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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Miltersen, P. B. & Kristensen, J. T. (2006). Finding small OBDDs for incompletely specified truth tables is hard. In D. Z. Chen & D. T. Lee (Eds.), Computing and Combinatorics: 12th Annual International Conference, COCOON 2006, Taipei, Taiwan, August 15-18, 2006. Proceedings (pp. 489-496). Springer. https://doi.org/10.1007/11809678_51
Jørgensen, N., Laursen, J., Holm, P. E., Viksna, A. & Pind, N. (2002). Multi-element mapping of heavy metal containing pesticide residues on former horticultural soil. Poster session presented at 5th International Topical Meeting on Industrial Radiation and Radioisotope Measurement Applications, Bologna, Italy.
Miltersen, P. B., Kjeldgaard-Pedersen, J., Burgisser, P. & Allender, E. (2006). On the Complexity of Numerical Analysis. In Proceedings of the 21st Annual IEEE Conference on Computational Complexity (pp. 331-339). IEEE Computer Society Press.
Lunter, G., Miklós, I., Drummond, A., Jensen, J. L. & Hein, J. (2003). Bayesian phylogenetic inference under a statistical insertion-deletion model. In G. Benson & R. Page (Eds.), Algorithms in bioinformatics: Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003. Proceedings (pp. 228-244). Springer. https://doi.org/10.1007/978-3-540-39763-2_18
Madsen, G. K. H. (2006). Automated search for new thermoelectric materials: The case of LiZnSb. Journal of the American Chemical Society, 128, 12140-.
Madsen, G. K. H. & Singh, D. J. (2006). BoltzTraP. A code for calculating band-structure dependent quantities. Computer Physics Communications, 175, 67-.
Damgård, I. B., Nicolosi, A. & Fazio, N. (2006). Non-interactive Zero-Knowledge from Homomorphic Encryption. In S. Halevi & T. Rabin (Eds.), Theory of Cryptography: Third Theory of Cryptography Conference, TCC 2006, New York, NY, USA, March 4-7, 2006. Proceedings (pp. 41-59). Springer. https://doi.org/10.1007/11681878_3
Damgård, I. B., Nielsen, J. B., Toft, T., Kiltz, E. & Fitzi, M. (2006). Unconditionally Secure Constant-Rounds Multi-party Computation for Equality, Comparison, Bits and Exponentiation. In S. Halevi & T. Rabin (Eds.), Theory of Cryptography: Third Theory of Cryptography Conference, TCC 2006, New York, NY, USA, March 4-7, 2006. Proceedings (pp. 285-304). Springer. https://doi.org/10.1007/11681878_15
Damgård, I. B. (2006). Theory and Practice of Multiparty Computation. In R. De Prisco & M. Yung (Eds.), Security and Cryptography for Networks: 5th International Conference, SCN 2006, Maiori, Italy, September 6-8, 2006. Proceedings (pp. 360-364). Springer. https://doi.org/10.1007/11832072_25
Damgård, I. B. & Thorbek, R. (2006). Linear Integer Secret Sharing and Distributed Exponentiation. In M. Yung, Y. Dodis, A. Kiayias & T. Malkin (Eds.), Public Key Cryptography - PKC 2006: 9th International Conference on Theory and Practice in Public-Key Cryptography, New York, NY, USA, April 24-26, 2006. Proceedings (pp. 75-90). Springer. https://doi.org/10.1007/11745853_6
Damgård, I. B., Toft, T., Pagter, J. I., Jakobsen, T., Bogetoft, P. & Nielsen, K. (2006). A Practical Implementation of Secure Auctions Based on Multiparty Integer Computation. In G. Di Crescenzo & A. Rubin (Eds.), Financial Cryptography and Data Security: 10th International Conference, FC 2006 Anguilla, British West Indies, February 27-March 2, 2006 Revised Selected Papers (pp. 142-147). Springer. https://doi.org/10.1007/11889663_10
Almansa Guerra, J. F., Damgård, I. B. & Nielsen, J. B. (2006). Simplified Threshold RSA with Adaptive and Proactive Security. In S. Vaudenay (Ed.), Advances in Cryptology - Eurocrypt 2006: 24th Annual International Conference on the Theory and Applications of Cryptographic Techniques, St. Petersburg, Russia, May 28 - June 1, 2006. Proceedings (pp. 593-611). Springer. https://doi.org/10.1007/11761679_35
Christensen, H. B. (2004). Frameworks: Putting Design Patterns into Perspective. In 9th Annual SIGCSE Conference on Innovation and Technology in Computer Science Education (pp. 142-145). Association for Computing Machinery. https://doi.org/10.1145/1026487.1008035
Damgård, I. B. & Ishai, Y. (2006). Scalable Secure Multiparty Computation. In C. Dwork (Ed.), Advances in Cryptology - CRYPTO 2006: 26th Annual International Cryptology Conference, Santa Barbara, California, USA, August 20-24, 2006. Proceedings (pp. 501-520). Springer. https://doi.org/10.1007/11818175_30
Damgård, I. B., Fehr, S., Salvail, L. & Schaffner, C. (2006). Oblivious Transfer and Linear Functions. In C. Dwork (Ed.), Advances in Cryptology - CRYPTO 2006: 26th Annual International Cryptology Conference, Santa Barbara, California, USA, August 20-24, 2006. Proceedings (pp. 427-444). Springer. https://doi.org/10.1007/11818175_26
Besenbacher, F. (1996). Scanning tunneling microscopy studies of metal surfaces. Reports on Progress in Physics, 59, 1737.
Olesen, L., Hansen, K., Lægsgaard, E., Stensgaard, I. & Besenbacher, F. (1997). Metallic nanowires: formation and quantized conductance. In P. A. Serena & N. Garcia (Eds.), Proceedings of the NATO Advanced Research Workshop on Nanowires (pp. 191). Kluwer Academic Publishers.
Rottach, D. R., Curro, J. G., Budzien, J., Grest, G. S., Svaneborg, C. & Everaers, R. (2006). Permanent Set of Cross-Linking Networks: Comparison of Theory with Molecular Dynamics Simulations. Macromolecules, 39(16), 5521-5530. https://doi.org/10.1021/ma060767x
Rottach, D. R., Curro, J. G., Budzien, J., Grest, G. S., Svaneborg, C. & Everaers, R. (2007). Molecular Dynamics Simulations of Polymer Networks Undergoing Sequential Cross-Linking and Scission Reactions. Macromolecules, 40, 131-139. https://doi.org/10.1021/ma062139l
Schiøtt, B., Celik, L. & Lie, M. A. (2005). Cofactor Activation and Substrate Binding in Pyruvate Decarboxylase. Insights into the Reaction mechanism from Molecular Dynamics Simulations. Poster session presented at World Association of Theoretically Oriented Chemists, world congress, Cape Town, South Africa.
Schiøtt, B., Sørensen, J., Clausen, H. F., Poulsen, R. D. & Iversen, B. B. (2005). Short strong hydrogen bonding in 2-acetyl-1,8-dihydroxy-3,6-dimethylnaphtalene. Poster session presented at XVIth International Conference "Horizons in Hydrogen Bond Research", Roskilde, Denmark.
Schiøtt, B., Celik, L., Sinning, S. & Wiborg, O. (2006). Binding of Serotonin in a Homology Model of the Serotonin Transporter. Poster session presented at 1st European Chemistry Congress, Budapest, Hungary.
Schiøtt, B., Celik, L. & Lund, J. D. D. (2006). Molecular Dynamics Simulations of the Estrogen Receptor α. Poster session presented at International Society of QuantumBiology and  Pharmacology. 6th Presidents Meeting., Strassbourg, France.
Collie, JS., Richardson, K., Steele, JH. & Mouritsen, L. T. (2004). Physical forcing and ecological feedbacks in marine regimeshifts. ICES C.M., (M:06).
Mouritsen, L. T., Bråten, S., Hoffmann, E. & Richardson, K. (2005). Fisk i Limfjorden -en saga blot? In Marine områder 2004 -Tilstand og udvikling i miljø- og naturkvaliteten.: Faglig Rapport fra DMU (Vol. 551). Danmarks Miljøundersøgelser, Aarhus Universitet.
Mouritsen, KN., Mouritsen, L. T. & Jensen, KT. (1998). Change in topography and sediment characteristics on an intertidal mudflat following mass mortality of the amphipod Corophium volutator L. Journal of the Marine Biological Association of the United Kingdom, 78, 1-14.
Glasius, M., Ketzel, M., Wåhlin, P., Jensen, B., Mønster, J., Berkowicz, R. & Palmgren, F. (2006). Impact of wood combustion on particle levels in a residential area in Denmark. Atmospheric Environment, 40(37), 7115-7124. https://doi.org/10.1016/j.atmosenv.2006.06.047
Nguyen, N. H. T., Nielsen, M. B., Andersen, F. F., Jensen, S. J., Brinkmann, C. R., Hede, M. S., Petersen, R. L., Knudsen, B. R. & Frøhlich, R. F. (2006). Investigating the role of residues 191-206 within the N-terminal domain of human topoisomerase I in vivo. Poster session presented at Investigating the role of residues 191-206 within the N-terminal domain of human topoisomerase I in vivo.
Bouvin, N. O., Brodersen, A. C., Bødker, S., Hansen, F. A. & Klokmose, C. N. (2006). A comparative study of map use. In Proceedings of CHI '06: CHI '06 extended abstracts on Human Factors in Computing Systems (pp. 592-597). ACM Spring Proceedings. https://doi.org/10.1145/1125451.1125575
Ketzel, M., Omstedt, G., Johansson, C., Düring, I., Berkowicz, R., Pohjola, M., Oettl, D., Wåhlin, P., Glasius, M. & Palmgren, F. (2006). Vehicle emission factors for PM2.5/PM10 exhaust and non-exhaust and soot emissions. In H. Vehkamäki, T. Bergman, J. Julin, M. Salonen & M. Kulmala (Eds.),  NOSA 2006 Aerosol symposium, combined with the X Finnish National Aerosol Symposium, Finnish-Czech Aerosol Symposium, and BACCI workshop, Helsinki 8.-10.11. 2006 (Vol. Report Series in Aerosol Science A 83, pp. 143-145). Finnish Association for Aerosol Research.
Anderson, K. M., Hansen, F. A. & Bouvin, N. O. (2006). Templates and Queries in Contextual Hypermedia. In Proceedings of the 17th ACM Hypertext 2006 Conference (pp. 99-110). Association for Computing Machinery. https://doi.org/10.1145/1149941.1149961
Kjeldbjerg, A. L. & Pedersen, F. S. (2006). Three newly discovered envelope genes from human endogenous retroviruses are highly conserved through primate evolution. Poster session presented at 31st Annual Meeting on Retroviruses 2006, Cold Spring Harbor, United States.
Corry, A. V., Ingstrup, M. & Larsen, S. B. (2006). Beyond the Archive: Thinking CSCW into EHRs for Home Care. In 1st International Conference on Pervasive Computing Technologies for Healthcare: First International Workshop on Connected Health: Using IT to Integrate the HealthCare Enterprise IEEE. https://doi.org/10.1109/PCTHEALTH.2006.361695
Gerhardy, P. & Kohlenbach, U. (2006). Strongly uniform bounds from semi-constructive proofs. Annals of Pure and Applied Logic, 141, 89-107.

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Wahlberg, M. & Westerberg, H. (2004). Sovjetiske ubåde eller pruttende sild? Fisk & Hav, 57, 12-22.
Møhl, B. (2004). Sperm whale sonar rivals tactical sonar with source levels at 235 dB. In European Cetacean Society Newsletter (pp. 41-42)
Konnerup, J., Madsen, A. B. & Jørgensen, J. M. (2004). Større pattedyrs brug af en ny faunaoverføring ved Jyske Ås i Nordlyllands Amt. Flora & fauna : årsskrift for Jydsk Naturhistorisk Forening, 110(2), 49-55.
Weber, R. (2004). The amazing world of hemoglobins. Paper presented at 23rd ESCPB Conference, Cesenatico, Italy, 23-26 September.
Galli, G., Skovgaard, N., Taylor, E. W., Abe, A. S., Conlon, J. M. & Wang, T. (2004). The cardiovascular actions of native bradykinin in the South American rattlesnake Crotalus durissus. (pp. 66-66).
Galli, G., Taylor, E. W. & Wang, T. (2004). The cardiovascular responses of the freshwater turtle Trachemys scripta to warming and cooling. Journal of Experimental Biology, 207, 1471-1478.
Bonaventura, C., Fago, A., Henkens, R., Stevens, R. & Crumbliss, A. L. (2004). The case of the missing nitrosyl hemoglobin. (pp. 139-139).
Lorenzen, B., Brix, H. & Mendelssohn, I. A. (2004). The effects of phosphorus availability on growth and nutrient uptake kinetics of the two Everglades species, Eleocharis cellulosa and Rhychospora tracyi. Paper presented at The effects of phosphorus availability on growth and nutrient uptake kinetics of the two Everglades species, Eleocharis cellulosa and Rhychospora tracyi.
Als, T. D., Vila, R., Kandul, N. P., Nash, D. R., Yen, S.-H., Hsu, Y.-F., Mignault, A. A., Boomsma, J. J. & Pierce, N. E. (2004). The evolution of alternative parasitic life histories in large blue butterflies. Nature, 432(7015), 386-90. https://doi.org/10.1038/nature03020
Rafnar, T., Thorlacius, S., Steingrimsson, E., Schierup, M. H., Madsen, J. N., Calian, V., Eldon, B. J., Jonsson, T., Hein, J. & Thorgeirsson, S. S. (2004). The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer Jun, 4(6), 488-492.
Kamp, A. & Witte, U. (2004). The importance of macrofauna for carbon processing in a fine-grained sandy shelf sediment (North Sea): Experiments with 13C labelled phytoplankton. Poster session presented at 1st Nereis Park Conference, Carry-Le-Rouet, Bouches-du-Rhône , France.
Platt, C., Jørgensen, J. M. & Popper, A. N. (2004). The inner ear of the lungfish Protopterus. J. Comp. Neurology, 471, 277-288.
Hylleberg, J. (2004). The results of the Vietnamese Inventory. In The Third National Workshop on Marine Molluscs: Ministry of Fisheries, Hanoi (pp. 21-22 [in Vietnamese], 23 [in English]).
Weber, R. (2004). Thermodynamics of O2 binding to invertebrate respiratory pigments. Paper presented at Cesenatico, Italy, 23-26 September.
Pertoldi, C. & Topping, C. (2004). The use of agent-based modelling of genetics in conservation genetic studies. Journal for Nature Conservation, 12, 111-120.
Brix, H. (2004). The use of constructed wetlands for on-site treatment of wastewater. Paper presented at Utrecht, 25-30 July, 2004.
Lykke, A. M. (2004). The use of local knowledge in applied ecological research. A science that matters. Poster session presented at The use of local knowledge in applied ecological research. A science that matters.
Christiansen, C., Vølund, G. & Lund-Hansen, L. C. (2004). Tidal flat sediment dynamics in Ho Bugt, Denmark. Poster session presented at 6th International Conference on Tidal Sedimentology, Copenhagen, Denmark.
Valencia, R., Foster, R. B., Villa, G., Condit, R., Svenning, J.-C., Hernandez, C., Romoleroux, K., Losos, E., Magård, E. & Balslev, H. (2004). Tree species distributions and local habitat variation in the Amazon: large forest plot in eastern Ecuador. Journal of Ecology, 92, 214-229.
Valencia, R., Condit, R., Romoleroux, K., Foster, R. B., Munoz, G. V., Losos, E. C., Balslev, H., Svenning, J.-C. & Magård, E. (2004). Tree species diversity and distribution in a forest plot at Yasuní National Park, Amazonian Ecuador. In in: E.C. Losos and E. G. Leigh, Jr. (eds.). Tropical Forest Diversity and Dynamism, The University of Chicago Press, Chicago and London. (pp. 107-118)
Maar, T., Nielsen, T. G., Gooding, S., Tönnesson, K., Tiselius, P., Zervoudaki, S., Christou, E., Sell, A. & Richardson, K. (2004). Trophodynamic function of copepods, appendicularians and protozooplankton in the late summer zooplankton community in the Skagerrak. Mar. Biol., 144, 917-933.
Svenning, J.-C., Ejrnæs, R. (Ed.) & Fredshavn, J. (Ed.) (2004). Using the proceeding interglacials to provide a dynamic base-line for European nature. In Ikke angivet (pp. 32-36). DMU.
Borchsenius, F., Nielsen, P. K. & Lawesson, J. E. (2004). Vegetation structure and diversity of an ancient temperate deciduous forest in SW Denmark. Plant Ecology, 175, 121-135.
Andrade, D. V., De Toledo, L. F., Abe, A. S. & Wang, T. (2004). Ventilatory compensation of the alkaline tide during digestion in the snake Boa constrictor. Journal of Experimental Biology, 207, 1379-1385.
Brix, H., Gregersen, P., Gabriel, S. & Falsager, I. (2004). Willow systems for the treatment of wastewater in rural areas. Paper presented at Willow systems for the treatment of wastewater in rural areas, Avignon.
Valencia, R., Condit, R., Foster, R. B., Romoleroux, K., Munoz, G. V., Svenning, J.-C., Magård, E., Bass, M., Losos, E. C., Balslev, H., Losos, E. C. (Ed.) & Leigh, E. G. . J. (Ed.) (2004). Yasuní forest dynamic plot, Ecuador. In Tropical forest diversity and dynamism: Findings from a large-scale plot network (pp. 609-620)