Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Meldgaard, S. A., Kolsbjerg, E. L. & Hammer, B. (2018). Machine learning enhanced global optimization by clustering local environments to enable bundled atomic energies. Journal of Chemical Physics, 149(13), Article 134104. https://doi.org/10.1063/1.5048290

Riede, F., Hoye, T. T., Tejsner, P., Veldhuis, D. & Willerslev, R. (2018). Special Section Introduction: Socioecological Disequilibrium in the Circumpolar North. Human Ecology, 46(5), 615-620. https://doi.org/10.1007/s10745-018-0009-8

Eiserhardt, W. L., Dransfield, J., Rakotoarinivo, M. & Baker, W. J. (2018). Four new species of Dypsis (Arecaceae: Arecoideae) from Madagascar. Kew Bulletin, 73(4), Article 44. https://doi.org/10.1007/s12225-018-9776-z

Yue, K., Garcia-Palacios, P., Parsons, S. A., Yang, W., Peng, Y., Tan, B., Huang, C. & Wu, F. (2018). Assessing the temporal dynamics of aquatic and terrestrial litter decomposition in an alpine forest. Functional Ecology, 32(10), 2464-2475. https://doi.org/10.1111/1365-2435.13143

Greibe, E., Nymark, O., Fedosov, S., Heegaard, C. W. & Nexø, E. (2018). Differences in tissue distribution of cyano-B12 and hydroxo-B12 one week after oral intake: An experimental study in male Wistar rats. Nutrients, 10(10), Article 1487. https://doi.org/10.3390/nu10101487

Fiandaca, G., Madsen, L. M. & Maurya, P. K. (2018). Re-parameterisations of the Cole-Cole model for improved spectral inversion of induced polarization data. Near Surface Geophysics, 16(4), 385-399. https://doi.org/10.3997/1873-0604.2017065

Salgado, J., Sayer, C. D., Brooks, S. J., Davidson, T. A., Goldsmith, B., Patmore, I. R., Baker, A. G. & Okamura, B. (2018). Eutrophication homogenizes shallow lake macrophyte assemblages over space and time. Ecosphere, 9(9), Article e02406. https://doi.org/10.1002/ecs2.2406

Koch, B. E. V., Yang, S., Lamers, G., Stougaard, J. & Spaink, H. P. (2018). Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88. Nature Communications, 9(1), Article 4099. https://doi.org/10.1038/s41467-018-06658-4

Flygaard, R. K., Boegholm, N., Yusupov, M. & Jenner, L. B. (2018). Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism. Nature Communications, 9(1), Article 4179. https://doi.org/10.1038/s41467-018-06724-x

Lykke-Andersen, S., Ardal, B. K., Hollensen, A. K., Damgaard, C. K. & Jensen, T. H. (2018). Box C/D snoRNP Autoregulation by a cis-Acting snoRNA in the NOP56 Pre-mRNA. Molecular Cell, 72(1), 99-111.e5. https://doi.org/10.1016/j.molcel.2018.08.017

Saleem, M. A., Soares da Costa, F., Dolog, P., Karras, P., Pedersen, T. B. & Calders, T. (2018). Predicting Visitors Using Location-Based Social Networks. In Proceedings - 2018 IEEE 19th International Conference on Mobile Data Management, MDM 2018 (pp. 245-250). IEEE. https://doi.org/10.1109/MDM.2018.00043

Shliaha, P. V., Gibb, S., Gorshkov, V., Jespersen, M. S., Andersen, G. R., Bailey, D., Schwartz, J., Eliuk, S., Schwämmle, V. & Jensen, O. N. (2018). Maximizing Sequence Coverage in Top-Down Proteomics by Automated Multimodal Gas-Phase Protein Fragmentation. Analytical Chemistry, 90(21), 12519-12526. https://doi.org/10.1021/acs.analchem.8b02344

Jacobs, S., Wavreil, F., Schepens, B., Gad, H. H., Hartmann, R., Rocha-Pereira, J., Neyts, J., Saelens, X. & Michiels, T. (2018). Species Specificity of Type III Interferon Activity and Development of a Sensitive Luciferase-Based Bioassay for Quantitation of Mouse Interferon-λ. Journal of Interferon & Cytokine Research, 38(11), 469–479. https://doi.org/10.1089/jir.2018.0066

Liu, A. L., Jiang, M. R., Ulrich, T., Zhang, J. & Zhang, X. J. (2018). Ore genesis of the Bake gold deposit, southeastern Guizhou province, China: Constraints from mineralogy, in-situ trace element and sulfur isotope analysis of pyrite. Ore Geology Reviews, 102, 740-756. https://doi.org/10.1016/j.oregeorev.2018.09.018

Irons, T. P., McPherson, B. J. O. L. & Kass, M. A. (2018). Reliable noise measure in time-gated NMR data. Geophysical Journal International, 215(2), 959-964. https://doi.org/10.1093/GJI/GGY318

Raskin, G., Delabie, T., De Munter, W., Sana, H., Vandenbussche, B., Vandoren, B., Antoci, V., Kjeldsen, H., Karoff, C., De Koter, A., Désert, J. M., Mladenov, T. & Vandepitte, D. (2018). CUBESPEC: Low-cost space-based astronomical spectroscopy. In Space Telescopes and Instrumentation 2018: Optical, Infrared, and Millimeter Wave (Vol. 10698). Article 106985R SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2314074

Kähler, S. & Olsen, J. (2018). Dynamic correlation for non-orthogonal reference states: Improved perturbational and variational methods. Journal of Chemical Physics, 149(14), Article 144104. https://doi.org/10.1063/1.5049706

Vilhelmsen, T. N., Christiansen, A. V., Frederiksen, R. R., Christensen, S. & Auken, E. (2018). Geofysisk kortlægning af terrænnære strukturer og deres betydning for grundvandet. Abstract from Hydrologidag 2018, Odense, Denmark. http://www.hydrologidag.dk/images/stories/Hydrologidag2018/Vilhelmsen_hydrologidagaen_2018.pdf

Vilhelmsen, T. N., Auken, E., Christiansen, A. V., Barfod, A., Foged, N., Pedersen, J. B. & Maurya, P. K. (2018). Quantification of subsurface structural uncertainty in groundwater models using 3D geophysical data. Abstract from Computational Methods in Water Resources 2018, Saint Malo, France.

Vilhelmsen, T. N., Christensen, S., Frederiksen, R. R., Auken, E., Fienen, M. N. & Leaf, A. (2018). Script based groundwater modelling for increased model flexibility and improved analysis. Abstract from 12th Annual Water Research Meeting of DWF, Lyngby, Denmark.

Vilhelmsen, T. N., Christensen, S., Frederiksen, R. R., Auken, E. & Christiansen, A. V. (2018). Gentænk grundvandsmodellering - nye metoder til effektiv modeludvikling. Abstract from ATV Vintermøde 2018, Bredsten, Denmark.

Wang, Z., Wu, H. H., Li, Q., Besenbacher, F., Zeng, X. C. & Dong, M. (2018). Self-scrolling MoS₂ metallic wires. Nanoscale, 10(38), 18178-18185. https://doi.org/10.1039/c8nr04611e

Sørensen, L. & Salbo, R. (2018). Optimized Workflow for Selecting Peptides for HDX-MS Data Analyses. Journal of The American Society for Mass Spectrometry, 29(11), 2278-2281. https://doi.org/10.1007/s13361-018-2056-1

Skydsgaard, M. A. (2018). Nekrolog. Fuldblodsforskerens heldige valg. Weekendavisen, 1.

Lillethorup, T. P., GLUD, AN., Alstrup, A. K. O., Noer, O., Nielsen, E. H. T., Schacht, A. C., Landeck, N., Kirik, D., Orlowski, D., Sørensen, J. C. H., Doudet, D. J. & Landau, A. (2018). Longitudinal monoaminergic PET imaging of chronic proteasome inhibition in minipigs. Scientific Reports, 8(1), Article 15715. https://doi.org/10.1038/s41598-018-34084-5

Diaconescu, D.-E., Sheshmani, A. & Yau, S.-T. (2018). Atiyah class and sheaf counting on local Calabi Yau fourfolds. Advances in Mathematics, 368(2020).

Kirsebom, O. S., Tengblad, O., Lica, R., Munch, M., Riisager, K., Fynbo, H. O. U., Borge, M. J. G., Madurga, M., Marroquin, I., Andreyev, A. N., Berry, T. A., Christensen, E. R., Fernández, P. D., Doherty, D. T., Van Duppen, P., Fraile, L. M., Gallardo, M. C., Greenlees, P. T., Harkness-Brennan, L. J. ... De Witte, H. (2018). First Accurate Normalization of the β -delayed α Decay of ¹⁶N and Implications for the ¹²C (α,γ) ¹⁶O Astrophysical Reaction Rate. Physical Review Letters, 121(14), Article 142701. https://doi.org/10.1103/PhysRevLett.121.142701

Møller, E. F., Sejr, M. K., Mosbech, A. & Nielsen, T. G. (2018). Zooplankton in Changing Arctic Seas: Examples from West Greenland Ecosystems. 1903. Abstract from POLAR2018, Davos, Switzerland. https://www.polar2018.org/uploads/2/4/6/0/24605948/polar2018_abstractproceedings.pdf

Ernst, P., Asmussen, S. & Hasenbein, J. (2018). Stability and busy periods in a multiclass queue with state-dependent arrival rates. Queueing Systems, 90(3-4), 207-224. https://doi.org/10.1007/s11134-018-9587-9

Pedersen, B. & Nielsen, S. B. (2018). Gas-phase Ion Spectroscopy of Flexible and Nonflexible Nitrophenolates: Effect of Locking the Two Phenyl Units in 4’-nitro-[1,1’-biphenyl]-4-olate by a Bridging Atom. Journal of Self-Assembly and Molecular Electronics, 6, 1-12. Article 1. https://doi.org/10.13052/jsame2245-4551.6.001

Kristiansen, S. M. & Tjelldén, A. K. E. (2019). Preservation of organic macromolecules in situ: New evidence from Iron Age warrior bones in a Danish wetland, Alken Enge.. Abstract from 13 th Scientific Conference on the Application Scientific
Methods in Archaeology , Stavanger, Norway. https://am.uis.no/getfile.php/13484465/Arkeologisk%20museum/2019/PDF/Abstract%20book_100119_smia.pdf

Kristiansen, S. M., Sulas, F., Olsen, J., Raja, R. & Sindbæk, S. M. (2019). Best practice pre-excavation and geoarchaeology methods for identifying on-site activities in tropical, arid and temperate climates. Abstract from 13th Scientific Conference on the Application Scientific Methods in Archaeology, Stavanger, Norway.

Sulas, F., Kristiansen, S. M. & Scott, D. (2018). Multiscalar archaeology and Viking Landscape: A bottom-up approach to Borgring. Abstract from Environmental Archaeology Conference , Aarhus, Denmark. http://conferences.au.dk/fileadmin/conferences/2018/AEA2018/Final_conference_programme_AEA_AARHUS2018.pdf

Zernack, A. V., Riede, F., Kueppers, U., Enevold, R., Kristiansen, S. M. & Tegner, C. (2018). The influence of post-depositional processes on distal tephra beds: A case study of the 12,900 BP Laacher See Tephra at Paddenluch outcrop, northeastern Germany. Cities and Volcanoes – COV10. Abstract from Cities and Volcanoes, Napoli, Italy.

Løvschal, M., Kristiansen, S. M. & Nielsen, N. H. (2018). New currents in the chronology of Celtic fields in southern Scandinavia. Landscape archaeology.. Abstract from Landscape Archaeology Conference, Newcastle, United Kingdom. https://www.ncl.ac.uk/media/wwwnclacuk/mccordcentre/files/LAC2018_ConferenceBooklet.pdf

Mølmer, K. (2018). The Quantum Vibes of Atoms and Ichthyosaurs. Musicology, 24, 51-59. http://www.doiserbia.nb.rs/Article.aspx?ID=1450-98141824051M

Kiilerich, A. H., De Pasquale, A. & Giovannetti, V. (2018). Dynamical approach to ancilla-assisted quantum thermometry. Physical Review A, 98(4), Article 042124. https://doi.org/10.1103/PhysRevA.98.042124

Fernández-Méndez, M., Olsen, L. M., Kauko, H. M., Meyer, A., Rösel, A., Merkouriadi, I., Mundy, C. J., Ehn, J. K., Johansson, A. M., Wagner, P. M., Ervik, Å., Sorrell, B. K., Duarte, P., Wold, A., Hop, H. & Assmy, P. (2018). Algal hot spots in a changing Arctic Ocean: Sea-ice ridges and the snow-ice interface. Frontiers in Marine Science, 5, Article 75. https://doi.org/10.3389/fmars.2018.00075

Kristiansen, S. M. (2018). Nye naturvidenskabelige metoder til paleo-landsskabsforståelse og forundersøgelser: eksempler og perspektiver.. Abstract from Organisationen af Danske Museer faglig orientering, Vejle, Denmark.

Tsikou, D., Yan, Z., Holt, D. B., Abel, N. B., Reid, D. E., Madsen, L. H., Bhasin, H., Sexauer, M., Stougaard, J. & Markmann, K. (2018). Systemic control of legume susceptibility to rhizobial infection by a mobile microRNA. Science, 362(6411), 233-236. https://doi.org/10.1126/science.aat6907

Poulsen, P., Kristiansen, S. M. & Ljungberg, T. (2018). Ekstensiv, dynamisk og kort – førromersk agerbrug ved Sundbybakkens fod nord for Aalborg. Abstract from Organisationen af Danske Museer faglig orientering, Vejle, Denmark. http://www.dkmuseer.dk/sites/default/files/dokumenter/J28ProgramIndbydelseAlleVejle18.pdf

Sulas, F. & Kristiansen, S. M. (2018). The devil is in the detail: micromorphological evidence from the burnt gates and the rampart’s sod. Abstract from Borgring Seminar, København, Denmark. https://saxo.ku.dk/forskning/seed-money-saxo/vikingetid/borgring_conference__2018_programme.pdf

Tezza, S., Ben Nasr, M., D'Addio, F., Vergani, A., Usuelli, V., Falzoni, S., Bassi, R., Dellepiane, S., Fotino, C., Rossi, C., Maestroni, A., Solini, A., Corradi, D., Giani, E., Mameli, C., Bertuzzi, F., Pezzolesi, M. G., Wasserfall, C. H., Atkinson, M. A. ... Fiorina, P. (2018). Islet-Derived eATP Fuels Autoreactive CD8+ T Cells and Facilitates the Onset of Type 1 Diabetes. Diabetes, 67(10), 2038-2053. https://doi.org/10.2337/db17-1227

Kristiansen, S. M., Stott, D., Ljungberg, T. & Christiansen, A. V. (2018). Don’t touch this! Non-destructive investigations at Borgring. Abstract from The Bogring Conference, Copenhagen, Denmark. https://saxo.ku.dk/forskning/seed-money-saxo/vikingetid/borgring_conference__2018_programme.pdf

Kristiansen, S. M. (2018). Havebrug og fødevaresikkerhed i Danmarks forhistorie. Abstract from NatArk møde - ressourceudnyttelse, Højbjerg, Denmark.

Kristiansen, S. M. (2018). Non-destruktive investigations at Borgring. På: Vikingetidens ringborge: status og perspektiver. Abstract from MCH seminar, Højbjerg, Denmark.

Christensen, H. B. (2018). Crunch: Automated Assessment of Microservice Architecture Assignments with Formative Feedback. In C. E. Cuesta, J. Perez & D. Garlan (Eds.), Software Architecture - 12th European Conference on Software Architecture, ECSA 2018, Proceedings: 12th European Conference on Software Architecture, ECSA 2018 (Vol. 11048, pp. 175-190). Springer. https://doi.org/10.1007/978-3-030-00761-4_12

Tsirogiannis, C., Staals, F. & Pellissier, V. (2018). Computing the expected value and variance of geometric measures. ACM Journal of Experimental Algorithmics, 23(1), 2.4:1-2.4:32. Article 2.4. https://doi.org/10.1145/3228331