Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Damgård, I. B., Nielsen, J. B., Fitzi, M. & Desmedt, Y. (2007). Secure Protocols with Asymmetric Trust. In Advances in Cryptology - ASIACRYPT 2007: 13th International Conference on the Theory and Application of Cryptology and Information Security, Kuching, Malaysia, December 2-6, 2007. Proceedings (pp. 357-375). Springer. https://doi.org/10.1007/978-3-540-76900-2_22

Damgård, I. B., Krøigaard, M. & Geisler, M. J. (2007). Efficient and Secure Comparison for On-Line Auctions. In J. Pieprzyk, H. Ghodosi & E. Dawson (Eds.), Information Security and Privacy: 12th Australasian Conference, ACISP 2007, Townsville, Australia, July 2-4, 2007. Proceedings (Vol. 4586, pp. 416-430). Springer. https://doi.org/10.1007/978-3-540-73458-1_30

Lombardo, F., Heckmann, A. B. L., Miwa, H., Perry, J. A., Yano, K., Hayashi, M., Parniske, M., Wang, T. L. & Downie, J. A. (2006). Identification of symbiotically defective mutants of Lotus japonicus affected in infection thread growth. Molecular plant-microbe interactions, 19(12), 1444-1450.

Heckmann, A. B. L., Lombardo, F., Miwa, H., Perry, J. A., Karas, B., Szczyglowski, K., Parniske, M., Wang, T. L. & Downie, J. A. (2008). Lotus japonicus nodulation requires two GRAS-domain regulators, NSP1 and NSP2. Poster session presented at Plant Biotech Denmark, Annual Meeting 2008, København, Denmark.

Schwartzbach, M. I. (2008). Design Choices in a Compiler Course or How to Make Undergraduates Love Formal Notation. In L. Hendren (Ed.), Compiler Construction: 17th International Conference, CC 2008, Held as Part of the Joint European Conferences on Theory and Practice of Software, ETAPS 2008, Budapest, Hungary, March 29 - April 6, 2008. Proceedings (pp. 1-15). Springer. https://doi.org/10.1007/978-3-540-78791-4_1

Christensen, B. G., Kristensen, M. D., Hansen, F. A. & Bouvin, N. O. (2008). Enabling Co-located Learning over Mobile Ad Hoc P2P with LightPeers. Journal of Networks, 3(2), 64-71. https://doi.org/10.4304/jnw.3.2.64-71

Kristensen, M. D. & Bouvin, N. O. (2008). Energy Efficient MANET Routing Using a Combination of Span and BECA/AFECA. Journal of Networks, 3(3), 49-56. https://doi.org/10.4304/jnw.3.3.49-56

Abou Salem, W. K., Faupin, J., Froehlich, J. & Sigal, I. M. (2008). On the Theory of Resonances in Non-Relativistic QED and Related Models. arxiv.org. http://arxiv.org/abs/0711.4708

Ungar, D. & Ernst, E. (2007). Point/Counterpoint. I E E E Software, 24(5), 72-75. https://doi.org/10.1109/MS.2007.142

Ernst, E. (Ed.) (2007). ECOOP 2007 - Object-Oriented Programming: 21st European Conference, Berlin, Germany, July 30 - August 3, 2007. Proceedings. Springer. Lecture Notes in Computer Science Vol. 4609

Arge, L., Bender, M. A., Demaine, E. D. & Munro, J. I. (2007). Cache-Oblivious Priority Queue and Graph Algorithm Applications. S I A M Journal on Computing, 36(6), 1672-1695. https://doi.org/10.1145/509907.509950

Arge, L. & Zeh, N. (2010). External-Memory Algorithms and Data Structures: General concepts and techniques. In M. J. Atallah & M. Blanton (Eds.), Algorithms and Theory of Computation Handbook (second edition) CRC Press.

Arge, L., Brodal, G. S. & Satti, S. R. (2008). External Memory Planar Point Location with Logarithmic Updates. In M. Teilaud (Ed.), Proceedings of the twenty-fourth annual symposium on Computational geometry (pp. 139-147). Association for Computing Machinery. https://doi.org/10.1145/1377676.1377699

Arge, L., Cachin, C., Jurdzinski, T. & Tarlecki, A. (Eds.) (2007). Proceedings of 34th International Colloquium on Automata, Language and Programming. ICALP'07. Springer.

Arge, L., Hoffmann, M. & Welzl, E. (Eds.) (2007). Algorithms - ESA 2007: 15th Annual European Symposium, Eilat, Israel, October 8-10, 2007. Proceedings. Springer. Lecture Notes in Computer Science Vol. 4698 https://doi.org/10.1007/978-3-540-75520-3

Arge, L. & Freivalds, R. M. (Eds.) (2006). Algorithm Theory - SWAT 2006: 10th Scandinavian Workshop on Algorithm Theory, Riga, Latvia, July 6-8, 2006. Proceedings. Springer. Lecture Notes in Computer Science Vol. 4059

Arge, L., de Berg, M. & Haverkort, H. (2005). Cache-Oblivious R-trees. In J. Mitchell & G. Rote (Eds.), Proceedings of 21th ACM Symposium on Computational Geometry (pp. 170-179). Association for Computing Machinery.

Danvy, O. & Millikin, K. (2009). Refunctionalization at Work. Science of Computer Programming, 74(8), 534-549. https://doi.org/10.1016/j.scico.2009.02.001

Danvy, O. & Millikin, K. (2008). On the equivalence between small-step and big-step abstract machines: a simple application of lightweight fusion. Information Processing Letters, 106(3), 100-109.

Danvy, O. & Millikin, K. (2007). On One-Pass CPS Transformations. Journal of Functional Programming, 17(6), 793-812.

Hansen, K. A. (2007). Computing Symmetric Boolean Functions by Circuits with Few Exact Threshold Gates. In G. Lin (Ed.), Computing and Combinatorics: 13th Annual International Conference, COCOON 2007, Banff, Canada, July 16-19, 2007. Proceedings (pp. 448-458). Springer. https://doi.org/10.1007/978-3-540-73545-8_44

Caspersen, M. E., Alphonce, C. & Decker, A. (2007). Killer "Killer Examples" for Design Patterns. S I G C S E Bulletin Inroads, 39(1), 228-232. https://doi.org/10.1145/1227504.1227390

Bennedsen, J. & Caspersen, M. E. (2008). Optimists Have More Fun, But Do They Learn Better? On the Influence of Emotional and Social Factors on Learning CS and Math. Computer Science Education, 18(1), 1-16. https://doi.org/10.1080/08993400701791133

Caspersen, M. E., Bennedsen, J. & Larsen, K. D. (2007). Mental Models and Programming Aptitude. S I G C S E Bulletin Inroads, 39(3), 206-210. https://doi.org/10.1145/1269900.1268845

Caspersen, M. E., Börstler, J. & Nordström, M. (2007). Beauty and the Beast: Toward a Measurement Framework for Example Program Quality. Department of Computing Science, Umeå University, Sweden.

Bennedsen, J. & Caspersen, M. E. (2007). Failure Rates in Introductory Programming. S I G C S E Bulletin Inroads, 39(2), 32-36. https://doi.org/10.1145/1272848.1272879

Caspersen, M. E. & Bennedsen, J. (2007). Instructional Design of a Programming Course: A Learning Theoretic Approach. In Proceedings of the Third International Workshop on Computing Education Research (pp. 111-122). Association for Computing Machinery. https://doi.org/10.1145/1288580.1288595

Caspersen, M. E. & Bennedsen, J. (2007). Assessing Process and Product: A Practical Lab Exam for an Introductory Programming Course. Innovations in Teaching and Learning in Information and Computer Sciences, 6(4), 183-202. http://www.ics.heacademy.ac.uk/italics/vol6iss4/Bennedsen.pdf

Weyer, K., Boldt, H. B., Poulsen, C. B., Kjaer-Sorensen, K., Gyrup, C. & Oxvig, C. (2007). A substrate specificity-determining unit of three Lin12-Notch repeat modules is formed in trans within the pappalysin-1 dimer and requires a sequence stretch C-terminal to the third module. Journal of Biological Chemistry, 282(15), 10988-99. https://doi.org/10.1074/jbc.M607903200

Jørgensen, J.-E. & Keller, L. (2008). Magnetic ordering in HoBaCo₂O_5.5. Physical Review B, 77, 24427-1-7.

Christensen, A. N., Jensen, T. R., Bahl, C. R. H. & DiMasi, E. (2007). Nano size crystals of goethite, α-FeOOH: Synthesis and thermal transformation. Journal of Solid State Chemistry, 180, 1431-1435.

Zande, L. V. D., Vliet, M. V. D., Pertoldi, C., Loeschcke, V., Müskens, G. & Bijlsma, R. (2007). Genetic structure within and among regional populations of the Eurasian badger (Meles meles) from Denmark and the Netherlands. Journal of Zoology, 271, 302-309. https://doi.org/10.1111/j.1469-7998.2006.00206.x

Nielsen, R. K., Pertoldi, C. & Loeschcke, V. (2007). Genetic evaluation of the captive breeding program of the Persian wild ass. Journal of Zoology, 272, 349-357. https://doi.org/10.1111/j.1469-7998.2007.00294.x

Hájková, P., Pertoldi, C., Ukendt, Z., Roche, K., Hájek, B., Bryja, J. & Zima, J. (2007). Genetic structure and evidence for recent population decline in Eurasian otter populations in the Czech and Slovak Republics: implications for conservation. Journal of Zoology, 272, 1-9. https://doi.org/10.1111/j.1469-7998.2006.00259.x

Barkhordarian, G., Jensen, T. R., Doppiu, S., Bösenberg, U., Borgschulte, A., Gremaud, R., Cerenius, Y., Dornheim, M., Klassen, T. & Bormann, R. (2008). Formation of Ca(BH₄)₂ from Hydrogenation of CaH₂ + MgB₂ Composite. Journal of Physical Chemistry Part C: Nanomaterials and Interfaces, 112, 2743-2749.

Merrison, J. P., Gunnlaugsson, H. P., Kinch, K., Nørnberg, P. & Rasmussen, K. R. (2004). Instruments for the Analysis of the Martian Dust Aerosol . ESA, (SP-543), 179-182.

Hoffmann, HJ., Tabaksblat, LM., Enghild, J. J. & Dahl, R. (2008). Human skin keratins are the major proteins in exhaled breath condensate. European Respiratory Journal.

Gunnlaugsson, H. P., Merrison, J. P., Mossin, L. A., Nørnberg, P., Sanden, J., Uggerhøj, E. & Weyer, G. (2002). Can Mössbauer spectroscopy reveal the origin of magnetic soil in Denmark. Proceedings of the 5th Seeheim conf. on Mössbauer spec.

Damgaard, C. K., Kahns, S., Lykke-Andersen, S., Nielsen, A. L., Jensen, T. H. & Kjems, J. (2008). A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo. Molecular Cell, 29(2), 271-278. https://doi.org/10.1016/j.molcel.2007.11.035, https://doi.org/10.1016/j.molcel.2007.11.035

Staudt Kvistgaard, A., Sørensen, E. S. & Burling, H. (2007). Bovine osteopontin formulations for the improvement of the wound healing process. (Patent No. WO 2007/068252 A2).

Christensen, B., Petersen, T. E. & Sørensen, E. S. (2008). Posttranslational modification and proteolytic processing of urinary osteopontin. Biochemical Journal, 411, 53-61.

Hunter, G. K., Grohe, B., Jeffrey, S., O’Young, J., Sørensen, E. S. & Goldberg, H. A. (2009). Role of phosphate groups in inhibition of calcium oxalate crystal growth by osteopontin. Cells, Tissues, Organs, 189, 44-50.

Kristensen, P., Ueda, H., Koijma, M., Ihara, M. & Kawakami, M. (2008). Open Sandwich ELISA Libraries. (Patent No. JP2008-032941).

Pertoldi, C., Bijlsma, R. & Loeschcke, V. (2008). Conservation genetics in a globally changing environment: present problems, paradoxes and future challenges. Biodiversity and Conservation, 16, 4147-4163.

Pertoldi, C., Bijlsma, R. & Loeschcke, V. (2007). Integrating population genetics and conservation biology: merging theoretical, experimental and applied approaches (Potsdam, Germany). Conserv Genet, 8, 1267-1268.

Stavru, F., Nautrup-Pedersen, G., Cordes, V. C. & Görlich, D. (2006). Nuclear pore complex assembly and maintenance in POM121- and gp210-deficient cells. Journal of Cell Biology, 173(4), 477-83. https://doi.org/10.1083/jcb.200601002

Nautrup Pedersen, G., Nyborg, J. & Clark, B. F. (1999). Macromolecular mimicry of nucleic acid and protein. IUBMB Life, 48(1), 13-8.

Holm, H. (2007). Cohen-Macaulay homological dimensions. Rendiconti del Seminario Matematico della Università di Padova, 117, 87-112.

Klokmose, C. N. & Beaudouin-Lafon, M. (2008). From Applications to Ubiquitous Instrumental Interaction. In CHI '00: Proceedings of the SIGCHI conference on Human factors in computing systems (pp. 446-453). Association for Computing Machinery.

Berlin, R. & Klokmose, C. N. (2007). Undo in Dynamic and Distributed User Interfaces. Poster session presented at Danish HCI Research Symposium, DHRS 2007, København, Denmark.

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