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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Dumoulin, C., Thorarinsdottir, T. & Stødkilde-Jørgensen, H. (2007). Bladder neck elevation during different pelvic floor activation techniques : An MRI study. Poster session presented at International Continence Society, Christchurch, New Zealand.
Miltersen, P. B. & Kristensen, J. T. (2006). Finding small OBDDs for incompletely specified truth tables is hard. In D. Z. Chen & D. T. Lee (Eds.), Computing and Combinatorics: 12th Annual International Conference, COCOON 2006, Taipei, Taiwan, August 15-18, 2006. Proceedings (pp. 489-496). Springer. https://doi.org/10.1007/11809678_51
Jørgensen, N., Laursen, J., Holm, P. E., Viksna, A. & Pind, N. (2002). Multi-element mapping of heavy metal containing pesticide residues on former horticultural soil. Poster session presented at 5th International Topical Meeting on Industrial Radiation and Radioisotope Measurement Applications, Bologna, Italy.
Miltersen, P. B., Kjeldgaard-Pedersen, J., Burgisser, P. & Allender, E. (2006). On the Complexity of Numerical Analysis. In Proceedings of the 21st Annual IEEE Conference on Computational Complexity (pp. 331-339). IEEE Computer Society Press.
Lunter, G., Miklós, I., Drummond, A., Jensen, J. L. & Hein, J. (2003). Bayesian phylogenetic inference under a statistical insertion-deletion model. In G. Benson & R. Page (Eds.), Algorithms in bioinformatics: Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003. Proceedings (pp. 228-244). Springer. https://doi.org/10.1007/978-3-540-39763-2_18
Madsen, G. K. H. (2006). Automated search for new thermoelectric materials: The case of LiZnSb. Journal of the American Chemical Society, 128, 12140-.
Madsen, G. K. H. & Singh, D. J. (2006). BoltzTraP. A code for calculating band-structure dependent quantities. Computer Physics Communications, 175, 67-.
Damgård, I. B., Nicolosi, A. & Fazio, N. (2006). Non-interactive Zero-Knowledge from Homomorphic Encryption. In S. Halevi & T. Rabin (Eds.), Theory of Cryptography: Third Theory of Cryptography Conference, TCC 2006, New York, NY, USA, March 4-7, 2006. Proceedings (pp. 41-59). Springer. https://doi.org/10.1007/11681878_3
Damgård, I. B., Nielsen, J. B., Toft, T., Kiltz, E. & Fitzi, M. (2006). Unconditionally Secure Constant-Rounds Multi-party Computation for Equality, Comparison, Bits and Exponentiation. In S. Halevi & T. Rabin (Eds.), Theory of Cryptography: Third Theory of Cryptography Conference, TCC 2006, New York, NY, USA, March 4-7, 2006. Proceedings (pp. 285-304). Springer. https://doi.org/10.1007/11681878_15
Damgård, I. B. (2006). Theory and Practice of Multiparty Computation. In R. De Prisco & M. Yung (Eds.), Security and Cryptography for Networks: 5th International Conference, SCN 2006, Maiori, Italy, September 6-8, 2006. Proceedings (pp. 360-364). Springer. https://doi.org/10.1007/11832072_25
Damgård, I. B. & Thorbek, R. (2006). Linear Integer Secret Sharing and Distributed Exponentiation. In M. Yung, Y. Dodis, A. Kiayias & T. Malkin (Eds.), Public Key Cryptography - PKC 2006: 9th International Conference on Theory and Practice in Public-Key Cryptography, New York, NY, USA, April 24-26, 2006. Proceedings (pp. 75-90). Springer. https://doi.org/10.1007/11745853_6
Damgård, I. B., Toft, T., Pagter, J. I., Jakobsen, T., Bogetoft, P. & Nielsen, K. (2006). A Practical Implementation of Secure Auctions Based on Multiparty Integer Computation. In G. Di Crescenzo & A. Rubin (Eds.), Financial Cryptography and Data Security: 10th International Conference, FC 2006 Anguilla, British West Indies, February 27-March 2, 2006 Revised Selected Papers (pp. 142-147). Springer. https://doi.org/10.1007/11889663_10
Almansa Guerra, J. F., Damgård, I. B. & Nielsen, J. B. (2006). Simplified Threshold RSA with Adaptive and Proactive Security. In S. Vaudenay (Ed.), Advances in Cryptology - Eurocrypt 2006: 24th Annual International Conference on the Theory and Applications of Cryptographic Techniques, St. Petersburg, Russia, May 28 - June 1, 2006. Proceedings (pp. 593-611). Springer. https://doi.org/10.1007/11761679_35
Christensen, H. B. (2004). Frameworks: Putting Design Patterns into Perspective. In 9th Annual SIGCSE Conference on Innovation and Technology in Computer Science Education (pp. 142-145). Association for Computing Machinery. https://doi.org/10.1145/1026487.1008035
Damgård, I. B. & Ishai, Y. (2006). Scalable Secure Multiparty Computation. In C. Dwork (Ed.), Advances in Cryptology - CRYPTO 2006: 26th Annual International Cryptology Conference, Santa Barbara, California, USA, August 20-24, 2006. Proceedings (pp. 501-520). Springer. https://doi.org/10.1007/11818175_30
Damgård, I. B., Fehr, S., Salvail, L. & Schaffner, C. (2006). Oblivious Transfer and Linear Functions. In C. Dwork (Ed.), Advances in Cryptology - CRYPTO 2006: 26th Annual International Cryptology Conference, Santa Barbara, California, USA, August 20-24, 2006. Proceedings (pp. 427-444). Springer. https://doi.org/10.1007/11818175_26
Besenbacher, F. (1996). Scanning tunneling microscopy studies of metal surfaces. Reports on Progress in Physics, 59, 1737.
Olesen, L., Hansen, K., Lægsgaard, E., Stensgaard, I. & Besenbacher, F. (1997). Metallic nanowires: formation and quantized conductance. In P. A. Serena & N. Garcia (Eds.), Proceedings of the NATO Advanced Research Workshop on Nanowires (pp. 191). Kluwer Academic Publishers.
Rottach, D. R., Curro, J. G., Budzien, J., Grest, G. S., Svaneborg, C. & Everaers, R. (2006). Permanent Set of Cross-Linking Networks: Comparison of Theory with Molecular Dynamics Simulations. Macromolecules, 39(16), 5521-5530. https://doi.org/10.1021/ma060767x
Rottach, D. R., Curro, J. G., Budzien, J., Grest, G. S., Svaneborg, C. & Everaers, R. (2007). Molecular Dynamics Simulations of Polymer Networks Undergoing Sequential Cross-Linking and Scission Reactions. Macromolecules, 40, 131-139. https://doi.org/10.1021/ma062139l
Schiøtt, B., Celik, L. & Lie, M. A. (2005). Cofactor Activation and Substrate Binding in Pyruvate Decarboxylase. Insights into the Reaction mechanism from Molecular Dynamics Simulations. Poster session presented at World Association of Theoretically Oriented Chemists, world congress, Cape Town, South Africa.
Schiøtt, B., Sørensen, J., Clausen, H. F., Poulsen, R. D. & Iversen, B. B. (2005). Short strong hydrogen bonding in 2-acetyl-1,8-dihydroxy-3,6-dimethylnaphtalene. Poster session presented at XVIth International Conference "Horizons in Hydrogen Bond Research", Roskilde, Denmark.
Schiøtt, B., Celik, L., Sinning, S. & Wiborg, O. (2006). Binding of Serotonin in a Homology Model of the Serotonin Transporter. Poster session presented at 1st European Chemistry Congress, Budapest, Hungary.
Schiøtt, B., Celik, L. & Lund, J. D. D. (2006). Molecular Dynamics Simulations of the Estrogen Receptor α. Poster session presented at International Society of QuantumBiology and  Pharmacology. 6th Presidents Meeting., Strassbourg, France.
Collie, JS., Richardson, K., Steele, JH. & Mouritsen, L. T. (2004). Physical forcing and ecological feedbacks in marine regimeshifts. ICES C.M., (M:06).
Mouritsen, L. T., Bråten, S., Hoffmann, E. & Richardson, K. (2005). Fisk i Limfjorden -en saga blot? In Marine områder 2004 -Tilstand og udvikling i miljø- og naturkvaliteten.: Faglig Rapport fra DMU (Vol. 551). Danmarks Miljøundersøgelser, Aarhus Universitet.
Mouritsen, KN., Mouritsen, L. T. & Jensen, KT. (1998). Change in topography and sediment characteristics on an intertidal mudflat following mass mortality of the amphipod Corophium volutator L. Journal of the Marine Biological Association of the United Kingdom, 78, 1-14.
Glasius, M., Ketzel, M., Wåhlin, P., Jensen, B., Mønster, J., Berkowicz, R. & Palmgren, F. (2006). Impact of wood combustion on particle levels in a residential area in Denmark. Atmospheric Environment, 40(37), 7115-7124. https://doi.org/10.1016/j.atmosenv.2006.06.047
Nguyen, N. H. T., Nielsen, M. B., Andersen, F. F., Jensen, S. J., Brinkmann, C. R., Hede, M. S., Petersen, R. L., Knudsen, B. R. & Frøhlich, R. F. (2006). Investigating the role of residues 191-206 within the N-terminal domain of human topoisomerase I in vivo. Poster session presented at Investigating the role of residues 191-206 within the N-terminal domain of human topoisomerase I in vivo.
Bouvin, N. O., Brodersen, A. C., Bødker, S., Hansen, F. A. & Klokmose, C. N. (2006). A comparative study of map use. In Proceedings of CHI '06: CHI '06 extended abstracts on Human Factors in Computing Systems (pp. 592-597). ACM Spring Proceedings. https://doi.org/10.1145/1125451.1125575
Ketzel, M., Omstedt, G., Johansson, C., Düring, I., Berkowicz, R., Pohjola, M., Oettl, D., Wåhlin, P., Glasius, M. & Palmgren, F. (2006). Vehicle emission factors for PM2.5/PM10 exhaust and non-exhaust and soot emissions. In H. Vehkamäki, T. Bergman, J. Julin, M. Salonen & M. Kulmala (Eds.),  NOSA 2006 Aerosol symposium, combined with the X Finnish National Aerosol Symposium, Finnish-Czech Aerosol Symposium, and BACCI workshop, Helsinki 8.-10.11. 2006 (Vol. Report Series in Aerosol Science A 83, pp. 143-145). Finnish Association for Aerosol Research.
Anderson, K. M., Hansen, F. A. & Bouvin, N. O. (2006). Templates and Queries in Contextual Hypermedia. In Proceedings of the 17th ACM Hypertext 2006 Conference (pp. 99-110). Association for Computing Machinery. https://doi.org/10.1145/1149941.1149961
Kjeldbjerg, A. L. & Pedersen, F. S. (2006). Three newly discovered envelope genes from human endogenous retroviruses are highly conserved through primate evolution. Poster session presented at 31st Annual Meeting on Retroviruses 2006, Cold Spring Harbor, United States.
Corry, A. V., Ingstrup, M. & Larsen, S. B. (2006). Beyond the Archive: Thinking CSCW into EHRs for Home Care. In 1st International Conference on Pervasive Computing Technologies for Healthcare: First International Workshop on Connected Health: Using IT to Integrate the HealthCare Enterprise IEEE. https://doi.org/10.1109/PCTHEALTH.2006.361695

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Larsen, K. (2004). Morten Lange 1919-2003. Mindeord. Nordic Journal of Botany, 23, 153-154.
Bonaventura, C., Crumbliss, A. L. & Weber, R. E. (2004). New insights into the proton-dependent oxygen affinity of Root effect haemoglobins. Acta Physiologica, 182, 245-258.
Nicolaisen, M. H., Risgaard-Petersen, N., Revsbech, N. P., Reichardt.W. & Ramsing, N. B. (2004). Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in a high yield irrigated Philippine rice field. FEMS Microbiology Ecology, 49, 359-369.
Øllgaard, B. (2004). Novelties in Neotropical Lycopodiaceae. Nordic Journal of Botany, 23(1), 31-47.
Barfod, A. S. (2004). Nyt syn på blomsterplanternes afstamning. In K. Finster & D. Parker (Eds.), Kompendium i Natur og Teori Biologisk Institut, AU..
Barfod, A., Balslev, H. & Nielsen, I. (2004). Orbituary - Jonas Erik Lawesson. Nordic Journal of Botany, 23(1), 5-10.
Pirow, R. & Weber, R. E. (2004). Oxygen binding and its allosteric control in haemoglobin of the branchiopod crustacean Triops cancriformis. Paper presented at International Symposium on Animal Physiology, Biotechnikum Greifswald, 3-5 June.
Fago, A., Hundahl, C., Weber, R. E., Dewilde, S. & Moens, L. (2004). Oxygen binding properties of human neuroglobin and cytoglobin. Paper presented at International Symposium on Animal Physiology, Biotechnikum Greifswald, 3-5 June, 2004.
Kjeldsen, K. U., Joulian, C. & Ingvorsen, K. (2004). Oxygen tolerance of sulfate-reducing bacteria in activated sludge. Environmental Science & Technology, 38, 2038-2043.
Tompkins, D. M., Mouritsen, K. N. & Poulin, R. (2004). Parasite-induced surfacing in the cockle Austrovenus stutchburyi: adaptation or not? Journal of Evolutionary Biology, 17, 247-256.
Nielsen, L. P., Enrich-Prast, A. & Esteves, F. A. (2004). Pathways of organic matter mineralization and nitrogen regeneration in the sediment of five tropical lakes. Acta Limnologica Brasiliensia, 16(2), 193-202.
Barth, H., Larsen, P. S., Roepstorff, P., Boero, F., Dolan, J., Sommer, U., Zupo, V., Vermaat, J., Anderson, T. R., Kneib, R. T., Lomstein, B. A., Jenkinson, I. & Shumway, S. E. (2004). Peer review: journal articles versus research proposals. Mar. Ecol. Prog. Ser., 277, 301-309.
Arias, C. A. & Brix, H. (2004). Phosphorus removal in constructed wetlands: Can suitable alternative media be identified?. Paper presented at Avignon, France, 26-30 September 2004, Avignon, France.
Wessig, P., Glombitza, C., Müller, G. & Teubner, J. (2004). Photochemical Preparation of Highly Functionalized 1-Indanones. Journal of Organic Chemistry, 69(22), 7582-7591. https://doi.org/10.1021/jo040173x
Collie, JS., Richardson, K., Steele, JH. & Mouritsen, L. T. (2004). Physical forcing and ecological feedbacks in marine regimeshifts. ICES C.M., (M:06).
Lassen, M. F., Bramm., M. E., Richardson, K., Yusoff, F. & Shariff, M. (2004). Phytoplankton community composition and size distribution in the Langat River estuary, Malaysia. Estuaries and Coasts, 27(4), 716-728.
Overgaard, J., Stecyk, J. A. W., Gesser, H., Wang, T., Gamperl, A. K. & Farrell, A. P. (2004). Preconditioning stimuli do not benefit the myocardium of hypoxia-tolerant rainbow trout (Oncorhynchus mykiss). Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 174, 329-340.
Jensen, L. U., Lawesson, J., Balslev, H. & Forchhammer, M. C. (2004). Predicting the distribution of Carpinus betulus in Denmark with Ellenbergs Climate Quotient. Nordic Journal of Botany, 23, 57-67.
Wang, T., Axelsson, M., Altimiras, J., Klein, W., Andrade, D., Abe, A. S., Ip, A., Lee, S. & Martelli, P. (2004). Pressure separation in the undivided snake heart: Correlations with high metabolic rate during digestion or incubation of eggs? (pp. 51-51).
Meyer, R. L., Zeng, R., Giugliano, V., Keller, J. & Blackall, L. L. (2004). Production of N2O from denitrifying bacteria using stored carbon as electron donor. Paper presented at International Symposium for Microbial Ecology, Cancun, Mexico.
Neretin, LN., Bottcher, ME., Jørgensen, BB., Volkov, II., Luschen, H. & Hilgenfeldt, K. (2004). Pyritization processes and greigite formation in the advancing sulfidization front in the Upper Pleistocene sediments of the Black Sea. Geochimica et Cosmochimica Acta, 68(9), 2081-2093.
Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. S. (2004). RBT -- A tool for building refined Buneman trees. Bioinformatics, doi:10.1093/bti195, in press.
Herold, S., Fago, A., Weber, R. E., Dewilde, S. & Moens, L. (2004). Reactivity studies of the Fe(III) and Fe(II)NO forms of human neuroglobin reveal a potential role against oxidative stress. Journal of Biological Chemistry, 279(22), 22841-22847.
Campbell, K. L., Bonaventura, J. & Weber, R. E. (2004). Recent evolution of a novel low oxygen-affinity, low erythrocytic cofactor sensitivity hemoglobin in the fossorial Eastern mole (Scalopus aquaticus). Paper presented at Canadian Society of Zoologists meeting in Nova Scotia 11-15 May.
Olesen, B., Marba, N., Duarte, C. M., Savela, C. M. & Fortes, M. D. (2004). Recolonization dynamics in a mixed seagrass meadow: the role of clonal versus sexual processes. Estuaries and Coasts, 27(5), 770-780.
Thorbek, P. & Bilde, T. (2004). Reduced numbers of generalist arthropod predators after crop management. Journal of Applied Ecology, 41, 526-538.
Collie, J. S., Richardson, K. & Steele, J. H. (2004). Regime shifts: can ecological theory illuminate the mechanisms? Progress in Oceanography, 60, 281-302.
Birkedal, R. & Gesser, H. (2004). Regulation of mitochondrial energy production in cardiac cells of rainbow trout (Oncorhynchus mykiss). Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 174, 255-262.
Weber, R. E., Fago, A., Bang, A., Voelter, W. & Low, S. P. (2004). Regulation of red cell glycolysis: interactions between vertebrate hemoglobins and band 3 red cell membrane proteins. Paper presented at International Symposium on Animal Physiology, Biotechnikum Greifswald, 3-5 June, 2004.
Brix, H. & Johansen, N. H. (2004). Retningslinier for etablering af beplantede filteranlæg op til 30 PE. In Ikke angivet (52 ed., pp. 1-49). Miljøstyrelsen.
Gustafsson, M., Smith, N. (Ed.), Mori, S. A. (Ed.), Henderson, A. (Ed.), Stevenson, D. W. (Ed.) & Heald, S. V. (Ed.) (2004). Rhizophoraceae. In Flowering plants of the Neotropics (pp. 324-326)
Fago, A., Herold, S., Weber, R. E., Dewilde, S. & Moens, L. (2004). Scavenging of reactive oxygen species by human neuroglobin may protect brain from oxygen lack. Paper presented at International Symposium on Animal Physiology, Biotechnikum Greifswald, 3-5 June , 2004.
Vinther, N., Christiansen, C., Bartholdy, J., Sørensen, C. & Lund-Hansen, L. C. (2004). Sediment transport across a tidal divide in the Danish Wadden Sea. Geografisk Tidsskrift - Danish Journal of Geography, 104(1), 71-86.