylene). Chemical Communications, 54(44), 5534-5537. https://doi.org/10.1039/c8cc00943k

Knudsen, A.-K. S., Long, M., Pedersen, H. S. & Bonefeld-Jørgensen, E. C. (2018). Persistent organic pollutants and haematological markers in Greenlandic pregnant women: the ACCEPT sub-study. International Journal of Circumpolar Health, 77(1), 1456303. Article 1456303. https://doi.org/10.1080/22423982.2018.1456303

Olsen, J., Dahlström, H. S. S. & Poulsen, B. (2018). The Chronology of two medieval cemeteries in central Copenhagen: Bayesian modelling and archaeological relative age information. 162. Poster session presented at The 23rd International Radiocarbon Conference, Norway.

Van den Bossche, M., Gronbeck, H. & Hammer, B. (2018). Tight-Binding Approximation-Enhanced Global Optimization. Journal of Chemical Theory and Computation, 14(5), 2797-2807. https://doi.org/10.1021/acs.jctc.8b00039

IGISOL Collaboration (2018). Rotational excitation of the Hoyle state in ¹²C. Journal of Physics: Conference Series, 940(1), Article 012043. https://doi.org/10.1088/1742-6596/940/1/012043

Alois, S., Merrison, J., Iversen, J. J. & Sesterhenn, J. (2018). Quantifying the contact electrification of aerosolized insulating particles. Powder Technology, 332, 106-113. https://doi.org/10.1016/j.powtec.2018.03.059

Kolsbjerg, E. L., Peterson, A. A. & Hammer, B. (2018). Neural-network-enhanced evolutionary algorithm applied to supported metal nanoparticles. Physical Review B, 97(19), Article 195424. https://doi.org/10.1103/PhysRevB.97.195424