Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Taiz, L., Møller, I. M., Murphy, A. & Peer, W. A. (2024). Fundamentals of Plant Physiology. (2. ed.) Oxford University Press.

Bruhn, D., Griffin, K. L. & Møller, I. M. (2025). Importance of Timing of Dark Acclimation for Estimating Light Inhibition of Leaf Respiratory CO₂ Efflux. Plant, Cell & Environment, 48(5), 3151-3158. https://doi.org/10.1111/pce.15335

Afrough, A., Weihrauch, T. N. A., Juhl, D. W., Bakalis, S., Malmos, K. G. & Vosegaard, T. (2024). Water in Fat-Filled Milk Powder: New Insights by Magnetic Resonance Spectroscopy. Poster session presented at 19th Food Colloids Conference, Thessaloniki, Greece.

Afrough, A. (2024). Analogy Between Magnetic Resonance Relaxation and First-Order Chemical Reaction in Porous Media. 225. Abstract from 16th International Conference of Magnetic Resonance in Porous Media, Tromsø, Norway.

Mokhtari, R., Afrough, A., Talaei, A. & Feilberg, K. L. (2024). Investigating Rock Material Impact on Low Salinity Water Flooding: Experimental Study with Chalk Samples of a Danish North Sea Oil Reservoir. In Society of Petroleum Engineers - SPE Europe Energy Conference and Exhibition, EURO 2024 (pp. SPE-220089-MS) https://doi.org/10.2118/220089-MS

Bakalis, S., Vosegaard, T., Afrough, A. & Malmos, K. G. (2024). Designing Powder Products: A New Take on an Old Problem. Abstract from Food Physics 2024, London, United Kingdom.

Zamiri, M. S., Afrough, A., Marica, F., Romero-Zerón, L., Nicot, B. & Balcom, B. J. (2024). Unsteady-State Relative Permeability Curves Derived From Saturation Data and Partial Derivatives Using Magnetic Resonance Imaging. Petrophysics, 65(05), 699-710. Article SPWLA-2024-v65n5a3 . https://doi.org/10.30632/PJV65N5-2024a3

Afrough, A. (2025). Derivation of Multi-Exponential Magnetic Resonance Relaxation Equations in Simple Pore Geometries. Applied Magnetic Resonance, 56(3), 313-358. Article 014009. https://doi.org/10.1007/s00723-024-01729-w

Okholm, K. R., Nooteboom, S. W., Vinther, J. N., Lamberti, V., Dey, S., Andersen, E. S., Zijlstra, P. & Sutherland, D. S. (2024). Single-Molecule Multivalent Interactions Revealed by Plasmon-Enhanced Fluorescence. ACS Nano, 18(52), 35429-35442. https://doi.org/10.1021/acsnano.4c12600

Marvian, A. T., Strauss, T., Tang, Q., Tuck, B. J., Keeling, S., Rüdiger, D., Mirzazadeh Dizaji, N., Mohammad-Beigi, H., Nuscher, B., Chakraborty, P., Sutherland, D. S., McEwan, W. A., Köglsperger, T., Zahler, S., Zweckstetter, M., Lichtenthaler, S. F., Wurst, W., Schwarz, S. & Höglinger, G. (2024). Distinct regulation of Tau Monomer and aggregate uptake and intracellular accumulation in human neurons. Molecular Neurodegeneration, 19(1), Article 100. https://doi.org/10.1186/s13024-024-00786-w

Olsen, K., Sunde, P., Vedel-Smith, C., Hansen, M. M. & Thomsen, P. F., (2023). Statusrapport fra den nationale overvågning af ulv (Canis lupus) i Danmark – 1. kvartal 2023, 26 p., Fagligt notat fra DCE – Nationalt Center for Miljø og Energi Vol. 2023 No. 72 https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Notater_2023/N2023_72.pdf

S. Tellez, E., Aumüller, M. & Mic, V. (2025). Overview of the SISAP 2024 Indexing Challenge. In E. Chávez, B. Kimia, J. Lokoč, M. Patella & J. Sedmidubsky (Eds.), Similarity Search and Applications - 17th International Conference, SISAP 2024, Proceedings (pp. 255–265). Springer. https://doi.org/10.1007/978-3-031-75823-2_21

Thy, P., Tegner, C. & Lesher, C. E. (2023). Petrology of the Skaergaard Layered Series. Geological Survey of Denmark and Greenland (GEUS). GEUS Bulletin Vol. 56 https://doi.org/10.34194/geusb.v56.8327

Tegner, C., Salmonsen, L. P., Holness, M. B., Lesher, C. E., Humphreys, M. C. S., Thy, P. & Nielsen, T. F. D. (2023). A whole-rock data set for the Skaergaard intrusion, East Greenland. GEUS Bulletin, 53, Article 8316. https://doi.org/10.34194/geusb.v53.8316

Madsen, O. L. & Møller-Pedersen, B. (2024). An introduction to object-oriented programming as modeling. https://oopm.org

Nielsen, S. B., Lyhne, N. M., Andersen, M., Plaschke, C. C., Gothelf, A. B., Johansen, J., Maare, C., Farhadi, M., Godballe, C., Primdahl, H., Holm, A. I. S., Alsner, J., Kjærgaard, T. & Overgaard, J. (2025). Management of head and neck cancer of unknown primary: A phase IV study by DAHANCA. European Journal of Cancer, 216, Article 115211. https://doi.org/10.1016/j.ejca.2024.115211

Nielsen, S. B., Larsen, M. H. H., Channir, H. I., Kiss, K., Ulhøi, B. P., Godballe, C., Eriksen, J. G., Rubek, N., Kjaergaard, T. & von Buchwald, C. (2025). Tongue base mucosectomy: A case for precision. Oral Oncology, 161, 107166. Article 107166. https://doi.org/10.1016/j.oraloncology.2024.107166

Bang Jensen, B., Thorup, V. M., Foldager, L., Nielsen, K. V., Frandsen, M., Pastell, M. & Krogh, M. A. (2024). Precision fish farming in recirculated aquaculture systems - from theory to implementation. Poster session presented at 17th International Symposium on Veterinary Epidemiology and Economics, Sydney, New South Wales, Australia. https://isvee2024-c10000.eorganiser.com.au/data/clients/1/791/submissions/177854/abstract.pdf

Otzen, D. E. (2024). Editorial: Research methods in biochemistry and biophysics. BBA advances, 6, Article 100121. https://doi.org/10.1016/j.bbadva.2024.100121

Paiva, P., Teixeira, L. M. C., Wei, R., Liu, W., Weber, G., Morth, J. P., Westh, P., Petersen, A. R., Johansen, M. B., Sommerfeldt, A., Sandahl, A., Otzen, D. E., Fernandes, P. A. & Ramos, M. J. (2025). Unveiling the enzymatic pathway of UMG-SP2 urethanase: insights into polyurethane degradation at the atomic level. Chemical Science, 16(5), 2437-2452. https://doi.org/10.1039/d4sc06688j

Dansirima, P., Grinderslev, J. B., Kristensen, L. G., Utke, R. & Jensen, T. R. (2025). Tailoring dehydrogenation in lithium borohydride – magnesium nickel hydride hydrogen storage systems with metal halide additives. International Journal of Hydrogen Energy, 98, 908-914. https://doi.org/10.1016/j.ijhydene.2024.12.124

Tønnesen, P. T. & Gero, S. (2024). Studying the effect of camera tag associated white light on the diving and foraging behavior of Eastern Caribbean sperm whales. Deep-Sea Research Part I: Oceanographic Research Papers, 203, Article 104200. https://doi.org/10.1016/j.dsr.2023.104200

Tamburini, P., Pedersen, D. V., Devore, D., Cone, J., Patel, R., Hunter, T., Sun, F., Andersen, G. R. & Hunter, J. (2024). Characterization of the bispecific VHH antibody tarperprumig (ALXN1820) specific for properdin and designed for low-volume administration. mAbs, 16(1), Article 2415060. https://doi.org/10.1080/19420862.2024.2415060

Andersen, G. R. & Emsley, J. (2023). Structure and Function of the Leukocyte Integrin αMβ2. In D. Gullberg & J. A. Eble (Eds.), Integrins in Health and Disease: Key Effectors of Cell-Matrix and Cell-Cell Interactions (Vol. 13, pp. 357-377). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-23781-2_11

Hillers-Bendtsen, A. E., Johansen, M. B., Juncker von Buchwald, T., Mikkelsen, K. V., Olsen, J., Jørgensen, P. & Helgaker, T. (2025). Cluster perturbation theory: XI. Excitation-energy series using a variational excitation-energy function. The Journal of Chemical Physics, 162(2), Article 024114. https://doi.org/10.1063/5.0236908

Dare, E. & Kiderlen, M. (2024). Rotational Crofton formulae with a fixed subspace. Advances in Applied Mathematics, 153, Article 102611. https://doi.org/10.1016/j.aam.2023.102611

Dare, E. (2024). Stereologically adapted Crofton formulae for tensor valuations. Advances in Applied Mathematics, 160, Article 102754. https://doi.org/10.1016/j.aam.2024.102754

Laursen, K. R., Rasmussen, B. B., Rosati, B., Gutzke, V. H., Østergaard, K., Ravn, P., Kjærgaard, S., Glasius, M. & Sigsgaard, T. (2022). A randomized controlled trial of acute health effects from exposure to indoor ultrafine particles. Paper presented at 17th International Conference on Indoor Air Quality and Climate, INDOOR AIR 2022, Kuopio, Finland.

Pandit, S., Jacquemin, L., Zhang, J., Gao, Z., Nishina, Y., Meyer, R. L., Mijakovic, I., Bianco, A. & Pang, C. (2023). Polymyxin B complexation enhances the antimicrobial potential of graphene oxide. Frontiers in cellular and infection microbiology, 13, Article 1209563. https://doi.org/10.3389/fcimb.2023.1209563

Sahariah, P., Papi, F., Merz, K. L., Sigurjonsson, O. E., Meyer, R. L. & Nativi, C. (2024). Chitosan–saccharide conjugates for eradication of Pseudomonas aeruginosa biofilms. RSC Applied Polymers, 2(3), 461-472. https://doi.org/10.1039/D3LP00263B

Baudoin, F., Chen, L., Huang, C.-H., Ouyang, C., Tindel, S. & Wang, J. (2025). Weighted Besov spaces on Heisenberg groups and applications to the Parabolic Anderson model. ArXiv. https://doi.org/10.48550/arXiv.2501.04593

Zhang, H. R., Yang, Q., Wei, S., Yue, Y. & Yu, H. B. (2024). Impact of shadow glass transition on crystallization in metallic glass. National Science Open, 3(5), Article 20230064. https://doi.org/10.1360/nso/20230064

Pires, F., Tzeli, D., Jones, N. C., Hoffmann, S. V. & Raposo, M. (2025). Electronic States of Epigallocatechin-3-Gallate in Water and in 1,2-dipalmitoyl-sn-glycero-3-phospho-(1′-rac-glycerol) (Sodium Salt) Liposomes. International Journal of Molecular Sciences , 26(3), Article 1084. https://doi.org/10.3390/ijms26031084

Caragiannis, I. & Homrighausen, S. (2024). Estimating the Expected Social Welfare and Cost of Random Serial Dictatorship. In G. Schäfer & C. Ventre (Eds.), Algorithmic Game Theory - 17th International Symposium, SAGT 2024, Proceedings (pp. 184–201). Springer. https://doi.org/10.1007/978-3-031-71033-9_11

Mifsud, D. V., Góbi, S., Herczku, P., Sulik, B., Juhász, Z., Ioppolo, S., Mason, N. J. & Tarczay, G. (2024). Electron Irradiation of Crystalline Nitrous Oxide Ice at Low Temperatures: Applications to Outer Solar System Planetary Science.

Rocha, W. R. M., McClure, M. K., Sturm, J. A., Beck, T. L., Smith, Z. L., Dickinson, H., Sun, F., Egami, E., Boogert, A. C. A., Fraser, H. J., Dartois, E., Jimenez-Serra, I., Noble, J. A., Bergner, J., Caselli, P., Charnley, S. B., Chiar, J., Chu, L., Cooke, I. ... Linnartz, H. (2024). Ice inventory towards the protostar Ced 110 IRS4 observed with the James Webb Space Telescope. Results from the ERS Ice Age program.

Baattrup-Pedersen, A., Friis, K. B., Friberg, N. & Riis, T. (2025). Inter-linkages between in-stream plant diversity and macroinvertebrate communities. Hydrobiologia, 852(1), 235-247. https://doi.org/10.1007/s10750-024-05700-5

Andersen, D. K., Ejrnæs, R., Minter, M., Riis, T., Vinther, E. & Bruun, H. H. K. (2025). Environmental drivers of the decline of the fen orchid Liparis loeselii. Nordic Journal of Botany, 2025(1), Article e04419. https://doi.org/10.1111/njb.04419

Bringmann, K., Grønlund, A., Künnemann, M. & Larsen, K. G. (2024). The NFA Acceptance Hypothesis: Non-Combinatorial and Dynamic Lower Bounds. In V. Guruswami (Ed.), 15th Innovations in Theoretical Computer Science Conference (ITCS 2024) (pp. 22:1-22:25). Article 22 Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ITCS.2024.22

Larsen, K. G. (2024). Bagging is an Optimal PAC Learner (Extended Abstract). In K. Larson (Ed.), Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence (IJCAI-24) (pp. 8411-8415). IJCAI Organization. https://doi.org/10.24963/ijcai.2024/932

Kalavasis, A., Karbasi, A., Larsen, K. G., Velegkas, G. & Zhou, F. (2024). Replicable Learning of Large-Margin Halfspaces. In Proceedings of the 41 st International Conference on Machine Learning MLResearch Press.

Hanneke, S., Larsen, K. G. & Zhivotovskiy, N. (2024). Revisiting Agnostic PAC Learning. In Proceedings - 2024 IEEE 65th Annual Symposium on Foundations of Computer Science, FOCS 2024 (pp. 1968-1982). IEEE. https://doi.org/10.1109/FOCS61266.2024.00118

Alon, N., Bousquet, O., Larsen, K. G., Moran, S. & Moran, S. (2024). Diagonalization Games. The American Mathematical Monthly, 131(10), 866-879. https://doi.org/10.1080/00029890.2024.2393992

Afshani, P., Killmann, R. & Larsen, K. G. (2024). Hierarchical categories in colored searching. Computational Geometry, 121, Article 102090. https://doi.org/10.1016/j.comgeo.2024.102090

da Cunha, A., Høgsgaard, M. M. & Larsen, K. G. (2024). Optimal Parallelization of Boosting. Abstract from NeurIPS'24: 38th Conference on Neural Information Processing Systems, Vancouver, Canada.

Zhivotovskiy, N., Larsen, K. G. & Montasser, O. (2024). Derandomizing Multi-Distribution Learning. Abstract from NeurIPS'24: 38th Conference on Neural Information Processing Systems, Vancouver, Canada.

Shah, A., Zhang, X., Snee, M., Lockhart-Cairns, M. P., Levy, C. W., Jowitt, T. A., Birchenough, H. L., Dean, L., Collins, R., Dodd, R. J., Roberts, A. R. E., Enghild, J. J., Mantovani, A., Fontana, J., Baldock, C., Inforzato, A., Richter, R. P. & Day, A. J. (2025). The structural organisation of pentraxin-3 and its interactions with heavy chains of inter-α-inhibitor regulate crosslinking of the hyaluronan matrix. Matrix biology : journal of the International Society for Matrix Biology, 136, 52-68. https://doi.org/10.1016/j.matbio.2025.01.002

Chorro, T. H. D., Kaussler, C., Kolodiazhnaia, J. V., Jensen, F., Skrydstrup, T. & Correia, C. R. D. (2025). Tandem synthesis of enantioenriched spirolactones via one-pot Heck-Matsuda reactions directly from nitroarenes. Organic Chemistry Frontiers , 12(4), 1257-1265. https://doi.org/10.1039/d4qo01979b

Yuan, H., Mitchell, C. W., Ferenbach, A. T., Bonati, M. T., Feresin, A., Benke, P. J., Tan, Q. K. G. & van Aalten, D. M. F. (2025). Exploiting O-GlcNAc dyshomeostasis to screen O-GlcNAc transferase intellectual disability variants. Stem Cell Reports, 20(1), 102380. Article 102380. https://doi.org/10.1016/j.stemcr.2024.11.010

Nan Cheng, Gupta, N., Mitrokotsa, A. & Tozawa, K. (2024). Constant-Round Private Decision Tree Evaluation for Secret Shared Data. Proceedings on Privacy Enhancing Technologies, 2024(1), 397-412. https://doi.org/10.56553/popets-2024-0023

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