Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Pedersen, F. S. & Mikkelsen, J. G. (2021). Retroviral Replication. In Encyclopedia of Life Sciences: Virology (Vol. 2, pp. 1-12). John Wiley & Sons Ltd. https://doi.org/10.1002/9780470015902.a0029306

Ashall, C., Lu, J., Hsiao, E. Y., Hoeflich, P., Phillips, M. M., Galbany, L., Burns, C. R., Contreras, C., Krisciunas, K., Morrell, N., Stritzinger, M. D., Suntzeff, N. B., Taddia, F., Anais, J., Baron, E., Brown, P. J., Busta, L., Campillay, A., Castellón, S. ... Shappee, B. J. (2021). Carnegie Supernova Project: The First Homogeneous Sample of Super-Chandrasekhar-mass/2003fg-like Type Ia Supernovae. Astrophysical Journal, 922(2), Article 205. https://doi.org/10.3847/1538-4357/ac19ac

Madzharova, F., Bregnhøj, M., Chatterley, A. S., Løvschall, K. B., Drace, T., Andersen Dreyer, L. S., Boesen, T. & Weidner, T. (2022). Electrostatics Trigger Interfacial Self-Assembly of Bacterial Ice Nucleators. Biomacromolecules, 23(2), 505-512. https://doi.org/10.1021/acs.biomac.1c01217

Besenbacher, F. & Lauritsen, J. V. (2021). Applications of high-resolution scanning probe microscopy in hydroprocessing catalysis studies. Journal of Catalysis, 403, 4-15. https://doi.org/10.1016/j.jcat.2021.02.003

Hansen, S. T., Gomes, C., Palmieri, M., Thule, C., van de Pol, J. & Woodcock, J. (2021). Verification of Co-simulation Algorithms Subject to Algebraic Loops and Adaptive Steps. In A. L. Lafuente & A. Mavridou (Eds.), Formal Methods for Industrial Critical Systems (pp. 3-20). Springer. https://doi.org/10.1007/978-3-030-85248-1_1

Nielsen, S. B. (2021). EDITORIAL: A SPECIAL ISSUE DEDICATED TO THE PROFESSIONAL CONTRIBUTIONS OF EINAR UGGERUD. Mass Spectrometry Reviews, 40(6), 723-724. https://doi.org/10.1002/mas.21655

Salgado, F. C., Cavanagh, N., Tamburini, M., Storey, D. W., Beyer, R., Bucksbaum, P. H., Chen, Z., Di Piazza, A., Gerstmayr, E., Harsh, Isele, E., Junghans, A. R., Keitel, C. H., Kuschel, S., Nielsen, C. F., Reis, D. A., Roedel, C., Sarri, G., Seidel, A. ... Zepf, M. (2022). Single particle detection system for strong-field QED experiments. New Journal of Physics, 24(1), Article 015002. https://doi.org/10.1088/1367-2630/ac4283

Cosentino, R., Hernandez, M., Ventura, H., Campana, S., Claudi, R., Schipani, P., Aliverti, M., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., D'Alessio, F., D'Avanzo, P., Hershko, O., Kuncarayakti, H., Landoni, M., Munari, M., Pignata, G., Rubin, A. ... Hopgood, J. (2020). Development status of the UV-VIS detector system of SOXS for the ESO-NTT telescope. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114476C SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2561147

Rubin, A., Ben-Ami, S., Hershko, O., Rappaport, M., Gal-Yam, A., Bruch, R., Campana, S., Claudi, R., Schipani, P., Aliverti, M., Baruffolo, A., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Kuncarayakti, H., Landoni, M., Munari, M. ... Ventura, H. (2020). Progress on the UV-VIS arm of SOXS. In Ground-based and Airborne Instrumentation for Astronomy VIII SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2560644

Biondi, F., Santhakumari, K. K. R., Claudi, R., Aliverti, M., Marafatto, L., Greggio, D., Dima, M., Umbriaco, G., Elias-Rosa, N., Campana, S., Schipani, P., Baruffolo, A., Ben-Ami, S., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O., Kuncarayakti, H. ... Stritzinger, M. (2020). The AIV strategy of the common path of son of X-shooter. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114476P SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2561323

Claudi, R., Biondi, F., Elias-Rosa, N., Genoni, M., Munari, M., Radhakrishnan, K., Ricci, D., Zanmar Sanchez, R., Campana, S., Schipani, P., Aliverti, M., Baruffolo, A., Ben-Ami, S., Brucalassi, A., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O. ... Perez Ventura, H. (2020). Operational modes and efficiency of SOXS. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114477C SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2562321

Kuncarayakti, H., Achrén, J., Campana, S., Claudi, R., Schipani, P., Aliverti, M., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O., Landoni, M., Munari, M., Pignata, G., Rubin, A., Scuderi, S. ... Ventura, H. (2020). Design and development of the SOXS calibration unit. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 1144766 SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2560951

Schipani, P., Campana, S., Claudi, R., Aliverti, M., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O., Kuncarayakti, H., Landoni, M., Munari, M., Pignata, G., Rubin, A., Scuderi, S., Vitali, F. ... Schöller, M. (2020). Development status of the SOXS spectrograph for the ESO-NTT telescope. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 1144709 SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2560799

Sanchez, R. Z., Aliverti, M., Munari, M., Campana, S., Claudi, R., Schipani, P., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F., D'Avanzo, P., Hershko, O., Kuncarayakti, H., Landoni, M., Pignata, G., Rubin, A., Scuderi, S. ... Ventura, H. (2020). SOXS: Effects on optical performances due to gravity flexures, temperature variations, and subsystems alignment. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114475F SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2561576

Aliverti, M., Oggioni, L., Genoni, M., Pariani, G., Hershko, O., Brucalassi, A., Pignata, G., Kuncarayakti, H., Sanchez, R. Z., Munari, M., Campana, S., Schipani, P., Claudi, R., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F. ... Ventura, E. (2020). Manufacturing, integration, and mechanical verification of SOXS. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114476O SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2563883

Brucalassi, A., Pignata, G., Araiza-Duran, J. A., Campana, S., Claudi, R., Schipani, P., Aliverti, M., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Colapietro, M., Cosentino, R., D'Alessio, F., D'Avanzo, P., Genoni, M., Hershko, O., Kuncarayakti, H., Landoni, M. ... Ventura, H. (2020). Final design and development status of the acquisition and guiding system for SOXS. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114475V SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2561802

Vitali, F., Aliverti, M., Capasso, G., D'Alessio, F., Munari, M., Riva, M., Scuderi, S., Sanchez, R. Z., Campana, S., Schipani, P., Claudi, R., Baruffolo, A., Ben-Ami, S., Biondi, F., Brucalassi, A., Cosentino, R., Ricci, D., D'Avanzo, P., Kuncarayakti, H. ... Young, D. (2020). The development status of the NIR Arm of the new SoXS instrument at the ESO/NTT telescope. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114475N SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2562147

Krisciunas, K., Contreras, C., Burns, C. R., Phillips, M. M., Hamuy, M., Stritzinger, M. D., Anais, J., Boldt, L., Busta, L., Campillay, A., Castellón, S., Folatelli, G., Freedman, W. L., González, C., Hsiao, E. Y., Krzeminski, W., Morrell, N., Persson, S. E., Roth, M. ... Villanueva, S. (2020). Erratum: The Carnegie Supernova Project. I. Third Photometry Data Release of Low-redshift Type Ia Supernovae and Other White Dwarf Explosions (Astronomical Journal (2017) 154 (211) DOI: 10.3847/1538-3881/aa8df0). Astronomical Journal, 160(6), Article 289. https://doi.org/10.3847/1538-3881/abc431

Asmussen, S., Constantinescu, C. & Thøgersen, J. (2021). On the risk of credibility premium rules. Scandinavian Actuarial Journal, 2021(10), 866-889. https://doi.org/10.1080/03461238.2021.1895298

Martin, T., Pauw, PS., Karoulis, M., Mendoza, A., Günther, T., Meldgaard Madsen, L., Maurya, P. K., Doetsch, J., Rejkjär, S., Dahlin, T. & Fiandaca, G. (2021). Inversion of hydraulic conductivity from Induced Polarisation, Part B: field examples from five countries. Abstract from EAGE Near Surface Geoscience 2021, Bordeaux, France. https://doi.org/10.3997/2214-4609.202120093

Heidari, A., Hansen, T. M., Amini, H., Niri, M. E., Madsen, R. B. & Amini, N. (2022). Single-step probabilistic inversion of 3D seismic data of a carbonate reservoir in Southwest Iran. Geophysics, 87(2). https://doi.org/10.1190/geo2021-0303.1

Fiandaca, G., Meldgaard Madsen, L., Olmo, M., Römhild, L. & Maurya, P. K. (2021). Inversion of hydraulic conductivity from Induced Polarisation, Part A: methodology and verification. Abstract from EAGE Near Surface Geoscience 2021, Bordeaux, France. https://doi.org/10.3997/2214-4609.202120192

Yunev, O. A., Carstensen, J., Stelmakh, L. V., Belokopytov, V. N. & Suslin, V. V. (2021). Reconsideration of the phytoplankton seasonality in the open Black Sea. Limnology and Oceanography Letters, 6(1), 51-59. https://doi.org/10.1002/lol2.10178

Braun, L., Cammarota, R. & Schneider, T. (2021). A Generic Hybrid 2PC Framework with Application to Private Inference of Unmodified Neural Networks: Extended Abstract. Poster session presented at Privacy in Machine Learning.

Iparraguirre, L., Alberro, A., Hansen, T. B., Castillo-Triviño, T., Muñoz-Culla, M. & Otaegui, D. (2021). Profiling of plasma extracellular vesicle transcriptome reveals that circrnas are prevalent and differ between multiple sclerosis patients and healthy controls. Biomedicines, 9(12), Article 1850. https://doi.org/10.3390/biomedicines9121850

Krishnan, S. & Mudrich, M. (2022). Intense laser matter interaction in atoms, finite systems and condensed media: recent experiments and theoretical advances. European Physical Journal. Special Topics, 230(23), 3981-3988. https://doi.org/10.1140/epjs/s11734-021-00364-x

Schluttenhofer, S. & Johannes, J. (2020). Adaptive Minimax Testing for Circular Convolution. Mathematical Methods of Statistics, 29(2), 106-133. https://doi.org/10.3103/S1066530720020039

Chacón-Parra, A., Lewis, D., Glasius, M. & van Eyk, P. (2022). A multi-component reaction kinetics model for the hydrothermal liquefaction of carbohydrates and co-liquefaction to produce 5-ethoxymethyl furfural. Fuel, 311, Article 122499. https://doi.org/10.1016/j.fuel.2021.122499

Glasius, M., Thomsen, D., Wang, K., Iversen, L. S., Duan, J. & Huang, R. J. (2022). Chemical characteristics and sources of organosulfates, organosulfonates, and carboxylic acids in aerosols in urban Xi'an, Northwest China. Science of the Total Environment, 810, Article 151187. https://doi.org/10.1016/j.scitotenv.2021.151187

Simonsen, F. D. S., Kyrkjebø, S., Balog, R., Hornekær, L., Srivastava, P. & Morgenstern, K. (2021). Formation of water ice clusters on graphite.

Simonsen, F. D. S. (2021). Formation of water ice clusters on clean and functionalised graphite.

Jacobsen, B. H. (2021). At bevogte en CO₂-pøl: CO₂-lagring i undergrunden kan hjælpe klimaet. Men hvordan ved man, at det bliver dernede? Weekendavisen, 272(45).

Ernstsen, C. V., Login, F. H., Schelde, A.-S. B., Therkildsen, J. R., Møller-Jensen, J., Nørregaard, R., Prætorius Øhrwald, H. & Nejsum, L. N. (2022). Acute pyelonephritis: increased plasma membrane targeting of renal aquaporin-2. Acta Physiologica, 234(2), Article e13760. https://doi.org/10.1111/apha.13760

Lanata, N. (2022). Operatorial formulation of the ghost rotationally invariant slave-boson theory. Physical Review B - Condensed Matter and Materials Physics, 105(4), Article 045111. https://doi.org/10.1103/PhysRevB.105.045111

Lu, H. P., Karoff, C. & Zhang, L. Y. (2021). Magnetic activity and age estimation of red giants using neural networks. Monthly Notices of the Royal Astronomical Society, 505(2), 2124-2135. https://doi.org/10.1093/mnras/stab1395

Mohammad-Beigi, H., Zanganeh, M., Scavenius, C., Eskandari, H., Farzadfard, A., Shojaosadati, S. A., Enghild, J. J., Otzen, D. E., Buell, A. K. & Sutherland, D. S. (2022). A Protein Corona Modulates Interactions of α-Synuclein with Nanoparticles and Alters the Rates of the Microscopic Steps of Amyloid Formation. ACS Nano, 16(1), 1102-1118. https://doi.org/10.1021/acsnano.1c08825

Bertuzzi, G., Corti, V., Izzo, J. A., Ricko, S., Jessen, N. & Jørgensen, K. A. (2022). Organocatalytic Enantioselective Construction of Conformationally Stable C(sp² )−C(sp³ ) Atropisomers. Journal of the American Chemical Society, 144(2), 1056-1065. https://doi.org/10.1021/jacs.1c12619

Gleirscher, M., Pol, J. V. D. & Woodcock, J. (2021). A Manifesto for Applicable Formal Methods. (pp. 1-17). CoRR https://arxiv.org/abs/2112.12758

Shaik, I. & Pol, J. V. D. (2021). Classical Planning as QBF without Grounding (extended version). (pp. 1-17). CoRR https://arxiv.org/abs/2106.10138

Gleirscher, M., Pol, J. V. D. & Woodcock, J. (Eds.) (2021). Proceedings First Workshop on Applicable Formal Methods. Electronic Proceedings in Theoretical Computer Science https://doi.org/10.4204/EPTCS.349

Calabrese, V., Trovato, A., Scuto, M., Ontario, M. L., Rampulla, F., Zimbone, V., La Mantia, I., Greco, V., Sciuto, S., Crea, R., Calabrese, E. J. & Dionisio, G. (2021). Food for Brain Health. In S. I. S. Rattan & G. Kaur (Eds.), Nutrition, Food and Diet in Ageing and Longevity (pp. 239-274). Springer. https://doi.org/10.1007/978-3-030-83017-5_13

André, É., Marinho, D. & Pol, J. V. D. (2021). A Benchmarks Library for Extended Parametric Timed Automata. In F. Loulergue & F. Wotawa (Eds.), Tests and Proofs - 15th International Conference, TAP 2021, Held as Part of STAF 2021, Proceedings: 15th International Conference, TAP 2021, Held as Part of STAF 2021, Virtual Event, June 21–22, 2021, Proceedings (pp. 39-50). Springer. https://doi.org/10.1007/978-3-030-79379-1_3

André, É., Arias, J., Petrucci, L. & Pol, J. V. D. (2021). Iterative Bounded Synthesis for Efficient Cycle Detection in Parametric Timed Automata. In J. F. Groote & K. G. Larsen (Eds.), Tools and Algorithms for the Construction and Analysis of Systems - 27th International Conference, TACAS 2021 Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2021: 27th International Conference, TACAS 2021, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2021, Luxembourg City, Luxembourg, March 27 – April 1, 2021, Proceedings, Part I (pp. 311-329). Springer. https://doi.org/10.1007/978-3-030-72016-2_17

Amorim Franchi, G., Jensen, M. B., Foldager, L., Larsen, M. & Herskin, M. S. (2022). Effects of dietary and milking frequency changes and administration of cabergoline on clinical udder characteristics in dairy cows during dry-off. Research in Veterinary Science, 143, 88-98. https://doi.org/10.1016/j.rvsc.2021.12.019

Green, K., Wittenborn, T. R., Fahlquist-Hagert, C., Terczynska-Dyla, E., van Campen, N., Jensen, L., Reinert, L., Hartmann, R., Paludan, S. R. & Degn, S. E. (2021). B Cell Intrinsic STING Signaling Is Not Required for Autoreactive Germinal Center Participation. Frontiers in Immunology, 12, Article 782558. https://doi.org/10.3389/fimmu.2021.782558

Khalafinejad, S., Molaverdikhani, K., Blecic, J., Mallonn, M., Nortmann, L., Caballero, J. A., Rahmati, H., Kaminski, A., Sadegi, S., Nagel, E., Carone, L., Amado, P. J., Azzaro, M., Bauer, F. F., Casasayas-Barris, N., Czesla, S., Von Essen, C., Fossati, L., Güdel, M. ... Zechmeister, M. (2021). Probing the atmosphere of WASP-69 b with low-and high-resolution transmission spectroscopy. Astronomy and Astrophysics, 656, Article A142. https://doi.org/10.1051/0004-6361/202141191

Cao, K., Svenning, J.-C., Yan, C., Zhang, J., Mi, X. & Ma, K. (2021). Undersampling Correction Methods to Control γ-Dependence for Comparing β-Diversity Between Regions: Photo Gallery. Ecological Society of America. Bulletin, 102(4), Article e01922. https://doi.org/10.1002/bes2.1922

Jafargholi, Z., Larsen, K. G. & Simkin, M. (2021). Optimal oblivious priority queues. In D. Marx (Ed.), ACM-SIAM Symposium on Discrete Algorithms, SODA 2021 (pp. 2366-2383). Association for Computing Machinery.

Ma, R., Sutherland, D. S. & Shi, Y. (2021). Harmonic generation in transition metal dichalcogenides and their heterostructures. Materials Today, 50, 570-586. https://doi.org/10.1016/j.mattod.2021.07.023

Larsen, K. G., Pagh, R. & Tetek, J. (2021). CountSketches, Feature Hashing and the Median of Three. In M. Meila & T. Zhang (Eds.), Proceedings of the 38th International Conference on Machine Learning, ICML 2021 (pp. 6011-6020) http://proceedings.mlr.press/v139/larsen21a.html

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