Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Dong, M., Husale, S. & Sahin, O. (2009). Determination of protein structural flexibility by microsecond force spectroscopy. Nature Nanotechnology, 4(8), 514-7. https://doi.org/10.1038/nnano.2009.156

Nevo, I., Kapishnikov, S., Birman, A., Dong, M., Cohen, S. R., Kjaer, K., Besenbacher, F., Stapelfeldt, H., Seideman, T. & Leiserowitz, L. (2009). Laser-induced aligned self-assembly on water surfaces. Journal of Chemical Physics, 130(14), 144704. https://doi.org/10.1063/1.3108540

Andersen, E. S., Dong, M., Nielsen, M. M., Jahn, K., Subramani, R., Mamdouh, W., Golas, M. M., Sander, B., Stark, H., Oliveira, C. L. P., Pedersen, J. S., Birkedal, V., Besenbacher, F., Gothelf, K. V. & Kjems, J. (2009). Self-assembly of a nanoscale DNA box with a controllable lid. Nature, 459(7243), 73-6. https://doi.org/10.1038/nature07971

Malmos, K., Dong, M., Pillai, S., Kingshott, P., Besenbacher, F., Pedersen, S. U. & Daasbjerg, K. (2009). Using a hydrazone-protected benzenediazonium salt to introduce a near-monolayer of benzaldehyde on glassy carbon surfaces. Journal of the American Chemical Society, 131(13), 4928-36. https://doi.org/10.1021/ja809816x

Andersen, E. S., Dong, M., Nielsen, M. M., Jahn, K., Lind-Thomsen, A., Mamdouh, W., Gothelf, K. V., Besenbacher, F. & Kjems, J. (2008). DNA origami design of dolphin-shaped structures with flexible tails. A C S Nano, 2(6), 1213-8. https://doi.org/10.1021/nn800215j

Yan, K., Xue, Q., Xia, D., Chen, H., Xie, J. & Dong, M. (2009). The core/shell composite nanowires produced by self-scrolling carbon nanotubes onto copper nanowires. A C S Nano, 3(8), 2235-40. https://doi.org/10.1021/nn9005818

Mamdouh, W., Kelly, R. E. A., Dong, M., Kantorovich, L. N. & Besenbacher, F. (2007). Two-dimensional supramolecular nanopatterns formed by the coadsorption of guanine and uracil at the liquid/solid interface. Journal of the American Chemical Society, 130(2), 695-702. https://doi.org/10.1021/ja076832f

Dong, M., Xu, S., Oliveira, C. L. P., Pedersen, J. S., Thiel, S., Besenbacher, F. & Vorup-Jensen, T. (2007). Conformational changes in mannan-binding lectin bound to ligand surfaces. Journal of Immunology, 178(5), 3016-22.

Xu, W., Dong, M., Gersen, H., Rauls, E., Vázquez-Campos, S., Crego-Calama, M., Reinhoudt, D. N., Stensgaard, I., Laegsgaard, E., Linderoth, T. R. & Besenbacher, F. (2007). Cyanuric acid and melamine on Au111: structure and energetics of hydrogen-bonded networks. Small, 3(5), 854-8. https://doi.org/10.1002/smll.200600407

Howard, K. A., Dong, M., Oupicky, D., Bisht, H. S., Buss, C., Besenbacher, F. & Kjems, J. (2007). Nanocarrier stimuli-activated gene delivery. Small, 3(1), 54-7. https://doi.org/10.1002/smll.200600328

Mamdouh, W., Dong, M., Xu, S., Rauls, E. & Besenbacher, F. (2006). Supramolecular nanopatterns self-assembled by adenine-thymine quartets at the liquid/solid interface. Journal of the American Chemical Society, 128(40), 13305-11. https://doi.org/10.1021/ja064988u

Li, Y., Li, Y., Yao, Y., Liu, B., Chen, M., Song, X. & Dong, M. (2009). Two-dimensional scaffold layer formations on a solid surface through xanthan polysaccharide: temperature effect. Colloids and Surfaces B: Biointerfaces, 74(1), 136-9. https://doi.org/10.1016/j.colsurfb.2009.07.007

Pallesen, J., Dong, M., Besenbacher, F. & Kjems, J. (2009). Structure of the HIV-1 Rev response element alone and in complex with regulator of virion (Rev) studied by atomic force microscopy. FEBS journal, 276(15), 4223-32. https://doi.org/10.1111/j.1742-4658.2009.07130.x

Xu, W., Dong, M., Gersen, H., Rauls, E., Vázquez-Campos, S., Crego-Calama, M., Reinhoudt, D. N., Laegsgaard, E., Stensgaard, I., Linderoth, T. R. & Besenbacher, F. (2008). Influence of alkyl side chains on hydrogen-bonded molecular surface nanostructures. Small, 4(10), 1620-3. https://doi.org/10.1002/smll.200800377

Rahbek, U. L., Howard, K. A., Oupicky, D., Manickam, D. S., Dong, M., Nielsen, A. F., Hansen, T. B., Besenbacher, F. & Kjems, J. (2008). Intracellular siRNA and precursor miRNA trafficking using bioresponsive copolypeptides. Journal of Gene Medicine, 10(1), 81-93. https://doi.org/10.1002/jgm.1120

Mamdouh, W., Dong, M., Kelly, R. E. A., Kantorovich, L. N. & Besenbacher, F. (2007). Coexistence of homochiral and heterochiral adenine domains at the liquid/solid interface. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 111(42), 12048-52. https://doi.org/10.1021/jp076623h

Vázquez-Campos, S., Péter, M., Dong, M., Xu, S., Xu, W., Gersen, H., Linderoth, T. R., Schönherr, H., Besenbacher, F., Crego-Calama, M. & Reinhoudt, D. N. (2007). Self-organization of gold-containing hydrogen-bonded rosette assemblies on graphite surface. Langmuir, 23(20), 10294-8. https://doi.org/10.1021/la701330v

Xu, W., Dong, M., Vázquez-Campos, S., Gersen, H., Laegsgaard, E., Stensgaard, I., Crego-Calama, M., Reinhoudt, D. N., Linderoth, T. R. & Besenbacher, F. (2007). Enhanced stability of large molecules vacuum-sublimated onto Au(111) achieved by incorporation of coordinated Au-atoms. Journal of the American Chemical Society, 129(35), 10624-5. https://doi.org/10.1021/ja0725448

Hovgaard, M. B., Dong, M., Otzen, D. E. & Besenbacher, F. (2007). Quartz crystal microbalance studies of multilayer glucagon fibrillation at the solid-liquid interface. Biophysical Journal, 93(6), 2162-9. https://doi.org/10.1529/biophysj.107.109686

Xu, S., Dong, M., Liu, X., Howard, K. A., Kjems, J. & Besenbacher, F. (2007). Direct force measurements between siRNA and chitosan molecules using force spectroscopy. Biophysical Journal, 93(3), 952-9. https://doi.org/10.1529/biophysj.106.093229

Dong, M. D., Hovgaard, M. B., Mamdouh, W., Xu, S. L., Otzen, D. E. & Besenbacher, F. (2008). AFM-based force spectroscopy measurements of mature amyloid fibrils of the peptide glucagon: Nanotechnology. Nanotechnology, 19(38).

Dong, M. D., Howard, K. A., Oupicky, D., Bisht, H., Kjems, J. & Besenbacher, F. (2007). Visualization of thermally activated nanocarriers using in situ atomic force microscopy: Nanotechnology. Nanotechnology, 18(18), Article 185501. https://doi.org/10.1088/0957-4484/18/18/185501

Xu, W., Dong, M. D., Gersen, H., Vazquez-Campos, S., Bouju, X., Laegsgaard, E., Stensgaard, I., Crego-Calama, M., Reinhoudt, D. N., Linderoth, T. R. & Besenbacher, F. (2009). Exploring the Transferability of Large Supramolecular Assemblies to the Vacuum-Solid Interface. Nano Research, 2(7).

Lv, Y. A., Cui, Y. H., Li, X. N., Song, X. Z., Wang, J. G. & Dong, M. D. (2010). The point-defect of carbon nanotubes anchoring Au nanoparticles. Physica E-Low-Dimensional Systems & Nanostructures, 42(5).

Wang, J. G., Lv, Y. A., Li, X. N. & Dong, M. D. (2009). Point-Defect Mediated Bonding of Pt Clusters on (5,5) Carbon Nanotubes. Journal of Physical Chemistry Part C: Nanomaterials and Interfaces, 113(3).

Xie, J., Xue, Q. Z., Yan, K. Y., Chen, H. J., Xia, D. & Dong, M. D. (2009). Chemical Modification: an Effective Way of Avoiding the Collapse of SWNTs on Al Surface Revealed by Molecular Dynamics Simulations. Journal of Physical Chemistry Part C: Nanomaterials and Interfaces, 113(33).

Grønbæk, K. & Trigg, R. H. (1994). Design issues for a Dexter-based hypermedia system. Association for Computing Machinery. Communications, 37(2), 40-49. https://doi.org/10.1145/175235.175238

Vestergaard, A. L., Knudsen, U. B., Munk, T., Rosbach, H., Bialasiewicz, S., Sloots, T., Martensen, P. M. & Antonsson, A. (2010). Low prevalence of DNA viruses in the human endometrium and endometriosis. Archives of Virology, 155, 695-703. https://doi.org/10.1007/s00705-010-0643-y

Wiklund, E. D. (2010). The miR-200 family and miR-205 are repressed by Twist1 and concurrently silenced and DNA hypermethylated in invasive bladder cancer. Poster session presented at Keystone Symposia - RNA Silencing: Mechanism, Biology and Application, Keystone, United States.

Grønbæk, K. (1989). Extending the Boundaries of Prototyping - Towards Cooperative Prototyping. In S. Bødker (Ed.), Proceedings of the 12th IRIS - Part 1 (pp. 219-238). Department of Computer Science, Aarhus University.

Aamand, R., Skewes, J., Møller, A., Fago, A. & Roepstorff, A. (2010). Dilating Thoughts: Vessel and Blood-derived NO in Human Brain Signal Processing. Nitric Oxide: Biology and Chemistry, S68.

Ørbæk, P., Mogensen, P. H. & Grønbæk, K. (2001). Interaction Techniques for Spatial Organization of Digital and Physical materials - the Topos Approach. In O. W. Bertelsen (Ed.), Proceedings of the First Dansih Human-Computer Interaction Research Symposium (pp. 51-53). Department of Computer Science, Aarhus University.

Sveegaard, S., Teilmann, J., Tougaard, J., Dietz, R., Mouritsen, K. N., Desportes, G. & Siebert, U. (2011). High-density areas for harbor porpoises (Phocoena phocoena) identified by satellite tracking. Marine Mammal Science, 27(1), 230-246. https://doi.org/10.1111/j.1748-7692.2010.00379.x

Ngo, T. T. D., Konnerup, D., Schierup, H.-H., Nguyen, H. C., Le, A. T. & Brix, H. (2010). Kinetics of pollutant removal from domestic wastewater in a tropical horizontal subsurface flow constructed wetland system: Effects of hydraulic loading rate. Ecological Engineering, 36(4), 527-535. https://doi.org/10.1016/j.ecoleng.2009.11.022

Hannestad, S., Haugbølle, T., Jarnhus, P. & Sloth, M. S. (2010). Non-gaussianity from axion monodromy inflation. Journal of Cosmology and Astroparticle Physics, 06(2010)001. https://doi.org/10.1088/1475-7516/2010/06/001

Bjælde, O. E. & Hannestad, S. (2010). Neutrino dark energy with more than one neutrino species. Physical Review D, 81(6), 063001. https://doi.org/10.1103/PhysRevD.81.063001

Hannestad, S. & Brandbyge, J. (2010). The Cosmic Neutrino Background anisotropy — linear theory. Journal of Cosmology and Astroparticle Physics, 03(2010)020. https://doi.org/10.1088/1475-7516/2010/03/020

Hamann, J., Shafieloo, A. & Souradeep, T. (2010). Features in the primordial power spectrum? A frequentist analysis. Journal of Cosmology and Astroparticle Physics, 04(2010)010. https://doi.org/10.1088/1475-7516/2010/04/010

Finelli, F., Hamann, J., Leach, S. M. & Lesgourgues, J. (2010). Single-field inflation constraints from CMB and SDSS data. Journal of Cosmology and Astroparticle Physics, 04(2010)011. https://doi.org/10.1088/1475-7516/2010/04/011

Christensen, H. B., Hansen, K. M. & Lindstrøm, B. (2010). aSQA: Architectural Software Quality Assurance: Software Architecture at Work - Technical Report # 5: . Department of Computer Science, Aarhus University.

Baattrup-Pedersen, A., Ejrnæs, R., Nygaard, B. & Dybkjær, J. B. (2010). Biodiversitet i ådale - status over naturen. Vand og Jord, 17(2), 73-76.

Nielsen, J., le Quach, P., Emborg, C., Foldager, L. & Correll, C. U. (2010). 10-Year trends in the treatment and outcomes of patients with first-episode schizophrenia. Acta Psychiatrica Scandinavica, 122(5), 356-66. https://doi.org/10.1111/j.1600-0447.2010.01576.x

Bergmann, U. C., Axelsson, L., Bennett, J. R. J., Borge, M. J. G., Catherall, R., Drumm, P. V., Fedoseyev, V. N., Forssén, C., Fraile, L. M., Fynbo, H. O. U., Georg, U., Giles, T., Grévy, S., Hornshøj, P., Jonson, B., Jonson, O. C., Köster, U., Lettry, J., Markenroth, K. ... Wilhelmson Rolander, K. (2002). Light exotic isotopes: recent beam developments and physics applications. Nuclear Physics A, 363C-368C.

Langanke, K. & Martinez-Pinedo, G. (2002). Weak interaction, giant resonances and nuclear astrophysics. In Proceedings of the International Symposium on Electromagnetic Interactions in Nuclear and Hadron Physics (pp. 217-226). WSEAS Press.

Sahana, G., Mailund, T., Lund, M. S. & Guldbrandtsen, B. (2010). A New Powerful Method for Genome-wide Association Mapping Using Local Genealogies in a Mixed Model. In Abstracts (pp. 109). Gesellschaft für Tierzuchtwissenschaften e. V..

Schulman, N. F., Sahana, G., Vilkki, J., Guldbrandtsen, B. & Lund, M. S. (2010). Genome-wide scan for fertility traits in cattle using single marker association and a genealogy based method. In Abstracts (pp. 74). Gesellschaft für Tierzuchtwissenschaften e. V..

Guldbrandtsen, B., Höglund, J. K., Lund, M. S. & Sahana, G. (2010). Analyzing Follow-up Studies to Genome Wide Association Studies. In Abstracts (pp. 112). Gesellschaft für Tierzuchtwissenschaften e. V..

Hansen, K. M. (2003). Agile Environments: Some Pattterns for Agile Software Development Facilitation. In P. Hrubry & K. E. Sørensen (Eds.), Proceedings of the First Nordic Conference on Pattern Languages of Programs, 2002 (pp. 259-270). Microsoft Business Solutions ApS. http://www.daimi.au.dk/~marius/documents/hansen2002vikingplop.pdf

Johansson, H. T., Aksyutina, Y., Aumann, T., Boretzky, K., Borge, M. J. G., Chatillon, A., Chulkov, L. V., Cortina-Gil, D., Datta Pramanik, U., Emling, H., Forssén, C., Fynbo, H. O. U., Geissel, H., Ickert, G., Jonson, B., Kulessa, R., Langer, C., Lantz, M., LeBleis, T. ... Zhukov, M. V. (2010). The unbound isotopes^9,10 He. Nuclear Physics A, 842(1-4), 15-32. https://doi.org/10.1016/j.nuclphysa.2010.04.006

Damm, C. H., Hansen, K. M., Thomsen, M. & Tyrsted, M. (2000). Tool Integration: Experiences and Issues in Using XMI and Component Technology. In Proceedings of the Technology of Object-Oriented Languages and Systems Conference (pp. 94-107). IEEE Computer Society Press. https://doi.org/10.1109/TOOLS.2000.848754

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