Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Rasmussen, A. M., Okholm, T. L. H., Knudsen, M., Vang, S., Dyrskjøt, L., Hansen, T. B. & Pedersen, J. S. (2023). Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer. NAR cancer, 5(3), Article zcad041. https://doi.org/10.1093/narcan/zcad041

Alexander, G. J. & Wang, T. (2023). Snake foraging ecology and digestive physiology: Integrative biology and evolving paradigms. In D. Penning (Ed.), Snakes: Morphology, Function, and Ecology (pp. 313-342). Nova Science Publishers. https://doi.org/10.52305/YHUZ3307

Govande, A. A., Babnis, A. W., Urban, C., Habjan, M., Hartmann, R., Kranzusch, P. J. & Pichlmair, A. (2023). RNase L-activating 2'-5' oligoadenylates bind ABCF1, ABCF3 and Decr-1. The Journal of general virology, 104(9), Article 104:001890. https://doi.org/10.1099/jgv.0.001890

Knattrup, Y., Kubečka, J. & Elm, J. (2023). Nitric Acid and Organic Acids Suppress the Role of Methanesulfonic Acid in Atmospheric New Particle Formation. The Journal of Physical Chemistry A, 127(36), 7568-7578. https://doi.org/10.1021/acs.jpca.3c04393

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Thodberg, K., Petersen, D. L. S. & Herskin, M. S. (2023). Effects of journey duration and temperature during pre-slaughter transport on behaviour of cull sows in lairage. Research in Veterinary Science, 164, Article 105016. https://doi.org/10.1016/j.rvsc.2023.105016

Keller, H., Orlandi, C., Paskin-Cherniavsky, A. & Ravi, D. (2023). MPC with Low Bottleneck-Complexity: Information-Theoretic Security and More. In K.-M. Chung (Ed.), 4th Conference on Information-Theoretic Cryptography, ITC 2023 (pp. 11:1-11:22). Article 11 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ITC.2023.11

Yesiltas, B., Garcia-Moreno, P. J., Sørensen, A.-D. M., Banerjee, C., Anankanbil, S., Guo, Z., Ogilby, P. R. & Jacobsen, C. (2023). The Use of Soy and Egg Phosphatidylcholines Modified with Caffeic Acid Enhances the Oxidative Stability of High-Fat (70%) Fish Oil-in-Water Emulsions. Colloids and Interfaces , 7(3), Article 60. https://doi.org/10.3390/colloids7030060

Li, F., Gu, W., Gao, Q., Tan, Y., Li, C., Sonne, C., Li, J. & Kim, K. H. (2023). Scalable Underwater Adhesives with High-Strength, Long-Term, and Harsh-Environment Adhesion Enabled by Heterocyclic Chemistry. ACS Applied Materials & Interfaces, 15(31), 37925-37935. https://doi.org/10.1021/acsami.3c07112

Khalil, V., Faress, I., Mermet-Joret, N., Kerwin, P., Yonehara, K. & Nabavi, S. (2023). Subcortico-amygdala pathway processes innate and learned threats. eLife, 12, Article e85459. https://doi.org/10.7554/eLife.85459

Damgård, I., Escudero, D. & Polychroniadou, A. (2023). Phoenix: Secure Computation in an Unstable Network with Dropouts and Comebacks. In K.-M. Chung (Ed.), 4th Conference on Information-Theoretic Cryptography, ITC 2023 (pp. 7:1--7:21). Article 7 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ITC.2023.7

Damgård, I., Ravi, D., Tschudi, D. & Yakoubov, S. (2023). Secure Communication in Dynamic Incomplete Networks. In K.-M. Chung (Ed.), 4th Conference on Information-Theoretic Cryptography, ITC 2023 (pp. 13:1--13:21). Article 13 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ITC.2023.13

Grünewald, T. A., Johannes, A., Wittig, N. K., Palle, J., Rack, A., Burghammer, M. & Birkedal, H. (2023). Erratum: Bone mineral properties and 3D orientation of human lamellar bone around cement lines and the Haversian system . IUCrJ, 10(Part 3), 376-376. https://doi.org/10.1107/S2052252523002695

Madsen, M., Starup, J. L. & Lutze, M. (2023). Restrictable Variants: A Simple and Practical Alternative to Extensible Variants. In K. Ali & G. Salvaneschi (Eds.), 37th European Conference on Object-Oriented Programming, ECOOP 2023 (pp. 17:1-17:27). Article 17 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ECOOP.2023.17

Sneftrup, P. S., Møller, S. H. & Balling, P. (2023). Model of ultrashort-pulse laser excitation of bulk and thin film dielectrics: Coupling material excitation and electric field propagation. Physical Review B, 108(9), Article 094307. https://doi.org/10.1103/PhysRevB.108.094307

Asmael, N., Dupuy, A., McLachlan, P. & Franceschi, M. (2023). Hydro-Geochemical Characteristics of the Shallow Alluvial Aquifer and Its Potential Artificial Recharge to Sustain the Low Flow of the Garonne River. Water (Switzerland), 15(16), Article 2972. https://doi.org/10.3390/w15162972

Starup, J. L., Madsen, M. & Lhoták, O. (2023). Breaking the Negative Cycle: Exploring the Design Space of Stratification for First-Class Datalog Constraints. In K. Ali & G. Salvaneschi (Eds.), 37th European Conference on Object-Oriented Programming, ECOOP 2023 Article 31 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ECOOP.2023.31

Larsen, K. G., Obremski, M. & Simkin, M. (2023). Distributed Shuffling in Adversarial Environments. In K.-M. Chung (Ed.), 4th Conference on Information-Theoretic Cryptography, ITC 2023 Article 10 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ITC.2023.10

Petrov, P. P., Grankin, K. N., Babina, E. V., Artemenko, S. A., Romanova, M. M., Gorda, S. Y., Djupvik, A. A. & Gameiro, J. F. (2023). Density streams in the disc winds of Classical T Tauri stars. Monthly Notices of the Royal Astronomical Society, 524(4), 5944-5953. https://doi.org/10.1093/mnras/stad2252

Geelhoed, J. S., Thorup, C. A., Bjerg, J. J., Schreiber, L., Nielsen, L. P., Schramm, A., Meysman, F. J. R. & Marshall, I. P. G. (2023). Indications for a genetic basis for big bacteria and description of the giant cable bacterium Candidatus Electrothrix gigas sp. nov. Microbiology Spectrum, 11(5), Article e00538-23. https://doi.org/10.1128/spectrum.00538-23

Li, Q., Si, R., Guo, S., Waqas, M. A. & Zhang, B. (2023). Externalities of Pesticides and Their Internalization in the Wheat–Maize Cropping System—A Case Study in China’s Northern Plains. Sustainability (Switzerland), 15(16), Article 12365. https://doi.org/10.3390/su151612365

Reeves, R. R., Pedersen, J. B., Brakenrig, T., Maurya, P. K., McGovern, L., Moorhead, B. & Cedar, A. (2023). Application of towed TEM to geothermal areas of New Zealand. Geothermics, 114, Article 102800. https://doi.org/10.1016/j.geothermics.2023.102800

Nyhegn, J. H., Bruun, G. M. & Nielsen, K. K. (2023). Wave function and spatial structure of polarons in an antiferromagnetic bilayer. Physical Review B, 108(7), Article 075141. https://doi.org/10.1103/PhysRevB.108.075141

Charmouh, A. P., Bocedi, G. & Hartfield, M. (2023). Inferring the distributions of fitness effects and proportions of strongly deleterious mutations. G3: Genes, Genomes, Genetics, 13(9), Article jkad140. https://doi.org/10.1093/g3journal/jkad140

Chen, X., Roeters, S. J., Cavanna, F., Alvarado, J. & Baiz, C. R. (2023). Crowding alters F-actin secondary structure and hydration. Communications Biology, 6(1), Article 900. https://doi.org/10.1038/s42003-023-05274-3

Berner, L. T., Assmann, J. J., Normand, S. & Goetz, S. J. (2023). ‘LandsatTS': an R package to facilitate retrieval, cleaning, cross-calibration, and phenological modeling of Landsat time series data. Ecography, 2023(9), Article e06768. https://doi.org/10.1111/ecog.06768

Sokač, M., Kjær, A., Dyrskjøt, L., Haibe-Kains, B., Jwl Aerts, H. & Birkbak, N. J. (2023). Spatial transformation of multi-omics data unlocks novel insights into cancer biology. eLife, 12, Article RP87133. https://doi.org/10.7554/eLife.87133

Evangelista Belo, J. M., Wissing, J., Feuchtner, T. & Grønbæk, K. (2023). CADTrack: Instructions and Support for Orientation Disambiguation of Near-Symmetrical Objects. In V. Mäkelä, A. Lucero, F. Alt & M. Hancock (Eds.), Proceedings of the ACM on Human-Computer Interaction Article 426 Association for Computing Machinery. https://doi.org/10.1145/3626462

Grønbæk, K. (2023). Har kunstig intelligens gjort os bange for vores egen skygge? In sciencereport.dk

Tang, C.-C., Zhang, M., Wang, B., Zou, Z.-S., Yao, X.-Y., Zhou, A.-J., Liu, W., Ren, Y.-X., Li, Z.-H., Wang, A. & He, Z.-W. (2023). Contribution identification of hydrolyzed products of potassium ferrate on promoting short-chain fatty acids production from waste activated sludge. Journal of Environmental Management, 345, Article 118886. https://doi.org/10.1016/j.jenvman.2023.118886

Lunding, R. S., Lystbæk, M. N., Feuchtner, T. & Grønbæk, K. (2023). AR-supported Human-Robot Collaboration: Facilitating Workspace Awareness and Parallelised Assembly Tasks. In G. Bruder, A.-H. Olivier, A. Cunningham, E. Y. Peng, J. Grubert & I. Williams (Eds.), Proceedings - 2023 IEEE International Symposium on Mixed and Augmented Reality, ISMAR 2023 (pp. 1064-1073). IEEE. https://doi.org/10.1109/ISMAR59233.2023.00123

Sturm, J. A., McClure, M. K., Law, C. J., Harsono, D., Bergner, J. B., Dartois, E., Drozdovskaya, M. N., Ioppolo, S., Öberg, K. I., Palumbo, M. E., Pendleton, Y. J., Rocha, W. R. M., Terada, H. & Urso, R. G. (2023). The edge-on protoplanetary disk HH 48 NE: I. Modeling the geometry and stellar parameters. Astronomy and Astrophysics, 677, Article A17. https://doi.org/10.1051/0004-6361/202346052

Arends, C., Wolf, L., Meinecke, J., Barkhofen, S., Weich, T. & Bartley, T. (2024). Decomposing large unitaries into multimode devices of arbitrary size. Physical Review Research , 6(1), Article L012043 . https://doi.org/10.1103/PhysRevResearch.6.L012043

Concepción, O., Søgaard, N. B., Bae, J. H., Yamamoto, Y., Tiedemann, A. T., Ikonic, Z., Capellini, G., Zhao, Q. T., Grützmacher, D. & Buca, D. (2023). Isothermal Heteroepitaxy of Ge_1-xSn_x Structures for Electronic and Photonic Applications. ACS Applied Electronic Materials, 5(4), 2268-2275. https://doi.org/10.1021/acsaelm.3c00112

Berntsson, E., Vosough, F., Noormägi, A., Padari, K., Asplund, F., Gielnik, M., Paul, S., Jarvet, J., Tõugu, V., Roos, P. M., Kozak, M., Gräslund, A., Barth, A., Pooga, M., Palumaa, P. & Wärmländer, S. K. T. S. (2023). Characterization of Uranyl (UO₂²⁺) Ion Binding to Amyloid Beta (Aβ) Peptides: Effects on Aβ Structure and Aggregation. ACS Chemical Neuroscience, 14(15), 2618-2633. https://doi.org/10.1021/acschemneuro.3c00130

Larsen, T. V., Daugaard, T. F., Gad, H. H., Hartmann, R. & Nielsen, A. L. (2023). PD-L1 and PD-L2 immune checkpoint protein induction by type III interferon in non-small cell lung cancer cells. Immunobiology, 228(3), Article 152389. https://doi.org/10.1016/j.imbio.2023.152389

Pitteloud, Q., Wind, P., Jensen, S. R., Frediani, L. & Jensen, F. (2023). Quantifying Intramolecular Basis Set Superposition Errors. Journal of Chemical Theory and Computation, 19(17), 5863-5871. https://doi.org/10.1021/acs.jctc.3c00693

Roeters, S. J., Strunge, K., Pedersen, K. B., Golbek, T. W., Bregnhøj, M., Zhang, Y., Wang, Y., Dong, M., Nielsen, J., Otzen, D. E., Schiøtt, B. & Weidner, T. (2023). Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces. Nature Communications, 14(1), Article 5731. https://doi.org/10.1038/s41467-023-39843-1

Pedersen, K., Christensen, L. G. & Jensen, H. H. (2023). Formation of β-Configured Thioglycosides of D-Glucosamine and D-Galactosamine and Synthesis of Protected Human Milk Oligosaccharides. Journal of Organic Chemistry, 88(17), 12531–12541. https://doi.org/10.1021/acs.joc.3c01267

Grinderslev, J. B., Skov, L. N. & Jensen, T. R. (2023). Hemi-methylamine lithium borohydride as electrolyte for all-solid-state batteries. Journal of Materials Chemistry A, 11(35), 18901–18910. https://doi.org/10.1039/d3ta03911k

Skov, L. N., Grinderslev, J. B. & Jensen, T. R. (2023). Layered Titanium Sulfide Cathode for All-Solid-State Magnesium Batteries. Batteries & Supercaps, 6(8), Article e202300185. https://doi.org/10.1002/batt.202300185

Asiedu, D. A., Søndergaard, J., Jonasdottir, S., Juul-Pedersen, T. & Koski, M. (2023). Concentration of mercury and other metals in an Arctic planktonic food web under a climate warming scenario. Marine Pollution Bulletin, 194(Part B), Article 115436. https://doi.org/10.1016/j.marpolbul.2023.115436, https://doi.org/10.1016/j.marpolbul.2023.115436

Walker, T. W. N., Schrodt, F., Allard, P. M., Defossez, E., Jassey, V. E. J., Schuman, M. C., Alexander, J. M., Baines, O., Baldy, V., Bardgett, R. D., Capdevila, P., Coley, P. D., van Dam, N. M., David, B., Descombes, P., Endara, M. J., Fernandez, C., Forrister, D., Gargallo-Garriga, A. ... Peñuelas, J. (2023). Leaf metabolic traits reveal hidden dimensions of plant form and function. Science Advances, 9(35), Article eadi4029. https://doi.org/10.1126/sciadv.adi4029

Asif, M. R., Maurya, P. K., Foged, N. & Christiansen, A. V. (2023). A DATA DRIVEN APPROACH FOR ROBUST INVERSION OF INDUCED POLARIZATION EFFECTS IN TRANSIENT ELECTROMAGNETIC DATA. In APPLICATION OF GEOPHYSICS TO ENGINEERING AND ENVIRONMENTAL PROBLEMS: SYMPOSIUM. 35TH 2023. (SAGEEP 2023) (pp. 82-82). Curran Associates.

Foskolou, I. P., Cunha, P. P., Sánchez-López, E., Minogue, E. A., Nicolet, B. P., Guislain, A., Jorgensen, C., Kostidis, S., Zandhuis, N. D., Barbieri, L., Bargiela, D., Nathanael, D., Tyrakis, P. A., Palazon, A., Giera, M., Wolkers, M. C. & Johnson, R. S. (2023). The two enantiomers of 2-hydroxyglutarate differentially regulate cytotoxic T cell function. Cell Reports, 42(9), Article 113013. https://doi.org/10.1016/j.celrep.2023.113013

Fetherolf, T., Pepper, J., Simpson, E., Kane, S. R., Močnik, T., English, J. E., Antoci, V., Huber, D., Jenkins, J. M., Stassun, K., Twicken, J. D., Vanderspek, R. & Winn, J. N. (2023). Variability Catalog of Stars Observed during the TESS Prime Mission. Astrophysical Journal Supplement Series, 268(1), Article 4. https://doi.org/10.3847/1538-4365/acdee5

Kisistók, J., Christensen, D. S., Rasmussen, M. H., Duval, L., Aggerholm-Pedersen, N., Luczak, A. A., Sorensen, B. S., Jakobsen, M. R., Oellegaard, T. H. & Birkbak, N. J. (2023). Analysis of circulating tumor DNA during checkpoint inhibition in metastatic melanoma using a tumor-agnostic panel. Melanoma Research, 33(5), 364-374. https://doi.org/10.1097/CMR.0000000000000903

Szołdra, T., Ciappina, M. F., Werby, N., Bucksbaum, P. H., Lewenstein, M., Zakrzewski, J. & Maxwell, A. S. (2023). Femtosecond pulse parameter estimation from photoelectron momenta using machine learning. New Journal of Physics, 25(8), Article 083039. https://doi.org/10.1088/1367-2630/acee19

Magnard, N. P. L., Kirsch, A., Jørgensen, M. R. V., Kantor, I., Sørensen, D. R., Huotari, S., Rudić, S., Bordallo, H. N. & Jensen, K. M. Ø. (2023). Control of H-Related Defects in γ-MnO₂ in a Hydrothermal Synthesis. Inorganic Chemistry, 62(32), 13021-13029. https://doi.org/10.1021/acs.inorgchem.3c01815

Sutinen, A., Jones, N. C., Hoffmann, S. V., Ruskamo, S. & Kursula, P. (2023). Conformational analysis of membrane-proximal segments of GDAP1 in a lipidic environment using synchrotron radiation suggests a mode of assembly at the mitochondrial outer membrane. Biophysical Chemistry, 303, Article 107113. https://doi.org/10.1016/j.bpc.2023.107113

Gabarra, L., Mancini, C., Rodriguez Muñoz, L., Rodighiero, G., Sirignano, C., Scodeggio, M., Talia, M., Dusini, S., Gillard, W., Granett, B. R., Maiorano, E., Moresco, M., Paganin, L., Palazzi, E., Pozzetti, L., Renzi, A., Rossetti, E., Vergani, D., Allevato, V. ... Euclid Collaboration (2023). Euclid preparation: XXX. Performance assessment of the NISP red grism through spectroscopic simulations for the wide and deep surveys. Astronomy and Astrophysics, 676, Article A34. https://doi.org/10.1051/0004-6361/202346177

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