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Department of Biology

Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Christensen-Dalsgaard, J. & Thompson, M. J. (2011). Stellar hydrodynamics caught in the act: Asteroseismology with CoRoT and Kepler. Proceedings of the International Astronomical Union, 6(S271), 32-61. https://doi.org/10.1017/S1743921311017443

Campante, T. L., Handberg, R., Mathur, S., Appourchaux, T., Bedding, T. R., Chaplin, W. J., García, R. A., Mosser, B., Benomar, O., Bonanno, A., Corsaro, E., Fletcher, S. T., Gaulme, P., Hekker, S., Karoff, C., Régulo, C., Salabert, D., Verner, G. A., White, T. R. ... Hall, J. R. (2011). Asteroseismology from multi-month Kepler photometry: The evolved Sun-like stars KIC 10273246 and KIC 10920273. Astronomy & Astrophysics (A&A), 534(A6). https://doi.org/10.1051/0004-6361/201116620

Tataru, P. C. & Hobolth, A. (2011). Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains. BMC Bioinformatics, 12(1), 465. https://doi.org/10.1186/1471-2105-12-465

Verner, G. A., Chaplin, W. J., Basu, S., Brown, T. M., Hekker, S., Huber, D., Karoff, C., Mathur, S., Metcalfe, T. S., Mosser, B., Quirion, P.-O., Appourchaux, T., Bedding, T. R., Bruntt, H., Campante, T. L., Elsworth, Y., García, R. A., Handberg, R., Régulo, C. ... Girouard, F. R. (2011). Verification of the Kepler Input Catalog from Asteroseismology of Solar-type Stars. The Astrophysical Journal Letters, 738(2). https://doi.org/10.1088/2041-8205/738/2/L28

Uytterhoeven, K., Moya, A., Grigahcène, A., Guzik, J. A., Gutiérrez-Soto, J., Smalley, B., Handler, G., Balona, L. A., Niemczura, E., Fox Machado, L., Benatti, S., Chapellier, E., Tkachenko, A., Szabó, R., Suárez, J. C., Ripepi, V., Pascual, J., Mathias, P., Martín-Ruíz, S. ... Van Cleve, J. (2011). The Kepler characterization of the variability among A- and F-type stars. I. General overview. Astronomy & Astrophysics (A&A). https://doi.org/10.1051/0004-6361/201117368

Schauer, R., Bienhold, C., Ramette, A. & Harder, J. (2010). Bacterial diversity and biogeography in deep-sea sediments of the South Atlantic Ocean. The Isme Journal, 4, 159-170.

Hobolth, A. & Jensen, J. L. (2011). Summary statistics for endpoint-conditioned continuous-time Markov chains. Journal of Applied Probability, 48(4), 911-924. https://doi.org/10.1239/jap/1324046009

Schauer, R., Røy, H., Augustin, N., Gennerich, H.-H., Peters, M., Wenzhoefer, F., Amann, R. & Meyerdierks, A. (2011). Bacterial sulfur cycle shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field. Environmental Microbiology, 13(10), 2633-48.

Rotaru, A.-E., Schauer, R., Probian, C., Mussmann, M. & Harder, J. (2012). Visualization of candidate division OP3 cocci in limonene degrading methanogenic cultures. Journal of Microbiology and Biotechnology, 22(4), 457-461.

Berg, P., (2011). Vedr.: Ansøgning om EU godkendelse af Dansk Gotlands Russ., No. 773148, 7 p., Apr 08, 2011.

Rasmussen, T. S. & Jensen, H. H. (2011). Chiral pool synthesis of calystegine A3 from 2-deoxyglucose via a Brown allylation. Carbohydrate Research, 346, 2855-2861.

Sørensen, A. C., (2011). Vedr.: Ansøgning om EU godkendelse af Foreningen for Shireavl i Danmark., No. 798350, 6 p., Oct 10, 2011.

Pritchard, J. D., Adams, C. S. & Mølmer, K. (2012). Correlated Photon Emission from Multiatom Rydberg Dark States. Physical Review Letters, 108, 043601. https://doi.org/10.1103/PhysRevLett.108.043601

Drozdová, A., Bojarová, P., Weignerová, L., Henßen, B., Elling, L., Křenek, K., Christensen, H., Jensen, H. H., Pelantová, H., Kuzma, M., Bezouška, K., Krupová, M., Adámek, D., Slámová, K. & Křen, V. (2011). Enzymatic synthesis of dimeric glycomimetic ligands of NK cell activation receptors. Carbohydrate Research, 346, 1599-1609.

Julsgaard, B. & Mølmer, K. (2012). Reflectivity and transmissivity of a cavity coupled to two-level systems: Coherence properties and the influence of phase decay. Physical Review A, 85(1), 013844. https://doi.org/10.1103/PhysRevA.85.013844

Christensen, H., Schjøth-Eskensen, C., Jensen, M., Sinning, S. & Jensen, H. H. (2011). Synthesis of 3,7 disubstituted Imipramine Analogues via Palladium Catalysed Amination/Cyclisation and Evaluation of Their Inhibition of Monoamine Transporters. Chemistry - A European Journal, 17, 10618-10627.

Toffoli, D., Sparta, M. & Christiansen, O. (2011). Vibrational spectroscopy of hydrogen-bonded systems: Six-dimensional simulation of the IR spectrum of F-(H₂O) complex. Chemical Physics Letters, 510(1-3), 36–41.

Toffoli, D., Sparta, M. & Christiansen, O. (2011). Accurate multimode vibrational calculations using a b-spline basis: theory, tests and application to dioxirane and diazirinone. Molecular Physics, 109, 673–685.

Seidler, P., Sparta, M. & Christiansen, O. (2011). Vibrational coupled cluster response theory: A general implementation. Journal of Chemical Physics, 134, 054119–15.

Lloyd, K., Schreiber, L., Petersen, D. G., Richter, M., Kjeldsen, K. U., Lever, M., Kleindienst, S., Schramm, A. & Jørgensen, B. B. (2012). Single cell genomics of uncultured subsurface archaea. Abstract from Goldschmidt, Montreal, Canada.

Bisgaard, C., Enghild, J. J. & Wiborg, O. (2010). Comparative proteomics in the chronic mild stress model of depression - a search for biomarkers of depression in the hippocampal granular cell layer. Poster session presented at San Diego, USA: Society for Neuroscience Annual Meeting 2010, San Diego, California, United States.

Rizzo, A., Coriani, S. & Ruud, K. (2012). Response Function Theory Computational Approaches to Linear and Nonlinear Optical Spectroscopy. In Computational Strategies for Spectroscopy. From Small Molecules to Nanosystems. Editor: V. Barone (pp. 77-135). John Wiley & Sons Ltd.

Bisgaard, C., Enghild, J. J. & Wiborg, O. (2009). Comparative proteomics in the chronic mild stress model of depression - a search for biomarkers of depression in hippocampal subregions. Poster session presented at Scandinavian College of Neuro-psychopharmacology (SCNP), 50th annual meeting, København, Denmark.

Strømsheim, M., Kumar, N., Coriani, S., Sagvolden, E., Teale, A. & Helgaker, T. (2011). Dispersion interactions in density-functional theory: an adiabatic connection analysis. Journal of Chemical Physics, 135, 194109 (1-16) .

Teale, A. M., Coriani, S. & Helgaker, T. (2010). Range-dependent adiabatic connections. Journal of Chemical Physics, 132, 164112.

Teale, A. M., Coriani, S. & Helgaker, T. (2010). Accurate calculation and modeling of the adiabatic connection in density functional theory. Journal of Chemical Physics, 132, 164115 .

Tamo, F. O. W., Buhr, H., Motapon, O., Altevogt, S., Andrianarijaona, V. M., Grieser, M., Lammich, L., Lestinsky, M., Motsch, M., Nevo, I., Novotny, S., Orlov, D. A., Pedersen, H. B., Schwalm, D., Sprenger, F., Urbain, X., Weigel, U., Wolf, A. & Schneider, I. F. (2011). Assignment of resonances in dissociative recombination of HD⁺ ions: High-resolution measurements compared with accurate computations. Physical Review A, 84(2), 022710. https://doi.org/10.1103/PhysRevA.84.022710

Dorosz, J., Volinsky, R., Bazar, E., Kolusheva, S. & Jelinek, R. (2009). Phospholipid-induced fibrillation of a prion amyloidogenic determinant at the air/water interface. Langmuir, 25(21), 12501-6. https://doi.org/10.1021/la901750v

Bazar, E., Sheynis, T., Dorosz, J. & Jelinek, R. (2011). Heparin inhibits membrane interactions and lipid-induced fibrillation of a prion amyloidogenic determinant. ChemBioChem, 12(5), 761-7. https://doi.org/10.1002/cbic.201000486

Rohdjess, H., Emhofer, S., Fischer, P., Lazarev, V., Leghissa, M., Steiner, B., Tanke, E., Urschütz, P., Møller, S. P., Andersen, T., Baurichter, A., Budde, M., Bødker, F., Franczak, B., Jensen, M., Pedersen, C. G., Sørensen, T. B., Weber, S. V. & Zangenberg, N. (2009). Status of the Siemens particle therapy accelerators. In Proceedings for PAC09 (pp. 1321-1323) http://accelconf.web.cern.ch/AccelConf/PAC2009/papers/tu6pfp013.pdf

Ghodke, S., Nielsen, S. B., Christiansen, G., Hjuler, H. A., Flink, J., Otzen, D. & Nielsen, S. B. (2012). Mapping out the multistage fibrillation of glucagon. FEBS journal, 279(5), 752-765. https://doi.org/10.1111/j.1742-4658.2011.08465.x

Dueholm, M. S., Nielsen, S. B., Hein, K. L., Nissen, P., Chapman, M., Christiansen, G., Nielsen, P. H. & Otzen, D. E. (2011). Fibrillation of the major curli subunit CsgA under a wide range of conditions implies a robust design of aggregation. Biochemistry, 50(39), 8281-90. https://doi.org/10.1021/bi200967c

Nøjgaard, J. K., Nguyen, Q., Glasius, M. & Sørensen, L. L. (2012). Nucleation and Aitken mode atmospheric particles in relation to O3 and NOX at semirural background in Denmark. Atmospheric Environment, 49, 275-283. http://dx.doi.org/10.1016/j.atmosenv.2011.11.040

Wangpraseurt, D., Weber, M., Røy, H., Polerecky, L., DeBeer, D., Suharsono & Nugues, M. (2012). In Situ Oxygen Dynamics in Coral-Algal Interactions. PLoS One, 7/2(e31192), 1-8. https://doi.org/10.1371

Rasmussen, C. & Olesen, J. M. (2011). Effects of climate change on structure and dynamics of an ecological network. In L. M. Jensen & M. Rasch (Eds.), Zackenberg Ecological Research Operations, 16th Annual Report, 2010 (Vol. 16, pp. 87-88)

Alves, M.-H., Jensen, B. E. B., Smith, A. A. A. & Zelikin, A. N. (2011). Poly(vinyl alcohol) physical hydrogels : New vista on a long serving biomaterial. Macromolecular Bioscience, 11, 1293-1313.

Chandrawati, R., Chong, S.-F., Zelikin, A. N., Rigau, L. H., Stadler, B. & Caruso, F. (2011). Degradation of liposomal subcompartments in PEGylated capsosomes. Soft Matter, 8, 9638-9646.

Becker, A. L., Orlotti, N. I., Folini, M., Cavalieri, F., Zelikin, A. N., Johnston, A. P. R. J., Zaffaroni, N. & Caruso, F. (2011). Redox-Active Polymer Microcapsules for the Delivery of a Survivin-Specific siRNA in Prostate Cancer Cells. ACS Nano, 5, 1335-1344.

Chong, S.-F., Zelikin, A. N., Lee, J. H. & Caruso, F. (2011). Tuning the Permeability of Polymer Hydrogel Capsules: An Investigation of Cross-Linking Density, Membrane Thickness, and Cross-Linkers. Langmuir, 27, 1724-1730.

Tuni, C., Goodacre, S., Bechsgaard, J. S. & Bilde, T. (2012). Moderate multiple parentage and low genetic variation reduces the potential for genetic incompatibility avoidance despite high risk of inbreeding. PLoS One, 7(1), e29636. https://doi.org/10.1371/journal.pone.0029636

Han, A., Dufva, M., Belleville, E. & Christensen, C. B. V. (2003). Detection of analyte binding to microarrays using gold nanoparticle labels and a desktop scanner. Lab on a Chip, 3(4), 329-32. https://doi.org/10.1039/b310814g

Chen, X., Lever, M. & Jørgensen, B. B. (2011). Community zonation of methane-cycling Archaea in Subsurface Sediments of Aarhus Bay, Denmark.

Han, A., Creus, M., Schürmann, G., Linder, V., Ward, T. R., de Rooij, N. F. & Staufer, U. (2008). Label-free detection of single protein molecules and protein-protein interactions using synthetic nanopores. Analytical Chemistry, 80(12), 4651-8. https://doi.org/10.1021/ac7025207

Han, A., Mondin, G., Hegelbach, N. G., de Rooij, N. F. & Staufer, U. (2006). Filling kinetics of liquids in nanochannels as narrow as 27 nm by capillary force. Journal of Colloid and Interface Science, 293(1), 151-7. https://doi.org/10.1016/j.jcis.2005.06.037

Han, A., Vlassarev, D., Wang, J., Golovchenko, J. A. & Branton, D. (2011). Ice lithography for nanodevices. Nano Letters, 10(12), 5056-5059. https://doi.org/10.1021/nl1032815

Han, A., Golovchenko, J. A., Chervinsky, J. & Branton, D. (2012). An ice lithography instrument. Review of Scientific Instruments, 82(6). https://doi.org/10.1063/1.3601005

Han, A., Kuan, A., Golovchenko, J. & Branton, D. (2012). Nanopatterning on Nonplanar and Fragile Substrates with Ice Resists. Nano Letters. https://doi.org/10.1021/nl204198w

Han, A., De Rooij, N. F. & Staufer, U. (2006). Design and fabrication of nanofluidic devices by surface micromachining. Nanotechnology, 17(10), 2498-2503. https://doi.org/10.1088/0957-4484/17/10/010

Han, A., Schürmann, G., Mondin, G., Bitterli, R. A., Hegelbach, N. G., De Rooij, N. F. & Staufer, U. (2006). Sensing protein molecules using nanofabricated pores. Applied Physics Letters, 88(9). https://doi.org/10.1063/1.2180868

Han, A., Steinhauer, C., Kaas, H. & Garde, K. (2008). QUANTIFICATION OF ANALYTE MOLECULES USING MULTIPLE REFERENCE MOLECULES AND CORRELATION FUNCTIONS. (Patent No. WO2008116471). http://www.wipo.int/patentscope/search/en/WO2008116471

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Anne Kirstine Mehlsen