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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Petersen, M. G., Ludvigsen, M., Grønbæk, K. & Nielsen, K. R. (2007). Designing for Co-located Social Media Use in the Home - Using the CASOME Infrastructure. In A. Venkatesh, T. Gonsalves, A. Monk & K. Buckner (Eds.), Home Informatics and Telematics: ICT for the Next Billion (pp. 251-267). Springer. https://doi.org/10.1007/978-0-387-73697-6_19
Møller, H. H., Dahl, M. R. & Grønbæk, K. (2007). EKGAR: Augmented Reality Support for Learning of Electrocardiography (ECG) Analysis. In Proceedings of World Conference on Educational Multimedia, Hypermedia and Telecommunications 2007 Association for the Advancement of Computing in Education.
Grønbæk, K. (2006, Sept 5). It og læring i bevægelse. EMU - Danmarks Læringsportal.
Mendling, J., Lassen, K. B. & Zdun, U. (2006). Experiences in enhancing existing BPM Tools with BPEL Import and Export. In Proceedings of the 4th International Conference Business Process Management: LNCS (Vol. 4102, pp. 348-357). Springer.
Westergaard, M. & Lassen, K. B. (2006). The BRITNeY Suite Animation Tool. In Petri Nets and Other Models of Concurrency ICATPN 2006 (Vol. 4024, pp. 331-340). Springer.
Lassen, K. B. (2006). Translating BPEL to FLOWer. (pp. 1-24). Aarhus Universitetsforlag.
Lassen, K. B. & Westergaard, M. (2006). Embedding Java Types in CPN Tools: Technical Report. http://www.daimi.au.dk/~krell/download.php?file=Embedding Java Types in CPN Tools.pdf.
Thomsen, K. & Manuilov, V. (2006). The group of unital C*-extensions. In B. Bojarski, A. Mishchenko & A. Weber (Eds.), C*-algebras and Elliptic Theory (pp. 151-156). Birkhäuser Verlag.
Lassen, K. B., van Dongen, B. & van der Aalst, W. M. P. (2007). Translating Message Sequence Charts to other Process Languages using Process Mining. (207 ed.) (pp. 1-15). Eindhoven Technical University.
Kramp, G., Kristensen, M. & Pedersen, J. F. (2007). Physical and Digital Design of the BlueBio Biomonitoring System Prototype, to be used in Emergency Medical Response. In Proceedings on 1st International Conference on Pervasive Computing Technologies for Healthcare 2006 IEEE.
Fukuda, K., Jensen, A. N., Lauritzen, N. & Thomas, R. (2007). The generic Gröbner walk. Journal of Symbolic Computation, 42, 298-312. https://doi.org/10.1016/j.jsc.2006.09.004
Nielsen, M. & Krukow, K. (2007). Trust Structures. International Journal of Information Security, 6(2-3), 153-181.
Nielsen, M., Krukow, K. & Sassone, V. (2007). A Bayesian Model for Event-based Trust. Electronic Notes in Theoretical Computer Science, 172, 499-521. https://doi.org/10.1016/j.entcs.2007.02.017
Addison, W. N., Azari, F., Sørensen, E. S., Kaartinen, M. T. & McKee, M. D. (2007). Pyrophosphate inhibits mineralization of osteoblast cultures by binding to mineral, upregulating osteopontin and inhibiting alkaline phosphatase actvity. Journal of Biological Chemistry, 282, 15872-15883.
Lizotte, P., Hanford, LE., Enghild, J. J., Nozik-Grayck, E., Giles, BL. & Oury, TD. (2007). Developmental expression of the receptor for advanced glycation end-products (RAGE) and its response to hyperoxia in the neonatal rat lung. BMC Developmental Biology, 7(15).
Britz, D. & Strutwolf, J. (2007). Comparison of flux approximations in electrochemical digital simulation. Journal of Electroanalytical Chemistry, 602, 210-216.
Schramm, A., Revsbech, N. P., Dalsgaard, T., Piña-Ochoa, E., de la Torré, J. R., Stahl, D. A. & Risgaard-Petersen, N. (2006). Activity, Microenvironments, and Community Structure of Aerobic and Anaerobic Ammonium Oxidizing Prokaryotes in Estuarine Sediment (Randers Fjord, DK). In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11) (pp. 482). International Society for Microbial Ecology.
Stief, P., Nielsen, L. P., Revsbech, N. P. & Schramm, A. (2006). From the Gut of an Insect to the Global Climate: Denitrification and Nitrous Oxide Production inside Lake Chironomidae. In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11) (pp. 171). International Society for Microbial Ecology.
Krieger, B., Schwermer, C. U., Rezakhani, N., Horn, M. A., Gieseke, A., Cytryn, E., Dror, M., van Rijn, J., Drake, H. L. & Schramm, A. (2006). Diversity of Nitrate-Reducing and Denitrifying Bacteria in a Marine Aquaculture Biofilter and their Response to Sulfide. In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11) (pp. 270). International Society for Microbial Ecology.
Abildgaard, L., Engberg, R. M., Schramm, A. & Højberg, O. (2006). Quantitative Detection of Clostridium perfringens in Broiler Chickens by Real-Time PCR Targeting the Alpha-Toxin Gene. In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11) (pp. 441). International Society for Microbial Ecology.
Schwermer, C. U., Krieger, B., Lavik, G., Schramm, A., van Rijn, J., de Beer, D., Minz, D., Cyctryn, E., Kuypers, M. M. M. & Gieseke, A. (2006). Impact of Sulfide on Nitrate Conversion in Eutrophic Nitrate-Rich Marine Sludge. In The Hidden Powers - Microbial Communities in Action. Proceedings of the 11th International Symposium on Microbial Ecology (ISME-11) (pp. 266). International Society for Microbial Ecology.
Kofoed, M. V., Stief, P., Poulsen, M. & Schramm, A. (2007). In situ detection of denitrifying bacteria by mRNA-targeted nucleic acid probes and catalyzed reporter deposition. Poster session presented at Annual Conference of the Association for General and Applied Microbiology (VAAM), Osnabrück, Germany.
Herrmann, M. & Schramm, A. (2007). Ammonia-oxidizing Bacteria and Archaea in the Rhizosphere of Freshwater Macrophytes. In Biospektrum. Proceedings of the VAAM Annual Meeting (Vol. Special Issue, pp. 60). Pergamon Press.
Nielsen, J. L., Schramm, A., Bernhard, A. E., van den Engh, G. J. & Stahl, D. A. (2004). Flow Cytometry-Assisted Cloning of Specific Sequence Motifs from Complex 16S rRNA Gene Libraries. Applied and Environmental Microbiology, 70(12), 7550–7554. https://doi.org/10.1128/AEM.70.12.7550-7554.2004
Arentoft, T., De Ridder, J., Grundahl, F., Glowienka, L., Waelkens, C., Dupret, M.-A., Grigahcne, A., Lefever, K., Jensen, H. R., Reyniers, M., Frandsen, S. & Kjeldsen, H. (2007). Oscillating blue stragglers, γ Doradus stars and eclipsing binaries in the open cluster NGC 2506. Astronomy & Astrophysics (A&A), 465, 965-979.
Duelund, L., Hazell, A. C. & Toftlund, H. (2007). (1,1,1-Tris{[N-(2-pyridylmethyl)-N-methylamino]-methyl}ethane-κ6N)manganese(II) bis(perchlorate). Acta Crystallographica Section E: Structure Reports Online, 63, 1177-1178.
Nielsen, K. H. (2006). Naturvidenskabernes kanonisering: Forskere, erkendelser eller kulturarv. Nordisk Museologi/The Journal Nordic Museology , (2), 27-44.

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Lund-Hansen, L. C., Christiansen, C., Laima, M. & Laima, M. J. C. (2001). A new video controlled, hydraulically damped corer for sediment/water interactions studies. Marine Geo-Resources and Technology, 19, 45-51.
Brix, H. & Cizková, H. (2001). Aquatic Botany, special edition. Aquatic Botany, 69.
Brix, H., Arias, C. A. & Johansen, N. H. (2001). A two-stage vertical flow constructed wetland system for removal of nitrogen and phosphorus in domestic sewage - system design and initial experience: Abstract. Paper presented at International workshop on the use of wetlands in water pollution control, Trebon 26 - 30 September.
Pedersen, A.-GU., Thomsen, T. R. & Lomstein, B. A. (2001). Bacterial influence on amino acid enantiomerization in a coastal marine sediment. Limnology and Oceanography, 46(6), 1358-1369.
Brix, H. & Johansen, N.-H. (2001). Beplantede filteranlæg til rensning af spildevand i det åbne land. In Økologisk byfornyelse og spildevandsrensning (20 ed., pp. 7-85). Miljøstyrelsen.
Schulz, HN. & Jørgensen, BB. (2001). Big bacteria. Annual Review of Microbiology, 55, 105-137.
Jørgensen, BB. (2001). Biogeochemistry - Space for hydrogen. Nature, 412(6844), 286-+.
Lægaard, S. (2001). Biogeography of Ecuadorian grasses. Arnaldoa, 6(2), 185-196.
Aude, E., Christensen, M., Jensen, H. E., Lægaard, S. & Poulsen, R. S. (2001). Bladmosser i Høstemark Skov. In Høstemark: Status 2001 (pp. 86-102)
Larsen, K. (2001). Botanical collections in the Malesian region - What has been found, where is it and where to collect in the future. In Proceedings of the international conference on in-situ and ex-situ conservation in the new millennium, Kota Kinabalu, Sabah, Malaysia
Hilligsøe, K. M. (2001). Bright Atomic Solitons in Bose-Einstein Condensates: M.Sc. thesis. Institut for Fysik og Astronomi, Aarhus Universitet.
Gieseke, A., Purkhold, U., Wagner, M., Amann, R. & Schramm, A. (2001). Community Structure and Activity Dynamics of Nitrifying Bacteria in a Phosphate-Removing Biofilm. Applied and Environmental Microbiology, 67(3), 1351-1362. https://doi.org/10.1128/AEM.67.3.1351-1362.2001
Bruchert, V., Knoblauch, C. & Jørgensen, BB. (2001). Controls on stable sulfur isotope fractionation during bacterial sulfate reduction in Arctic sediments. Geochimica et Cosmochimica Acta, 65(5), 763-776.
Lund-Hansen, L. C., Vang, T. & Larsen, J. (2001). Dannelse af subsurface bloom af Pseudonitschia pseudodelicatissima i en intrusion. Poster session presented at 12th Danske Havforskermøde, Aarhus, Denmark.
Ottosen, L. (2001). Denitrification in exposed intertidal sediments. Marine Ecology Progress Series, 35-42.
Lund-Hansen, L. C., Vang, T. & Larsen, J. (2001). Development of a subsurface chlorophyll maximum (SCM) in a coastal intrusion related to small-scale upwelling. Poster session presented at Joint IAPSO/IABO Assembly, Mar del Plata, Argentina.
Joulian, C., Rytter, C., Kjeldsen, K., Ramsing, N. B. & Ingvorsen, K. (2001). Diversity and abundance of sulfate-reducing bacteria in activated sludge. In Abstracts. 9th International Symposium on Microbial Ecology (ISME-9). Interactions in the microbial world (pp. 390)
Laima, M. J. C., Mathiesen, H., Christiansen, C. & Lund-Hansen, L. C. (2001). Dynamics of P, Fe and Mn along a depth gradient in the SW Baltic Sea. Boreal Environment Research, 6, 317-333.
Ingvorsen, K. & Brandt, K. K. (2001). Ecology of sulfate reduction in hypersaline environments - a hostile environment for sulfate-reducing bacteria. In Abstracts. Halophiles 2001. International Conference on Halophilic Microorganisms (pp. s12)
Hylleberg, J. (2001). Editorial. Phuket Marine Biological Center. Special Publications, 25(1), iii.
Lessmann, J. A., Brix, H., Bauer, V., Clevering, O. A. & Comín, F. A. (2001). Effect of climatic gradients on the photosynthetic responses of four Phragmites australis populations. Aquatic Botany, 69, 109-126. http://www.elsevier.com/locate/aquabot
Larsen, K. & Larsen, S. S. (2001). Bauhinia strychnoidea Prain (Leguminosae-Caesalpinioideae), a new record from Thailand. Thai Forest Bulletin (BOT.), 28, 33-37.
Larsen, K. & Triboun, P. (2001). Hemiorchis rhodorrhachis K. Schum. (Zingiberaceae), a new record for Thailand. Thai Forest Bulletin (BOT.), 28, 39-43.
Jenjittikul, T. & Larsen, K. (2001). Kaempferia candida Wall. (Zingiberaceae), a new record for Thailand. Thai Forest Bulletin (BOT.), 28, 45-49.
Larsen, K. & Jenjittikul, T. (2001). Laosanthus, a new genus of Zingiberaceae from Laos. Nordic Journal of Botany, 21(2), 135-138.
Malte, H. (2001). Exchange of heat and gases in the Rete mirabile of warm-bodied fishes: Abstract. Paper presented at Danish Centre for Respiratory Adaptation (CRA).  International Minisymposium, University of Aarhus, 1 - 2 March.
Anbar, A. D., Zahnle, K. J., Arnold, G. L. & Mojzsis, S. J. (2001). Extraterrestrial iridium, sediment accumulation and the habitability of the early Earth's surface. Journal of Geophysical Research: Planets, 106(E2). https://doi.org/10.1029/2000JE001272
Wieland, A., de Beer, D., Damgaard, LR., Kuhl, M., van Dusschote, D. & Van As, H. (2001). Fine-scale measurement of diffusivity in a microbial mat with nuclear magnetic resonance imaging. Limnology and Oceanography, 46(2), 248-259. https://doi.org/10.4319/lo.2001.46.2.0248
Barfod, A. & Uhl, N. W. (2001). Floral Development in Aphandra (Arecaceae). American Journal of Botany, 88(2), 185-195.
Madsen, J., Balslev, H. & Mix, R. (2001). Flora of Isla Puná: Plant resources on a Neotropical Island. Aarhus Universitetsforlag.
Hylleberg, J. (2001). Foreword to Proceedings of Second National Workshop on Marine Molluscs in Nha Trang. In Proceedings of Second National Workshop on Marine Molluscs: Nha Trang (pp. 1). Ministry of Fisheries, Hanoi, Vietnam.
Hylleberg, J. (2001). General conclusions regarding the 11th TMMP congress and Workshop. Phuket Marine Biological Center Special Publication, 25(1), 1-10.
Mouritsen, K. N. (2001). Hitch-hiking parasite: a dark horse may be the real rider. International Journal for Parasitology, 31, 1417-1420.
Ingvorsen, K., Wainø, M. & Wejse, P. L. (2001). Hydrolysis of polysaccharides by aerobic halophilic bacteria. In Abstracts. 9th International Symposium on Microbial Ecology (ISME-9). Interactions in the microbial world (pp. 154)