Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Seisenberger, M., ter Beek, M. H., Fan, X., Ferrari, A., Haxthausen, A. E., James, P., Lawrence, A., Luttik, B., van de Pol, J. & Wimmer, S. (2022). Safe and Secure Future AI-Driven Railway Technologies: Challenges for Formal Methods in Railway. In T. Margaria & B. Steffen (Eds.), Leveraging Applications of Formal Methods, Verification and Validation. Practice - 11th International Symposium, ISoLA 2022, Proceedings (pp. 246-268). Springer. https://doi.org/10.1007/978-3-031-19762-8_20

van de Pol, J. (2022). Exploring a Parallel SCC Algorithm: Using TLA ⁺ and the TLC Model Checker. In T. Margaria & B. Steffen (Eds.), Leveraging Applications of Formal Methods, Verification and Validation. Verification Principles - 11th International Symposium, ISoLA 2022, Proceedings (pp. 535-555). Springer. https://doi.org/10.1007/978-3-031-19849-6_30

André, É., Marinho, D., Petrucci, L. & van de Pol, J. (2022). Efficient Convex Zone Merging in Parametric Timed Automata. In S. Bogomolov & D. Parker (Eds.), Formal Modeling and Analysis of Timed Systems. FORMATS 2022 (pp. 200-218). Springer. https://doi.org/10.1007/978-3-031-15839-1_12

van de Pol, J. & Petrucci, L. (2021). On Completeness of Liveness Synthesis for Parametric Timed Automata (Extended Abstract). In M. Roggenbach (Ed.), Recent Trends in Algebraic Development Techniques - 25th International Workshop, WADT 2020, Revised Selected Papers (pp. 3-10). Springer Science+Business Media. https://doi.org/10.1007/978-3-030-73785-6_1

Pauli, A. B., Derczynski, L. & Assent, I. (2022). Modelling Persuasion through Misuse of Rhetorical Appeals. In NLP4PI 2022 - 2nd Workshop on NLP for Positive Impact, Proceedings of the Workshop (pp. 89-100). Association for Computational Linguistics. https://doi.org/10.18653/v1/2022.nlp4pi-1.11

Christiansen, V. R., Kiilerich, A. H. & Mølmer, K. (2023). Interactions of quantum systems with pulses of quantized radiation: From a cascaded master equation to a traveling mode perspective. Physical Review A, 107(1), Article 013706. https://doi.org/10.1103/PhysRevA.107.013706

Zhang, Y., Mu, W., Zhang, Y., He, X., Wang, Y., Ma, H., Zhu, T., Li, A., Hou, Q., Yang, W., Ding, Y., Ramakrishna, S. & Li, H. (2022). Recent Advances in Cardiac Patches: Materials, Preparations, and Properties. ACS Biomaterials Science and Engineering, 8(9), 3659-3675. https://doi.org/10.1021/acsbiomaterials.2c00348

Schwiegelshohn, C. & Sheikh-Omar, O. A. (2022). An Empirical Evaluation of k-Means Coresets. In S. Chechik, G. Navarro, E. Rotenberg & G. Herman (Eds.), 30th Annual European Symposium on Algorithms, ESA 2022 (pp. 84:1-84:17). Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.ESA.2022.84

Theocharidis, K., Terrovitis, M., Skiadopoulos, S. & Karras, P. (2022). A Content Recommendation Policy for Gaining Subscribers. In SIGIR 2022 - Proceedings of the 45th International ACM SIGIR Conference on Research and Development in Information Retrieval (pp. 2501-2506). Association for Computing Machinery. https://doi.org/10.1145/3477495.3531885

Ganesh, C., Khoshakhlagh, H., Kohlweiss, M., Nitulescu, A. & Zając, M. (2022). What Makes Fiat–Shamir zkSNARKs (Updatable SRS) Simulation Extractable? In C. Galdi & S. Jarecki (Eds.), Security and Cryptography for Networks (pp. 735-760). Springer. https://doi.org/10.1007/978-3-031-14791-3_32

Jørgensen, B. B. (2021). Sulfur Biogeochemical Cycle of Marine Sediments. Geochemical Perspectives, 10(2), 145-307. https://doi.org/10.7185/geochempersp.10.2

Ganesh, C., Khoshakhlagh, H. & Parisella, R. (2022). NIWI and New Notions of Extraction for Algebraic Languages. In C. Galdi & S. Jarecki (Eds.), Security and Cryptography for Networks. SCN 2022 (pp. 687-710). Springer. https://doi.org/10.1007/978-3-031-14791-3_30

Julku, A., Kinnunen, J. J., Camacho-Guardian, A. & Bruun, G. M. (2022). Light-induced topological superconductivity in transition metal dichalcogenide monolayers. Physical Review B, 106(13), Article 134510. https://doi.org/10.1103/PhysRevB.106.134510

Rasmussen, T. (2023). authAR - Automatic Authoring of Picking and Layout Optimization. In Proceedings of the 34th Australian Conference on Human-Computer Interaction (pp. 199 - 205). Association for Computing Machinery. https://doi.org/10.1145/3572921.357294

Gariazzo, S., Gerbino, M., Brinckmann, T., Lattanzi, M., Mena, O., Schwetz, T., Choudhury, S. R., Freese, K., Hannestad, S., Ternes, C. A. & Tórtola, M. (2022). Neutrino mass and mass ordering: no conclusive evidence for normal ordering. Journal of Cosmology and Astroparticle Physics, 2022(10), Article 010. https://doi.org/10.1088/1475-7516/2022/10/010

Alonso, I., Alpigiani, C., Altschul, B., Araújo, H., Arduini, G., Arlt, J., Badurina, L., Balaž, A., Bandarupally, S., Barish, B. C., Barone, M., Barsanti, M., Bass, S., Bassi, A., Battelier, B., Baynham, C. F. A., Beaufils, Q., Belić, A., Bergé, J. ... Zupanič, E. (2022). Cold atoms in space: community workshop summary and proposed road-map. EPJ Quantum Technology, 9, Article 30. https://doi.org/10.1140/epjqt/s40507-022-00147-w

Nyhegn, J. H., Nielsen, K. K. & Bruun, G. M. (2022). Equilibrium and nonequilibrium dynamics of a hole in a bilayer antiferromagnet. Physical Review B, 106(15), Article 155160. https://doi.org/10.1103/PhysRevB.106.155160

Rocchini, D., Santos, M. J., Ustin, S. L., Féret, J. B., Asner, G. P., Beierkuhnlein, C., Dalponte, M., Feilhauer, H., Foody, G. M., Geller, G. N., Gillespie, T. W., He, K. S., Kleijn, D., Leitão, P. J., Malavasi, M., Moudrý, V., Müllerová, J., Nagendra, H., Normand, S. ... Lenoir, J. (2022). The Spectral Species Concept in Living Color. Journal of Geophysical Research: Biogeosciences, 127(9), Article e2022JG007026. https://doi.org/10.1029/2022JG007026

Jiang, C., Cunha, M., Christensen-Dalsgaard, J., Zhang, Q. S. & Gizon, L. (2022). Evolution of dipolar mixed-mode coupling factor in red giant stars: impact of buoyancy spike. Monthly Notices of the Royal Astronomical Society, 515(3), 3853-3866. https://doi.org/10.1093/mnras/stac2065

Calderó-Pascual, M., Yıldız, D., Yalçın, G., Metin, M., Yetim, S., Fiorentin, C., Andersen, M. R., Jennings, E., Jeppesen, E., Ger, K. A., Beklioğlu, M. & McCarthy, V. (2022). The importance of allochthonous organic matter quality when investigating pulse disturbance events in freshwater lakes: a mesocosm experiment. Hydrobiologia, 849(17-18), 3905-3929. https://doi.org/10.1007/s10750-021-04757-w

Jantawongsri, K., Nørregaard, R. D., Bach, L., Dietz, R., Sonne, C., Jørgensen, K., Lierhagen, S., Ciesielski, T. M., Jenssen, B. M., Waugh, C. A., Eriksen, R., Nowak, B. & Anderson, K. (2022). Effects of exposure to environmentally relevant concentrations of lead (Pb) on expression of stress and immune-related genes, and microRNAs in shorthorn sculpins (Myoxocephalus scorpius). Ecotoxicology, 31(7), 1068-1077. https://doi.org/10.1007/s10646-022-02575-x

Guillemet, M., Chabas, H., Nicot, A., Gatchich, F., Ortega-Abboud, E., Buus, C., Hindhede, L., Rousseau, G. M., Bataillon, T., Moineau, S. & Gandon, S. (2022). Competition and coevolution drive the evolution and the diversification of CRISPR immunity. Nature Ecology & Evolution, 6(10), 1480-1488. https://doi.org/10.1038/s41559-022-01841-9

Blaabjerg, J. F. & Askarov, A. (2023). OblivIO: Securing reactive programs by oblivious execution with bounded traffic overheads. Paper presented at 36th IEEE Computer Security Foundations Symposium, Dubrovnik, Croatia.

Kampouris, I. D., Gründger, G. F., Christensen, J. H., Greer, C. W., Kjeldsen, K. U., Boone, W., Meire, L., Rysgaard, S. & Vergeynst, L. (2023). Long-term patterns of hydrocarbon biodegradation and bacterial community composition in epipelagic and mesopelagic zones of an Arctic fjord. Journal of Hazardous Materials, 446, Article 130656. https://doi.org/10.1016/j.jhazmat.2022.130656

Lunding, M. S., Leiva, G., Grønbæk, J. E. & Petersen, M. G. (2022). ProjectAR: Rapid Prototyping of Projection Mapping with Mobile Augmented Reality. Poster session presented at Adjunct Proceedings of the 2022 Nordic Human-Computer Interaction Conference. https://doi.org/10.1145/3547522.3547679

Grønbæk, J. E. (2022). Designing eXtended reality experiences for the future of hybrid meetings. XRDS: Crossroads, 29(1), 20-25. https://xrds.acm.org/article.cfm?aid=3558190

Major, M., Daniilidis, A., Hansen, T. M., Khait, M. & Voskov, D. (2023). Influence of process-based, stochastic and deterministic methods for representing heterogeneity in fluvial geothermal systems. Geothermics, 109, Article 102651. https://doi.org/10.1016/j.geothermics.2023.102651

Heidari, A., Hansen, T. M., Amini, N., Amini, H., Madsen, R. B. & Niri, M. E. (2021). EXAMINING DIFFERENT NOISE SCENARIOS FOR THE PROBABILISTIC INVERSION OF SEISMIC DATA. In 82nd EAGE Conference and Exhibition 2021 (pp. 4328-4332). European Association of Geoscientists and Engineers, EAGE.

Heidari, A., Amini, N., Hansen, T. M., Amini, H. & Niri, M. E. (2021). DIRECT BAYESIAN SEISMIC INVERSION FOR POROSITY ESTIMATION IN A HARD ROCK CARBONATE RESERVOIR. In 82nd EAGE Conference and Exhibition 2021 (pp. 4398-4402). European Association of Geoscientists and Engineers, EAGE.

Hansen, T. M., Mosegaard, K., Holm, S., Andersen, F., Fischer, B. M. B. & Hansen, A. E. (2022). Probabilistic deconvolution of PET images using informed priors. Frontiers in Nuclear Medicine, 2, Article 1028928. https://doi.org/10.3389/fnume.2022.1028928

Dalagnol, L. V. S., Bettega, M. H. F., Jones, N. C., Hoffmann, S. V., Souza Barbosa, A. & Limao-Vieira, P. (2023). Electronic state spectroscopy of nitromethane and nitroethane. The Journal of Physical Chemistry A, 127(6), 1445-1457. https://doi.org/10.1021/acs.jpca.2c08023

Amagat, J., Müller, C. A., Jensen, B. N., Xiong, X., Su, Y., Christensen, N. P., Le Friec, A., Dong, M., Fang, Y. & Chen, M. (2023). Injectable 2D flexible hydrogel sheets for optoelectrical/biochemical dual stimulation of neurons. Biomaterials advances, 146, Article 213284. https://doi.org/10.1016/j.bioadv.2023.213284

Guerra, J. P. L., Blanchet, C. E., Vieira, B. J. C., Waerenborgh, J. C., Jones, N. C., Hoffmann, S. V., Pereira, A. S. & Tavares, P. (2023). Controlled modulation of the dynamics of the Deinococcus grandis Dps N‐terminal tails by divalent metals. Protein Science, 32(2), Article e4567. https://doi.org/10.1002/pro.4567

Sandgaard, A. D., Shemesh, N., Kiselev, V. G. & Jespersen, S. N. (2023). Larmor frequency shift from magnetized cylinders with arbitrary orientation distribution. NMR in Biomedicine, 36(3), Article e4859. https://doi.org/10.1002/nbm.4859

Baum, C., David, B. & Dowsley, R. (2022). (Public) Verifiability for Composable Protocols Without Adaptivity or Zero-Knowledge. In C. Ge & F. Guo (Eds.), Provable and Practical Security - 16th International Conference, ProvSec 2022, Proceedings (pp. 249-272). Springer. https://doi.org/10.1007/978-3-031-20917-8_17

Alstrup, A. K. O., Jensen, H. M. & Wang, T. (2023). Nøgenrotten – et forsøgsdyr med mange besynderlige egenskaber. Dyrlægen, 2023(1), 6-8.

Klassen, L., Rasmussen, U. L., Kveiborg, J., Richards, M. P., Orlando, L., Svenning, J.-C., Ritchie, K., Andreasen, M. H., Philippsen, B., Iversen, R. & Johannsen, N. N. (2023). Ginnerup revisited: New excavations at a key Neolithic site on Djursland, Denmark. Journal of Neolithic Archaeology, 25, 35–65. https://doi.org/10.12766/jna.2023.2

Roos, A. H., Hoque, Z., Klimešová, E., Ben Ltaief, L., Medina, C., Jurkovič, M., Albrecht, M., Finke, O., Hort, O., Nejdl, J., Mudrich, M., Andreasson, J. & Krikunova, M. (2023). Electron correlation dynamics in atomic Kr excited by XUV pulses and controlled by NIR laser pulses of variable intensity. New Journal of Physics, 25(1), Article 013038. https://doi.org/10.1088/1367-2630/acb567

Yesiltas, B., Soria Caindec, A. M., García Moreno, P. J., Echers, S. G., Olsen, T. H., Jones, N. C., Hoffmann, S. V., Marcatili, P., Overgaard, M. T., Hansen, E. B. & Jacobsen, C. (2023). Physical and oxidative stability of fish oil-in-water emulsions stabilized with emulsifier peptides derived from seaweed, methanotrophic bacteria and potato proteins. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 663, Article 131069. https://doi.org/10.1016/j.colsurfa.2023.131069

Demontis, D., Walters, G. B., Athanasiadis, G., Walters, R., Therrien, K., Nielsen, T. T., Farajzadeh, L., Voloudakis, G., Bendl, J., Zeng, B., Zhang, W., Grove, J., Als, T. D., Duan, J., Satterstrom, F. K., Bybjerg-Grauholm, J., Bækved-Hansen, M., Gudmundsson, O. O., Magnusson, S. H. ... ADHD Working Group of the Psychiatric Genomics Consortium (2023). Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains. Nature Genetics, 55(2), 198-208. https://doi.org/10.1038/s41588-022-01285-8

Carrer, M., Dibona, R., Prendin, A. L. & Brunetti, M. (2023). Recent waning snowpack in the Alps is unprecedented in the last six centuries. Nature Climate Change, 13(2), 155-160. https://doi.org/10.1038/s41558-022-01575-3

Nielsen, K. H. & Kragh, G. (2023). D4.2: Second version of the Description of TIME4CS training programs. Zenodo. https://doi.org/10.5281/zenodo.7560973

von Arx, G., Carrer, M., Crivellaro, A., De Micco, V., Fonti, P., Lens, F., Prendin, A. L., Rosner, S. & Sass-Klaassen, U. (2021). Q-NET – a new scholarly network on quantitative wood anatomy. Dendrochronologia, 70, Article 125890. https://doi.org/10.1016/j.dendro.2021.125890

De Borbon, M. & Spotti, C. (2021). Asymptotically conical Calabi-Yau metrics with cone singularities along a compact divisor. International Mathematics Research Notices, 2021(2), 1198-1223. https://doi.org/10.1093/imrn/rnz280

Spotti, C., Angella, D., Calamai, S. & Pediconi, F. (2022). A moment map for twisted-Hamiltonian vector fields on locally conformally Kähler manifolds. ArXiv. https://arxiv.org/abs/2207.06863

Jønsson, K. A., Thomassen, E. E., Iova, B., Sam, K. & Thomsen, P. F. (2023). Using environmental DNA to investigate avian interactions with flowering plants. Environmental DNA, 5(3), 462-475. https://doi.org/10.1002/edn3.393

Fedosov, S., Nexø, E. & Würtz Heegaard, C. (2023). Low methylcobalamin in liver tissues is an artifact as shown by a revised extraction procedure. Biochimica et Biophysica Acta (BBA) - General Subjects, 1867(4), Article 130315. https://doi.org/10.1016/j.bbagen.2023.130315

Zhang, J., Ishikawa, D., Koza, M. M., Nishibori, E., Song, L., Baron, A. Q. R. & Iversen, B. B. (2023). Dynamic Lone Pair Expression as Chemical Bonding Origin of Giant Phonon Anharmonicity in Thermoelectric InTe. Angewandte Chemie International Edition, 62(13), Article e202218458. https://doi.org/10.1002/anie.202218458

Støckler, L. J., Krause, L., Svane, B., Tolborg, K., Richter, B., Takahashi, S., Fujita, T., Kasai, H., Sugahara, M., Inoue, I., Nishibori, E. & Iversen, B. B. (2023). Towards pump-probe single-crystal XFEL refinements for small-unit-cell systems. IUCrJ, 10(Part 1), 103-117. https://doi.org/10.1107/S2052252522011782

Nielsen, K. H. (2023). Skygger for solen. Weekendavisen, Sektion 4 (Ideer)(3), 5-5. Article e95ab411.

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