Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Anderson, J. W., Novák, A., Sükösd, Z., Golden, M., Arunapuram, P., Edvardsson, I. & Hein, J. (2013). Quantifying variances in comparative RNA secondary structure prediction. BMC Bioinformatics, 14, Article 149. https://doi.org/10.1186/1471-2105-14-149

Schou, U. K., Peters, C. D., Wan Kim, S., Frøkiær, J. & Nielsen, S. (2007). Characterization of a rat model of right-sided heart failure induced by pulmonary trunk banding. Journal of Experimental Animal Science, 43(4), 237-254. https://doi.org/10.1016/j.jeas.2006.10.004

Damsgaard, C., Fago, A., Hagner-Holler, S., Malte, H., Burmester, T. & Weber, R. E. (2013). Molecular and Functional Characterisation of Hemocyanin of the Giant African Millipede Archispirostreptus gigas. Journal of Experimental Biology, 216, 1616-1623. https://doi.org/10.1242/jeb.080861

Leite, C. A. C., Taylor , E. W., Wang, T., Abe, A. S. & de Andrade, D. O. V. (2013). Ablation of the Ability to Control the right-to-left cardiac Shunt does not Affect Oxygen Uptake Specific Dynamic Action or Growth in the Rattlesnake Crotalus durissus. Journal of Experimental Biology, 216, 1881-1889. https://doi.org/10.1242/jeb.083840

Oliveira, C., Wahlberg, M., Johnson, M., J. O. Miller, P. & Madsen, P. P. T. (2013). The function of male sperm whale slow clicks in a high latitude habitat: Communication, echolocation, or prey debriliation? Acoustical Society of America. Journal, 135(5), 3135-3144. https://doi.org/10.1121/1.4795798

Andersen, C. K. & Mølmer, K. (2013). Effective description of tunneling in a time-dependent potential with applications to voltage switching in Josephson junctions. Physical Review A, 87(5), 052119. https://doi.org/10.1103/PhysRevA.87.052119

Song, J., Zhang, Z., Zhang, S., Liu, L., Li, Q., Xie, E., Gothelf, K. V., Besenbacher, F. & Dong, M. (2013). Isothermal Hybridization Kinetics of DNA Assembly of Two-Dimensional DNA Origami. Small, 9(17). https://doi.org/10.1002/smll.201202861

Zhang, Y., Wang, W., Chen, J., Zhang, K., Gao, F., Gao, B., Zhang, S., Dong, M., Besenbacher, F., Gong, W., Zhang, M., Sun, F. & Feng, W. (2013). Structural Insights into the Intrinsic Self-Assembly of Par-3 N-Terminal Domain. Structure, 21(6), 997-1006. https://doi.org/10.1016/j.str.2013.04.004

Ciliberto, S., Imparato, A., Naert, A. & Tanase, M. (2013). Heat Flux and Entropy Produced by Thermal Fluctuations. Physical Review Letters, 110(18), 180601. https://doi.org/10.1103/PhysRevLett.110.180601

Chernyy, S., Jensen, B. E. B., Shimizu, K., Ceccato, M., Pedersen, S. U., Zelikin, A. N., Daasbjerg, K. & Iruthayaraj, J. (2013). Surface Grafted Glycopolymer Brushes to Enhance Selective Adhesion of HepG2 Cells. Journal of Colloid and Interface Science, 404, 207–214. https://doi.org/10.1016/j.jcis.2013.04.025

Jensen, B., Wang, T., Christoffels, V. M. & Moorman, A. F. M. (2013). Evolution and Development of the building plan of the vertebrate heart. Biochimica et Biophysica Acta. Molecular Cell Research, 1833(4), 783-794. https://doi.org/10.1016/j.bbamcr.2012.10.004

Lloyd, K., Schreiber, L., Petersen, D. G., Kjeldsen, K. U., Lever, M. A., Steen, A. D., Stepanauskas, R., Richter, M., Kleindienst, S., Lenk, S., Schramm, A. & Jorgensen, B. B. (2013). Predominant archaea in marine sediments degrade detrital proteins. Nature, 496(7444), 215-218. https://doi.org/10.1038/nature12033

Gammelmark, S. (2013). Efficient Bayesian Parameter Estimation from Continuously Monitered Quantum Systems.

Wædegaard, K. J., Frislev, M. T. & Balling, P. (2013). Femtosecond laser excitation of dielectric materials: experiments and modeling of optical properties and ablation depths. Applied Physics A: Materials Science & Processing, 110(3), 601-605. https://doi.org/10.1007/s00339-012-7136-7

Wædegaard, K. J., Hansen, H. D. & Balling, P. (2013). Optimizing the efficiency of femtosecond-laser-written holograms. Applied Physics B, 113(3), 345-349. https://doi.org/10.1007/s00340-013-5496-0

Kragh, H. (2013). Ørsted, naturvidenskaben og den danske guldalder. In K. Lykke Grand (Ed.), Guld: Skatte fra den Danske Guldalder (pp. 150-165). Systime Academic.

Grönvall, E. & Verdezoto, N. (2013). Understanding Challenges and Opportunities of Preventive Blood Pressure Self-Monitoring at Home. In P. Palanque , F. Détienne & A. Tricot (Eds.), Proceedings of the 31st European Conference on Cognitive Ergonomics (ACM ECCE 2013) Association for Computing Machinery. https://doi.org/10.1145/2501907.2501962

Rasmussen, C. (2013). Ny scanner afslører undergrundens hemmeligheder. Laboranten, 57(6), 12-13. http://www.e-pages.dk/hk/1257/2

Kaul, M., Yang, B. & Jensen, C. S. (2013). Building Accurate 3D Spatial Networks to Enable Next Generation Intelligent Transportation Systems. In IEEE 14th International Conference on Mobile Data Management (MDM), 2013 (Volume:1 ) (pp. 137 - 146 ). IEEE. https://doi.org/10.1109/MDM.2013.24

Andersen, O., Jensen, C. S., Torp, K. & Yang, B. (2013). EcoTour: Reducing the Environmental Footprint of Vehicles Using Eco-Routes. In IEEE 14th International Conference on Mobile Data Management (MDM), 2013 (Volume:1) (pp. 338 - 340 ). IEEE. https://doi.org/10.1109/MDM.2013.50

Balakrishnan, V. S., Vad, B. S. & Otzen, D. (2013). Novicidin's membrane permeabilizing activity is driven by membrane partitioning but not by helicity: A biophysical study of the impact of lipid charge and cholesterol. BBA General Subjects, 1834(6), 996-1002. https://doi.org/10.1016/j.bbapap.2013.03.025

Pigolotti, S., Lizana, L., Otzen, D. & Sneppen, K. (2013). Quality control system response to stochastic growth of amyloid fibrils. FEBS Letters, 587(9), 1405-1410. https://doi.org/10.1016/j.febslet.2013.03.018

Dueholm, M. S., Søndergaard, M., Nilsson, M., Christiansen, G., Stensballe, A., Overgaard, M. T., Givskov, M. C., Tolker-Nielsen, T., Otzen, D. & Nielsen, P. H. (2013). Expression of Fap amyloids in Pseudomonas aeruginosa, P. fluorescens, and P. putida results in aggregation and increased biofilm formation. MicrobiologyOpen, 2(3), 365-382. https://doi.org/10.1002/mbo3.81

Arndt, S., Jørgensen, B. B., LaRowe, D. E., Middelburg, J. J., Pancost, R. D. & Regnier, P. (2013). Quantifying the degradation of organic matter in marine sediments: A review and synthesis. Earth-Science Reviews, 123, 53-86. https://doi.org/10.1016/j.earscirev.2013.02.008

Søndergaard, M., Bøjesen, E. D., Borup, K. A., Christensen, S., Christensen, M. & Iversen, B. B. (2013). Sintering and annealing effects on ZnO microstructure and thermoelectric properties. Acta Materialia, 61(9), 3314-3323. https://doi.org/10.1016/j.actamat.2013.02.021

Gorczyca, I., Suski, T., Staszczak, G., Christensen, N. E., Svane, A., Wang, X., Dimakis, E. & Moustakas, T. (2013). InN/GaN Superlattices: Band Structures and Their Pressure Dependence. Japanese Journal of Applied Physics, 52(8), 08JL06. https://doi.org/10.7567/JJAP.52.08JL06

Hayashi, Y., Miclaus, T., Scavenius, C., Engelmann, P., Autrup, H., Enghild, J. J., Sutherland, D. S. & Scott-Fordsmand, J. J. (2013). Nanoparticle-protein corona in invertebrate in vitro testing.

Lenoir, J., Graae, B. J., Aarrestad, P. A., Alsos, I. G., Armbruster, W. S., Austrheim, G., Bergendorff, C., Birks, H. J. B., Bråthen, K. A., Brunet, J., Bruun, H. H., Dahlberg, C. J., Decocq, G., Diekmann, M., Dynesius, M., Ejrnaes, R., Grytnes, J.-A., Hylander, K., Klanderud, K. ... Svenning, J.-C. (2013). Local temperatures inferred from plant communities suggest strong spatial buffering of climate warming across Northern Europe. Global Change Biology, 19(5), 1470-1481. https://doi.org/10.1111/gcb.12129

Malmendal, A., Sørensen, J. G., Overgaard, J., Holmstrup, M., Nielsen, N. C. & Loeschcke, V. (2013). Metabolomic analysis of the selection response of Drosophila melanogaster to environmental stress: are there links to gene expression and phenotypic traits? Naturwissenschaften, 100, 417–427.

Waagner, D., Holmstrup, M., Bayley, M. & Sørensen, J. G. (2013). Induced cold-tolerance mechanisms depend on duration of acclimation in the chillsensitive Folsomia candida (Collembola). Journal of Experimental Biology, 216, 1991-2000.

Kahveci, D., Guo, Z., Cheong, L.-Z., Falkeborg, M., Panpipat, W. & Xu, X. (2013). Oxidative stability of enzymatically processed oils and fats. In A. Logan, U. Nienaber & X. Pan (Eds.), Lipid oxidation: Challenges in food systems (pp. 211-242). AOCS press, Urbana IL. http://www.aocs.org/Store/ProductDetail.cfm?ItemNumber=18702

Zhai, X., Piwpuan, N., Arias, C. A., Headley, T. & Brix, H. (2013). Can root exudates from emergent wetland plants fuel denitrification in subsurface flow constructed wetland systems? Ecological Engineering, 61, 555-563. https://doi.org/10.1016/j.ecoleng.2013.02.014, https://doi.org/10.1016/j.ecoleng.2013.02.014

Nivala, J., Brix, H., Bernhard, K., van Afferden, M., Müller, R. A., Headley, T. & Wallace, S. (2013). Comparative analysis of constructed wetlands: The design and construction of the ecotechnology research facility in Langenreichenbach, Germany. Ecological Engineering, 61, 527–543. https://doi.org/10.1016/j.ecoleng.2013.01.035

Lin, T., Ye, S., Ma, C., Ding, X., Brix, H., Yuan, H., Chen, Y. & Guo, Z. (2013). Sources and preservation of organic matter in soils of the wetlands in the Liaohe (Liao River) Delta, North China. Marine Pollution Bulletin, 71(1-2), 276-285. https://doi.org/10.1016/j.marpolbul.2013.01.036

Kanstrup, M., Holst, M. K., Jensen, P. M., Thomsen, I. K. & Christensen, B. T. (2014). Searching for long-term trends in prehistoric manuring practice. δ¹⁵N analyses of charred cereal grains from the 4th to the 1st millennium BC. Journal of Archaeological Science, 51, 115-125. https://doi.org/10.1016/j.jas.2013.04.018

Kragh, H. (2013). A quantum discontinuity. In W. L. Reiter & J. Yngvason (Eds.), Erwin Schrödinger: 50 Years After (pp. 135-152). European Mathematical Society. https://doi.org/10.4171/121

Kragh, H. (2013). Bohrs model for atomers og molekylers struktur. In L. Bruun, F. Aaserud & H. Kragh (Eds.), Bohr på Ny (pp. 111-124). Forlaget Epsilon.

Di Mauro, M. P., Cardini, D., Ventura, R., Stello, D., Beck, P. G., Davies, G., Elsworth, Y., García, R. A., Hekker, S., Mosser, B., Christensen-Dalsgaard, J., Bloemen, S., Catanzaro, G., De Smedt, K. & Tkachenko, A. (2013). Internal rotation of red giants by asteroseismology. In EPJ Web of Conferences (Vol. 43). EDP Sciences. https://doi.org/10.1051/epjconf/20134303012

Kragh, H. (2013). Perspektiver på Bohr. In L. Bruun, F. Aaserud & H. Kragh (Eds.), Bohr på ny (pp. 9-13). Forlaget Epsilon.

Kragh, H. (2013). Den videre udvikling af Bohrs atomteori. In L. Bruun, F. Aaserud & H. Kragh (Eds.), Bohr på ny (pp. 125-138). Forlaget Epsilon.

Borucki, W. J., Agol, E., Fressin, F., Kaltenegger, L., Rowe, J., Isaacson, H., Fischer, D., Batalha, N., Lissauer, J. J., Marcy, G. W., Fabrycky, D., Désert, J.-M., Bryson, S. T., Barclay, T., Bastien, F., Boss, A., Brugamyer, E., Buchhave, L. A., Burke, C. ... Winn, J. N. (2013). Kepler-62: A five-planet system with planets of 1.4 and 1.6 Earth radii in the habitable zone. Science, 340(6132), 587-590. https://doi.org/10.1126/science.1234702

Chen, D., Yao, Y., Wei, Z., Tu, P., Liu, B., Zhang, S. & Dong, M. (2013). Determining the structural preferences of dimannosides through the linkage constraint and hydrogen-bonded network. Computational and Theoretical Chemistry, 1010, 45-52. https://doi.org/10.1016/j.comptc.2013.01.011

Busuttil, K., Rotaru, A., Dong, M., Besenbacher, F. & Gothelf, K. V. (2013). Transfer of a protein pattern from self-assembled DNA origami to a functionalized substrate. Chemical Communications, 49(19), 1927-1929. https://doi.org/10.1039/c3cc37408d

Lazar, P., Zhang, S., Šafářová, K., Li, Q., Froning, J. P., Granatier, J., Hobza, P., Zbořil, R., Besenbacher, F., Dong, M. & Otyepka, M. (2013). Quantification of the interaction forces between metals and graphene by quantum chemical calculations and dynamic force measurements under ambient conditions. ACS Nano, 7(2), 1646-1651. https://doi.org/10.1021/nn305608a