Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Jones, N. C., Hoffmann, S. V. & Field, D. (2015). Chiral recognition in electron scattering by S- and R-2-butanol. Molecular Physics, 113(15-16), 2197-2203. https://doi.org/10.1080/00268976.2015.1018358

Jabaily, R. S., Shepherd, K. A., Gardner, A. G., Gustafsson, M. H. G., Howarth, D. G. & Motley, T. J. (2014). Historical biogeography of the predominantly Australian plant family Goodeniaceae. Journal of Biogeography, 41(11), 2057-2067. https://doi.org/10.1111/jbi.12363

Hedrick, M. S., Hansen, K., Wang, T., Lauridsen, H., Thygesen, J. & Pedersen, M. (2014). Visualising lymph movement in anuran amphibians with computed tomography. Journal of Experimental Biology, 217(17), 2990-2993. https://doi.org/10.1242/jeb.106906

Yuan, Y., Mills, M. J. L., Popelier, P. L. A. & Jensen, F. (2014). Comprehensive Analysis of Energy Minima of the 20 Natural Amino Acids. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 118(36), 7876-7891. https://doi.org/10.1021/jp503460m

Varbanov, H. P., Goeschl, S., Heffeter, P., Theiner, S., Roller, A., Jensen, F., Jakupec, M. A., Berger, W., Galanski, M. & Keppler, B. K. (2014). A Novel Class of Bis- and Tris-Chelate Diam(m)inebis(dicarboxylato)platinum(IV) Complexes as Potential Anticancer Prodrugs. Journal of Medicinal Chemistry, 57(15), 6751-6764. https://doi.org/10.1021/jm500791c

Jakobsen, S. & Jensen, F. (2014). Systematic Improvement of Potential-Derived Atomic Multipoles and Redundancy of the Electrostatic Parameter Space. Journal of Chemical Theory and Computation, 10(12), 5493-5504. https://doi.org/10.1021/ct500803r

Jensen, F. (2015). Segmented contracted basis sets optimized for nuclear magnetic shielding. Journal of Chemical Theory and Computation, 11(1), 132-138. https://doi.org/10.1021/ct5009526

Aastrup, P., Aronsson, M., Barry, T., Christensen, T., Cuyler, C., Doyle, M., Falk, K., Fox, A. D., Heiðmarsson, S., Helgason, H., Ibarguchi, G., Krogh, P. H., Lárusson, K. F., Murray, M., Payne, J., Price, C., Rasch, M., Salmela, J., Soloviev, M. ... Williams, S. (2014). Terrestrial Steering Group. 2014. Arctic Terrestrial Biodiversity Monitoring Plan: Implementation and work plan Akureyri, Iceland, February 25-27, 2014. CAFF International Secretariat, Akureyri, Iceland. CAFF Monitoring Series Report No. 11 http://www.caff.is/publications/doc_download/272-arctic-terrestrial-biodiversity-monitoring-plan-implementation-and-work-plan-akureyri-iceland-february-25-27-2014

Mogensen, L., Vestergaard, A. L., Mikkelsen, S., Coleman, J. A., Vilsen, B., Molday, R. S. & Andersen, J. P. (2014). Analysis of Amino Acid Residues of Potential Importance for Phosphati-dylserine Specificity of P4-type ATPase ATP8A2. Poster session presented at 14th International ATPase Conference “Na,K‐ATPase and related transport ATPases: Structure, mechanism, cell biology, health and disease”, Lunteren, Netherlands.

Holmkvist, L., Kamyshny Jr., A., Brüchert, V., Ferdelman, T. G. & Jørgensen, B. B. (2014). Sulfidization of lacustrine glacial clay upon Holocene marine transgression (Arkona Basin, Baltic Sea). Geochimica et Cosmochimica Acta, 142, 75-94. https://doi.org/10.1016/j.gca.2014.07.030

Kitahara, R. & Mulder, F. A. A. (2015). Is pressure-induced signal loss in NMR spectra for the Leu99Ala cavity mutant of T₄ lysozyme due to unfolding? Proceedings of the National Academy of Sciences (PNAS), 112(9), Article E923. https://doi.org/10.1073/pnas.1423279112

Maeno, A., Sindhikara, D., Hirata, F., Otten, R., Dahlquist, F. W., Yokoyama, S., Akasaka, K., Mulder, F. A. A. & Kitahara, R. (2015). Cavity as a Source of Conformational Fluctuation and High-Energy State: High-Pressure NMR Study of a Cavity-Enlarged Mutant of T4Lysozyme. Biophysical Journal, 108(1), 133-45. https://doi.org/10.1016/j.bpj.2014.11.012

Hernandez-Castellano, L. E., Argueello, A., Almeida, A. M., Castro, N. & Bendixen, E. (2015). Colostrum protein uptake in neonatal lambs examined by descriptive and quantitative liquid chromatography-tandem mass spectrometry. Journal of Dairy Science, 98(1), 135-147. https://doi.org/10.3168/jds.2014-8143

Branzei, S. & Miltersen, P. B. (2015). A Dictatorship Theorem for Cake Cutting. In Q. Yang & M. Wooldridge (Eds.), Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence (IJCAI 2015) (pp. 481-488). AAAI Press. http://ijcai.org/papers15/Papers/IJCAI15-074.pdf

Almeida, A. M., Bassols, A., Bendixen, E., Bhide, M., Ceciliani, F., Cristobal, S., Eckersall, P. D., Hollung, K., Lisacek, F., Mazzucchelli, G., McLaughlin, M., Miller, I., Nally, J. E., Plowman, J., Renaut, J., Rodrigues, P., Roncada, P., Staric, J. & Turk, R. (2015). Animal board invited review: advances in proteomics for animal and food sciences. Animal, 9(1), 1-17. https://doi.org/10.1017/S1751731114002602

Bendixen, E. (2014). Animal models for translational proteomics. Proteomics - Clinical Applications, 8(9-10), 637-639. https://doi.org/10.1002/prca.201470054

Restelli, L., Codrea, M. C., Savoini, G., Ceciliani, F. & Bendixen, E. (2014). LC-MS/MS analysis of visceral and subcutaneous adipose tissue proteomes in young goats with focus on innate immunity and inflammation related proteins. Journal of Proteomics, 108, 295-305. https://doi.org/10.1016/j.jprot.2014.05.027

Bundgaard, L., Jacobsen, S., Sorensen, M. A., Sun, Z., Deutsch, E. W., Moritz, R. L. & Bendixen, E. (2014). The Equine PeptideAtlas: A resource for developing proteomics-based veterinary research. Proteomics, 14(6), 763-773. https://doi.org/10.1002/pmic.201300398

Sauerwein, H., Bendixen, E., Restelli, L. & Ceciliani, F. (2014). The Adipose Tissue in Farm Animals: A Proteomic Approach. Current Protein and Peptide Science, 15(2), 146-155. https://doi.org/10.2174/1389203715666140221123105

Lauridsen, H., Da Silva, M.-A. O., Hansen, K., Jensen, H. M., Warming, M. K., Wang, T. & Pedersen, M. (2014). Ultrasound imaging of the anterior section of the eye of five different snake species. B M C Veterinary Research, 10(1), 959. https://doi.org/10.1186/s12917-014-0313-5

Ottosen, T.-B., Kakosimos, K. E., Johansson, C., Hertel, O., Brandt, J., Skov, H., Berkowicz, R., Ellermann, T., Jensen, S. S. & Ketzel, M. (2015). Analysis of the impact of inhomogeneous emissions in a semi-parameterized street canyon model. Geoscientific Model Development Discussions, 8(2), 935-977. https://doi.org/10.5194/gmdd-8-935-2015

Bochenkova, A. V., Klærke, B., Rahbek, D. B., Rajput, J., Toker, J. & Andersen, L. H. (2014). UV excited-state photoresponse of Biochromophore negative ions. Angewandte Chemie International Edition, 53(37), 9797-9801. https://doi.org/10.1002/anie.201404609

Toker, Y., Schwalm, D., Andersen, L. H., Heber, O. & Zajfman, D. (2014). Sidebands from longitudinal bunch oscillations in an electrostatic ion beam trap. Journal of Instrumentation, 9, Article 04008. https://doi.org/10.1088/1748-0221/9/04/P04008

Andersen, J. L., Nissen, P., Iversen, L. & Gesser, B. (2014). Methods and tools for identification of rsk/msk kinase inhibitors. (Patent No. WO2014048442 (A1)).

Taasti, V. T., Knudsen, H., Holzscheiter, M., Sobolevsky, N., Thomsen, B. & Bassler, N. (2015). Antiproton annihilation physics annihilation physics in the Monte Carlo particle transport code particle transport code SHIELD-HIT12A. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 347, 65-71. https://doi.org/10.1016/j.nimb.2015.02.002

Hutchins, A. P., Jauch, R., Dyla, M. & Miranda-Saavedra, D. (2014). glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data. Cell Regeneration, 3(1), 1-6. https://doi.org/10.1186/2045-9769-3-1

Guo, W. Y., Lambertini, C., Loc, N. X., Li, X. Z. & Brix, H. (2014). Preadaptation and post-introduction evolution facilitate the invasion of Phragmites australis in North America. Ecology and Evolution, 4(24), 4567-4577. https://doi.org/10.1002/ece3.1286

Wang, K., Sitsel, O., Meloni, G., Autzen, H. E., Andersson, M., Klymchuk, T., Nielsen, A. M., Rees, D. C., Nissen, P. & Gourdon, P. (2014). Structure and mechanism of Zn²⁺-transporting P-type ATPases. Nature, 514(7523), 518-522. https://doi.org/10.1038/nature13618

Skydsgaard, M. A. (2014). 1810 Lægevidenskab/1811 Vaccination/1853 Kolera. In Danmark bliver Danmark: Krig, damp og genier i 1800-tallet (pp. 9-10, 53). Aarhus Universitetsforlag.

Hylleberg, J. (2014). Horizontal pivot axis and standardized shell outline: A new method to compare morphology of cardiids (Bivalvia: Cardiidae) exemplified by the genera Cardium, Acanthocardia and Vasticardium. The fossil Cardium hians Brocchi, 1814 replaced by Cardium paleobrocchi nom. nov. Phuket Marine Biological Center Special Publication, 32, 37-52.

Hylleberg, J. & Nateewathana, A. (2013). Marine biodiversity materialized in the PMBC Reference Collection, Phuket, Thailand. Phuket Marine Biological Center. Special Publications, 32, 31-36.

Hylleberg, J. (2013). Phuket Marine Biological Center (PMBC) and Thai-Danish cooperation summarized by a former Danish advisor, with emphasis on the early history. Phuket Marine Biological Center. Special Publications, 32, 13-30.

Hylleberg, J., Poovachiranon, S. & Kittiwatanawong, K. (2013). Community-based habitat monitoring and resource utilization in Chalong Bay, Phuket, Thailand. Phuket Marine Biological Center. Special Publications, 32, 121-127.

Hylleberg, J. & Aungtonya, C. (2014). Biodiversity survey in Chalong Bay and surrounding areas, east coast of Phuket, Thailand. Phuket Marine Biological Center. Special Publications, 32, 81-112.

Hylleberg, J. (2013). Classification and identification of Sipunculans from Thailand, with description of new species and a new subgenus. Phuket Marine Biological Center. Special Publications, 32, 53-82.

Nissen, P. (2014). How do we show molecules and how they move? Biozoom, 3, 20-21. http://www.biokemi.org/biozoom/issues/535/articles/2462

Podgorski, J. E., Green, A. G., Kalscheuer, T., Kinzelbach, W. K. H., Horstmeyer, H., Maurer, H., Rabenstein, L., Doetsch, J., Auken, E., Ngwisanyi, T., Tshoso, G., Jaba, B. C., Ntibinyane, O. & Laletsang, K. (2015). Integrated interpretation of helicopter and ground-based geophysical data recorded within the Okavango Delta, Botswana. Journal of Applied Geophysics, 114, 52-67. https://doi.org/10.1016/j.jappgeo.2014.12.017

Dugan, H. A., Doran, P. T., Tulaczyk, S., Mikucki, J. A., Arcone, S. A., Auken, E., Schamper, C. & Virginia, R. A. (2015). Subsurface imaging reveals a confined aquifer beneath an ice-sealed Antarctic lake. Geophysical Research Letters (Online), 42(1), 96-103. https://doi.org/10.1002/2014GL062431

Fais, A., Aguilar Soto, N., Johnson, M., Pérez-González, C., Miller, P. J. O. & Madsen, P. P. T. (2015). Sperm whale echolocation behaviour reveals a directed prior-based search strategy informed by prey distribution. Behavioral Ecology and Sociobiology, 69(4), 663-674. https://doi.org/10.1007/s00265-015-1877-1

Henriksen, P. S., Lauridsen, S. E., Overgaard, J. & Wang, T. (2015). Food composition influences metabolism, heart rate and organ growth during digestion in Python regius. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 183, 36-44. https://doi.org/10.1016/j.cbpa.2014.12.031

Da Silva, M.-A. O., Bertelsen, M. F., Wang, T., Pedersen, M., Lauridsen, H. & Heegaard, S. (2015). Unilateral microphthalmia or anophthalmia in eight pythons (Pythonidae). Veterinary Ophthalmology, 18(1), 23-29. https://doi.org/10.1111/vop.12198

Nielsen, N., Pedersen, S. B., Sørensen, J. A., Verdezoto, N. & Øllegaard, N. (2015). EcoBears: Augmenting Everyday Appliances with Symbolic and Peripheral Feedback. In S. Nanayakkara & E. Y.-L. Do (Eds.), AH '15 Proceedings of the 6th Augmented Human International Conference. SIGCHI ACM. (pp. 155-156). Association for Computing Machinery. https://doi.org/10.1145/2735711.2735817

Christensen, C. B., Christensen-Dalsgaard, J. & Madsen, P. P. T. (2015). Hearing of the African lungfish (Protopterus annectens) suggests underwater pressure detection and rudimentary aerial hearing in early tetrapods. Journal of Experimental Biology, 218, 381-387. https://doi.org/10.1242/jeb.116012

Tjørnløv, R. S., Kissling, W. D., Barnagaud, J.-Y., Bøcher, P. K. & Høye, T. T. (2015). Oviposition site selection of an endangered butterfly at local spatial scales. Journal of Insect Conservation, 19(2), 377-391. Article Special issue. https://doi.org/10.1007/s10841-014-9747-0

Lund, J., Troeberg, L., Kjeldal, H., Olsen, O. H., Nagase, H., Sørensen, E. S., Stennicke, H. R., Petersen, H. H. & Overgaard, M. T. (2015). Evidence for Restricted Reactivity of ADAMDEC1 with Protein Substrates and Endogenous Inhibitors. Journal of Biological Chemistry, 290, 6620-6629. https://doi.org/10.1074/jbc.M114.601724

Toft, T. (2014). A secure priority queue; or: On secure datastructures from multiparty computation. In H.-S. Lee & D.-G. Han (Eds.), Information Security and Cryptology -- ICISC 2013: 16th International Conference, Seoul, Korea, November 27-29, 2013, Revised Selected Papers (Vol. 8565, pp. 20-33). Springer. https://doi.org/10.1007/978-3-319-12160-4_2

Christensen, S. T. (2015, Jan 23). Surfaces, Digitisations and Reconstructions.

Li, Q., Song, J., Besenbacher, F. & Dong, MD. (2015). Two-dimensional material confined water published as part of the accounts of chemical research special issue "2d nanomaterials beyond Graphene". Accounts of Chemical Research, 48(1), 119-127. https://doi.org/10.1021/ar500306w

Byskov, C. S., Weber, J. M. & Nielsen, S. B. (2015). Gas-phase spectroscopy of singly reduced tris(bipyridine)ruthenium ions, Ru(bipy)3(+). Physical Chemistry Chemical Physics, 17, 5561-5564. https://doi.org/10.1039/c4cp05477f

Jørgensen, P., Milkovic, L., Zarkovic, N., Waeg, G. & Rattan, S. I. S. (2014). Lipid peroxidation-derived 4-hydroxynonenal-modified proteins accumulate in human facial skin fibroblasts during ageing in vitro. Biogerontology, 15(1), 105-110. https://doi.org/10.1007/s10522-013-9482-z

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