Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Hoque, M. N. & Elmqvist, N. (2024). Dataopsy: Scalable and Fluid Visual Exploration using Aggregate Query Sculpting. IEEE Transactions on Visualization and Computer Graphics, 30(1), 186-196. https://doi.org/10.1109/TVCG.2023.3326594

Batch, A., Butcher, P. W. S., Ritsos, P. D. & Elmqvist, N. (2024). Wizualization: A 'Hard Magic' Visualization System for Immersive and Ubiquitous Analytics. IEEE Transactions on Visualization and Computer Graphics, 30(1), 507-517. https://doi.org/10.1109/TVCG.2023.3326580

Maliuk, A., Marghoub, A., Williams, C. J. A., Stanley, E., Kéver, L., Vickaryous, M., Herrel, A., Evans, S. E. & Moazen, M. (2024). Comparative analysis of osteoderms across the lizard body. Anatomical record (Hoboken, N.J. : 2007), 307(10), 3191-3203. https://doi.org/10.1002/ar.25418

Nguyen, M. T. A., Andersen, E. S. & Pothoulakis, G. (2025). Construction of Small Genes with Repetitive Elements Using Oligo Extension and Golden Gate Assembly. In D. Schindler (Ed.), Golden Gate Cloning (pp. 219-227). Humana Press. https://doi.org/10.1007/978-1-0716-4220-7_12

Joyce, W., He, K., Zhang, M., Ogunsola, S., Wu, X., Joseph, K. T., Bogomolny, D., Yu, W., Springer, M. S., Xie, J., Signore, A. V. & Campbell, K. L. (2024). Genetic excision of the regulatory cardiac troponin I extension in high-heart rate mammal clades. Science (New York, N.Y.), 385(6716), 1466-1471. https://doi.org/10.1126/science.adi8146

Steininger, F., Palmfeldt, J., Koren, K. & Kalinichev, A. V. (2024). Exploiting the pH-Cross Sensitivity of Ion-Selective Optodes to Broaden Their Response Range. ACS Sensors, 9(9), 4555-4559. https://doi.org/10.1021/acssensors.4c01481

Schwendt, G., Kalinichev, A. V., Borisov, S. M. & Koren, K. (2024). Simultaneous Imaging of Temperature and Oxygen by Utilizing Thermally Activated Delayed Fluorescence and Phosphorescence of a Single Indicator. ACS Measurement Science Au, 4(5), 568-576. https://doi.org/10.1021/acsmeasuresciau.4c00040

Serpell, L. C., Otzen, D. & Radford, S. E. (2024). Expanding the Protein Universe. Journal of Molecular Biology, 436(21), 168812. Article 168812. https://doi.org/10.1016/j.jmb.2024.168812

Wang, C., Liu, L., Yin, M., Eller, F., Brix, H., Wang, T., Salojärvi, J. & Guo, W. (2024). Genome-wide analysis tracks the emergence of intraspecific polyploids in Phragmites australis. npj biodiversity, 3(1), Article 29. https://doi.org/10.1038/s44185-024-00060-8

Crossley, J. L., Elsey, R., Crossley, D. A., Wang, T. & Hicks, J. W. (2024). There is no limitation for CO2 excretion across the lung in exercising American alligators (Alligator mississippiensis). The Journal of experimental biology, 227(18), Article jeb248139. https://doi.org/10.1242/jeb.248139

Castanheira, E. J., Maia, J. R., Monteiro, L. P. G., Sobreiro-Almeida, R., Wittig, N. K., Birkedal, H., Rodrigues, J. M. M. & Mano, J. F. (2024). 3D-printed injectable nanocomposite cryogel scaffolds for bone tissue regeneration. Materials Today Nano, 28, Article 100519. https://doi.org/10.1016/j.mtnano.2024.100519

Wightman, T., Muszyński, A., Kelly, S. J., Sullivan, J. T., Smart, C. J., Stougaard, J., Ferguson, S., Azadi, P. & Ronson, C. W. (2024). Rhizobial Secretion of Truncated Exopolysaccharides Severely Impairs the Mesorhizobium-Lotus Symbiosis. Molecular plant-microbe interactions : MPMI, 37(9), 662-675. https://doi.org/10.1094/MPMI-03-24-0024-R

Chakraborty, M., Gnanakumar, A., Sridharan, M. & Møller, A. (2024). Indirection-Bounded Call Graph Analysis. In J. Aldrich & G. Salvaneschi (Eds.), 38th European Conference on Object-Oriented Programming, ECOOP 2024 Article 3 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ECOOP.2024.10

Chiaramonti, D., Lehmann, J., Berruti, F., Giudicianni, P., Sanei, H. & Masek, O. (2024). Biochar is a long-lived form of carbon removal, making evidence-based CDR projects possible. Biochar, 6(1), Article 81. https://doi.org/10.1007/s42773-024-00366-7

Kim, S. W., Lee, H., Song, D. Y., Lee, G. H., Ji, J., Park, J. W., Han, J. H., Lee, J. W., Byun, H. J., Son, J. H., Kim, Y. R., Lee, Y., Kim, J., Jung, A., Lee, J., Kim, E., Kim, S. H., Lee, J. H., Satterstrom, F. K. ... An, J. Y. (2024). Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism. Genome Medicine, 16(1), 114. Article 114. https://doi.org/10.1186/s13073-024-01385-6

Villalva, P. (2024). Commentary to: An integrated historical study on human–tiger interactions in China. Integrative Conservation, 3(3), 149-151. https://doi.org/10.1002/inc3.63

Palviainen, M., Puutio, J., Østergaard, R. H., Eble, J. A., Maaninka, K., Butt, U., Ndika, J., Kari, O. K., Kamali-Moghaddam, M., Kjaer-Sorensen, K., Oxvig, C., Aransay, A. M., Falcon-Perez, J. M., Federico, A., Greco, D., Laitinen, S., Hayashi, Y. & Siljander, P. R. M. (2024). Beyond basic characterization and omics: Immunomodulatory roles of platelet-derived extracellular vesicles unveiled by functional testing. Journal of Extracellular Vesicles, 13(10), Article e12513. https://doi.org/10.1002/jev2.12513

Bose, B., Carrilho, P., Marinucci, M., Moretti, C., Pietroni, M., Carella, E., Piga, L., Wright, B. S., Vernizzi, F., Carbone, C., Casas, S., D'Amico, G., Frusciante, N., Koyama, K., Pace, F., Pourtsidou, A., Baldi, M., De La Bella, L. F., Fiorini, B. ... Vergani, D. (2024). Euclid preparation: XLIV. Modelling spectroscopic clustering on mildly nonlinear scales in beyond-ΛCDM models. Astronomy and Astrophysics, 689, Article A275. https://doi.org/10.1051/0004-6361/202348784

Sonne, C., Jenssen, B. M., Ciesielski, T. M., Vorkamp, K. & Dietz, R. (2024). Time to reboot circumarctic One Health collaboration. The Lancet, 404(10460), 1304. https://doi.org/10.1016/S0140-6736(24)01611-8

Roohi, M., Mirzajani, S., Haghighi, A. R. & Basse-O’Connor, A. (2024). Robust Design of Two-Level Non-Integer SMC Based on Deep Soft Actor-Critic for Synchronization of Chaotic Fractional Order Memristive Neural Networks. Fractal and Fractional, 8(9), Article 548. https://doi.org/10.3390/fractalfract8090548

Rasmussen, T. L., El Bani Altuna, N. & Thomsen, E. (2024). Variations in deep-sea methane seepage linked to millennial-scale changes in bottom water temperatures ~ 50-6 ka, NW Svalbard margin. Scientific Reports, 14(1), 22184. Article 22184. https://doi.org/10.1038/s41598-024-72865-3

Årdal, M. A., Adj, G., Alblooshi, A., Aranha, D. F., A. Canales-Martínez, I., Chavez-Saab, J., Gazzoni Filho, D. L., Reijnders, K. & Rodriguez-Henriquez, F. (2025). Optimized One-Dimensional SQIsign Verification on Intel and Cortex-M4. IACR Transactions of Cryptographic Hardware and Embedded Systems, 2025(1), 497-522. https://doi.org/10.46586/tches.v2025.i1.497-522

Galata, S., Walkington, I., Lane, T. P., Kiriakoulakis, K. & Dick, J. (2024). Rapid detection of microfibres in environmental samples using open-source visual recognition models. Journal of Hazardous Materials, 480, Article 135956. https://doi.org/10.1016/j.jhazmat.2024.135956

Babizhetskyy, V., Myakush, O., Kotur, B., Zheng, C., Smetana, V. & Mudring, A. V. (2024). Ternary gallide Zr₇Pd_7–xGa_3+x (0 ≤ x ≤ 1.8): Synthesis, crystal and electronic structures. Journal of Solid State Chemistry, 340, Article 125034. https://doi.org/10.1016/j.jssc.2024.125034

Sokołowska, N. & ISOLDE Collaboration (2024). Decay study of Be 11 with an optical time-projection chamber. Physical Review C, 110(3), Article 034328. https://doi.org/10.1103/PhysRevC.110.034328

Mezzomo, P., Leong, J. V., Vodrážka, P., Moos, M., Jorge, L. R., Volfová, T., Michálek, J., de L. Ferreira, P., Kozel, P., Sedio, B. E. & Volf, M. (2024). Variation in induced responses in volatile and non-volatile metabolites among six willow species: Do willow species share responses to herbivory? Phytochemistry, 226, Article 114222. https://doi.org/10.1016/j.phytochem.2024.114222

Stubkjær, R. B., Thorup, P. S., Jo̷rgensen, L. R., Roelsgaard, M., Fischer, K. F. F., Dippel, A. C. & Iversen, B. B. (2024). In Operando X-ray Diffraction Study of Thermoelectric Cu₂Se. Chemistry of Materials, 36(18), 8782-8791. https://doi.org/10.1021/acs.chemmater.4c01487

Wray, K. B. (2024). A hobbit’s guide to technology ethics: A review of S. Umbrello's Technology Ethics. Metascience, 33(3), 467-469. https://doi.org/10.1007/s11016-024-01011-6

Abrego, N., Furneaux, B., Hardwick, B., Somervuo, P., Palorinne, I., Aguilar-Trigueros, C. A., Andrew, N. R., Babiy, U. V., Bao, T., Bazzano, G., Bondarchuk, S. N., Bonebrake, T. C., Brennan, G. L., Bret-Harte, S., Bässler, C., Cagnolo, L., Cameron, E. K., Chapurlat, E., Creer, S. ... Ovaskainen, O. (2024). Airborne DNA reveals predictable spatial and seasonal dynamics of fungi. Nature, 631(8022), 835-842. https://doi.org/10.1038/s41586-024-07658-9

Damsgård, J. F., Hansen, T. M., Voss, P. H., Hansen, H., Steffansen, S., Nørmark, E. & Fyhn, M. (2024). Subsurface characterization using Distributed Acoustic Sensing (DAS) on an offshore fiber between Denmark and Norway. Poster session presented at EGU General Assembly 2024, Vienna, Austria. https://doi.org/10.5194/egusphere-egu24-414

Jiang, Y., Kleinau, J., Eckroth, T. M., Hoggan, E., Mueller, S. & Wessely, M. (2024). MouthIO: Fabricating Customizable Oral User Interfaces with Integrated Sensing and Actuation. In UIST '24 - The 37th Annual ACM Symposium on User Interface Software and Technology Article 1 Association for Computing Machinery. https://doi.org/10.1145/3654777.3676443

Luize, B. G., Tuomisto, H., Ekelschot, R., Dexter, K. G., Amaral, I. L. D., Coelho, L. D. S., Matos, F. D. D. A., Lima Filho, D. D. A., Salomão, R. P., Wittmann, F., Castilho, C. V., Carim, M. D. J. V., Guevara, J. E., Phillips, O. L., Magnusson, W. E., Sabatier, D., Cardenas Revilla, J. D., Molino, J. F., Irume, M. V. ... Ter Steege, H. (2024). The biogeography of the Amazonian tree flora. Communications Biology, 7(1), Article 1240. https://doi.org/10.1038/s42003-024-06937-5

Greisen, S. R., Bendix, M., Nielsen, M. A., Pedersen, K., Jensen, N. H., Hvid, M., Mikkelsen, J. H., Drace, T., Boesen, T., Steiniche, T., Schmidt, H. & Deleuran, B. (2024). Gal-3 blocks the binding between PD-1 and pembrolizumab. Journal for Immunotherapy of Cancer, 12(10), Article e009952. https://doi.org/10.1136/jitc-2024-009952

Galloway, J. M., Parsons, M. B., Ardakani, O. H., Falck, H., Fewster, R. E., Swindles, G. T., Sanei, H., Palmer, M. J., Nasser, N. A. & Patterson, R. T. (2024). Organic matter is a predominant control on total mercury concentration of near-surface lake sediments across a boreal to low Arctic tundra transect in northern Canada. Science of the Total Environment, 954, Article 176466. https://doi.org/10.1016/j.scitotenv.2024.176466

Liu, L., Ji, Y., Bianchi, M., Hus, S. M., Li, Z., Balog, R., Miwa, J. A., Hofmann, P., Li, A. P., Zemlyanov, D. Y., Li, Y. & Chen, Y. P. (2024). A metastable pentagonal 2D material synthesized by symmetry-driven epitaxy. Nature Materials, 23(10), 1339-1346. https://doi.org/10.1038/s41563-024-01987-w

Brodal, G. S., Fagerberg, R. & Rysgaard, C. M. (2024). On Finding Longest Palindromic Subsequences Using Longest Common Subsequences. In T. Chan, J. Fischer, J. Iacono & G. Herman (Eds.), 32nd Annual European Symposium on Algorithms, ESA 2024 Article 35 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ESA.2024.35

Kruse, T., Garvanska, D. H., Varga, J. K., Garland, W., McEwan, B. C., Hein, J. B., Weisser, M. B., Benavides-Puy, I., Chan, C. B., Sotelo-Parrilla, P., Mendez, B. L., Jeyaprakash, A. A., Schueler-Furman, O., Jensen, T. H., Kettenbach, A. N. & Nilsson, J. (2024). Substrate recognition principles for the PP2A-B55 protein phosphatase. Science Advances, 10(40), eadp5491. Article eadp5491. https://doi.org/10.1126/sciadv.adp5491

Djavani-Tabrizi, I., Lindkvist, T. T., Langeland, J., Kjær, C., Graham, M., Kjaergaard, H. G. & Nielsen, S. B. (2024). Tautomer-Selective Fluorescence Spectroscopy of Oxyluciferin Anions. Journal of the American Chemical Society, 146(39), 26975-26982. https://doi.org/10.1021/jacs.4c08596

Fournais, S., Girardot, T., Junge, L., Morin, L. & Olivieri, M. (2024). Lower bounds on the energy of the Bose gas. Reviews in Mathematical Physics, 36(9), Article 2360004. https://doi.org/10.1142/S0129055X23600048

Gabel, J., Schmidt, S., Pfeuffer, K. & Steinicke, F. (2024). Guiding Handrays in Virtual Reality: Comparison of Gaze- and Object-Based Assistive Raycast Redirection. In S. N. Spencer (Ed.), Proceedings - SUI 2024: ACM Symposium on Spatial User Interaction Article 27 Association for Computing Machinery. https://doi.org/10.1145/3677386.3682080

Fleischhacker, N., Larsen, K. G., Obremski, M. & Simkin, M. (2024). Invertible Bloom Lookup Tables with Less Memory and Randomness. In T. Chan, J. Fischer, J. Iacono & G. Herman (Eds.), 32nd Annual European Symposium on Algorithms, ESA 2024 Article 54 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ESA.2024.54

Okholm, T. L. H., Kamstrup, A. B., Nielsen, M. M., Hollensen, A. K., Graversgaard, M. L., Sørensen, M. H., Kristensen, L. S., Vang, S., Park, S. S., Yeo, E., Dyrskjøt, L., Kjems, J., Pedersen, J. S. & Damgaard, C. K. (2024). circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. eLife, 13, Article RP91783. https://doi.org/10.7554/eLife.91783

Cino, D., Brandsen, S., Bressa, N., Eriksson, E., Mascheroni, G. & Zaman, B. (2022, Jul 1). Young People's Digital Skills Practices in Non- formal Learning Contexts: observations, interviews, co-design. Zenodo. https://doi.org/10.5281/zenodo.6832846

Niu, S., Lu, Z., Zhang, A. X., Cai, J., Griggio, C. F. & Heuer, H. (2023). Building Credibility, Trust, and Safety on Video-Sharing Platforms. In A. Schmidt, K. Väänänen, T. Goyal, P. O. Kristensson & A. Peters (Eds.), Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems, CHI EA 2023, Hamburg, Germany, April 23-28, 2023 (pp. 337:1-337:7). Article 337 ACM. https://doi.org/10.1145/3544549.3573809

Boudgoust, K. & Takahashi, A. (2024). Sequential Half-Aggregation of Lattice-Based Signatures. In G. Tsudik, M. Conti, K. Liang & G. Smaragdakis (Eds.), Computer Security – ESORICS 2023: 28th European Symposium on Research in Computer Security, The Hague, The Netherlands, September 25–29, 2023, Proceedings, Part I (Vol. 1, pp. 270-289). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-50594-2_14

Badrinarayanan, S., Miao, P., Mukherjee, P. & Ravi, D. (2023). On the Round Complexity of Fully Secure Solitary MPC with Honest Majority. In G. N. Rothblum & H. Wee (Eds.), Theory of Cryptography - 21st International Conference, TCC 2023, Taipei, Taiwan, November 29 - December 2, 2023, Proceedings, Part II (Vol. 14370, pp. 124-155). Springer, Cham. https://doi.org/10.1007/978-3-031-48618-0_5

Soureshjani, F. H., Hall-Andersen, M., Jahanara, M., Kam, J., Gorzny, J. & Ahmadvand, M. (2023). Automated Analysis of Halo2 Circuits. In S. Graham-Lengrand & M. Preiner (Eds.), Proceedings of the 21st International Workshop on Satisfiability Modulo Theories (SMT 2023) co-located with the 29th International Conference on Automated Deduction (CADE 2023), Rome, Italy, July, 5-6, 2023 (Vol. 3429, pp. 3-17). CEUR-WS.org. https://ceur-ws.org/Vol-3429/paper3.pdf

Doerner, J., Kondi, Y., Lee, E., Shelat, A. & Tyner, L. (2023). Threshold BBS+ Signatures for Distributed Anonymous Credential Issuance. In 44th IEEE Symposium on Security and Privacy, SP 2023, San Francisco, CA, USA, May 21-25, 2023 (pp. 773-789). IEEE. https://doi.org/10.1109/SP46215.2023.10179470

Sterling, J. (2023). What should a generic object be? Mathematical Structures in Computer Science, 33(1), 46-67. https://doi.org/10.1017/S0960129523000117

Tommasel, A. & Assent, I. (2023). Recommendation fairness and where to find it: An empirical study on fairness of user recommender systems. In J. He, T. Palpanas, X. Hu, A. Cuzzocrea, D. Dou, D. Slezak, W. Wang, A. Gruca, J. C.-W. Lin & R. Agrawal (Eds.), IEEE International Conference on Big Data, BigData 2023, Sorrento, Italy, December 15-18, 2023 (pp. 4195-4204). IEEE. https://doi.org/10.1109/BIGDATA59044.2023.10386616

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