Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Bertl, J., Guo, Q., Juul, M., Besenbacher, S., Nielsen, M. M., Hornshøj, H., Pedersen, J. S. & Hobolth, A. (2018). A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data. BMC Bioinformatics , 19(147), Article 147. https://doi.org/10.1186/s12859-018-2141-2

Juul, M., Madsen, T., Guo, Q., Bertl, J., Hobolth, A., Kellis, M. & Pedersen, J. S. (2019). ncdDetect2: Improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation. Bioinformatics, 35(2), 189-199. https://doi.org/10.1093/bioinformatics/bty511

Hobolth, A., Guo, Q., Kousholt, A. & Jensen, J. L. (2020). A Unifying Framework and Comparison of Algorithms for Non-negative Matrix Factorisation. International Statistical Review, 88(1), 29-53. https://doi.org/10.1111/insr.12331

Fender, A. & Müller, J. (2018). Velt: A Framework for Multi RGB-D Camera Systems. In Proceedings of the 2018 ACM International Conference on Interactive Surfaces and Spaces (pp. 73-83). Association for Computing Machinery. https://doi.org/10.1145/3279778.3279794

Bjørk, A. A., Larsen, N. K., Olsen, J., Goldsack, A. E., Kjeldsen, K. K., Morlighem, M., Andresen, C. S., Rasmussen, P., Oxfeldt, G. & Kjær, K. H. (2018). Holocene history of the Helheim Glacier, southeast Greenland. Quaternary Science Reviews, 193, 145-158. https://doi.org/10.1016/j.quascirev.2018.06.018

Liu, H., Sandal, N., Andersen, K. R., James, E. K., Stougaard, J., Kelly, S. & Kawaharada, Y. (2018). A genetic screen for plant mutants with altered nodulation phenotypes in response to rhizobial glycan mutants. New Phytologist, 220(2), 526-538. https://doi.org/10.1111/nph.15293

Heymann, M. (2019). The climate change dilemma: big science, the globalizing of climate and the loss of the human scale. Regional Environmental Change, 19(6), 1-12. https://doi.org/10.1007/s10113-018-1373-z

Rattan, S. I. S. (2018). Biogerontology: research status, challenges and opportunities. Acta bio-medica : Atenei Parmensis, 89(2), 291-301. https://doi.org/10.23750/abm.v89i2.7403

Dahlström, H. S. S., Poulsen, B. & Olsen, J. (2018). From a port for traders to a town of merchants: exploring the topography, activities and dynamics of early medieval Copenhagen. Danish Journal of Archaeology, 7 (2018)(1), 69-116.

Bleem, A., Christiansen, G., Madsen, D. J., Maric, H., Strømgaard, K., Bryers, J. D., Daggett, V., Meyer, R. L. & Otzen, D. E. (2018). Protein Engineering Reveals Mechanisms of Functional Amyloid Formation in Pseudomonas aeruginosa Biofilms. Journal of Molecular Biology, 430(20), 3751-3763. https://doi.org/10.1016/j.jmb.2018.06.043

Britz, D. H. & Strutwolf, J. (2018). Use of the Saul'yev method for the digital simulation of chronoamperometry at the disk electrode, in the presence of homogeneous chemical reactions. Electrochimica Acta, 283(9), 300-305. https://doi.org/10.1016/j.electacta.2018.06.146

Gadegaard, S. L., Klose, A. & Nielsen, L. R. (2017, Mar 7). A solver for the single source capacitated facility location problem. GitHub. https://github.com/SuneGadegaard/SSCFLPsolver

He, F., Bhoobalan-Chitty, Y., Van, L. B., Kjeldsen, A. L., Dedola, M., Makarova, K. S., Koonin, E. V., Brodersen, D. E. & Peng, X. (2018). Publisher Correction: Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity. Nature Microbiology. https://doi.org/10.1038/s41564-018-0184-9

Torvund-Jensen, J., Steengaard, J., Askebjerg, L. B., Kjaer-Sorensen, K. & Laursen, L. S. (2018). The 3’UTRs of myelin basic protein mRNAs regulate transport, local translation and sensitivity to neuronal activity in zebrafish. Frontiers in Molecular Neuroscience, 11, Article 185. https://doi.org/10.3389/fnmol.2018.00185

Dang Diem Tuong, Borowiec, B., Clifford, A. M., Filogonio, R., Somo, D., Do Thi Thanh Huong, Nguyen Thanh Phuong, Wang, T., Bayley, M. & Milsom, W. K. (2018). Ventilatory responses of the clown knifefish, Chitala ornata, to hypercarbia and hypercapnia. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 188(4), 581-589. https://doi.org/10.1007/s00360-018-1150-9

Eychenne, J., Ortega, N., Balslev, H., Muscarella, R. & Stauffer, F. W. (2018). Taxonomic revision, distribution and ecology of Wendlandiella (Arecaceae: Arecoideae: Chamaedoreeae). Webbia, 73(2), 179-190. https://doi.org/10.1080/00837792.2018.1478378

Petersen, S. V., Valnickova, Z., Oury, T. D., Crapo, J. D., Chr, N. & Enghild, J. J. (2007). The subunit composition of human extracellular superoxide dismutase (EC-SOD) regulate enzymatic activity. BMC Biochemistry, 8, Article 19. https://doi.org/10.1186/1471-2091-8-19

Nielsen, K. H. (2018). Konspirationsteorier giver grobund for ubegrundet tvivl. Kristeligt Dagblad, 9.

Nielsen, K. H. (2018). Hacker. Weekendavisen, Sektion 4 (Ideer), 10.

Nielsen, K. H. (2018). Biodiversitet. Weekendavisen, Sektion 4 (Ideer), 10.

Christensen, H. B. (2018). Chained Property Files (CPF). Computer programme, Bitbucket repository. https://bitbucket.org/henrikbaerbak/cpf/src/master/

Quesada, C. M. D. & Krause-Jensen, D. (2018). Seawater carbonate chemistry and oxygen concentrations in the Greenland tidal pools. PANGAEA. Supplement to: Duarte, CM; Krause-Jensen, D (2018): Greenland Tidal Pools as Hot Spots for Ecosystem Metabolism and Calcification. Estuaries and Coasts, 41(5), 1314-1321, https://doi.org/10.1007/s12237-018-0368-9. Dataset https://doi.org/10.1594/PANGAEA.890719

Głazowska, S., Baldwin, L., Mravec, J., Bukh, C., Hansen, T. H., Jensen, M. M., Fangel, J. U., Willats, W. G. T., Glasius, M., Felby, C. & Schjoerring, J. K. (2018). The impact of silicon on cell wall composition and enzymatic saccharification of Brachypodium distachyon. Biotechnology for Biofuels, 11(1), Article 171. https://doi.org/10.1186/s13068-018-1166-0

Nielsen, M. S. & Pedersen, J. (2019). Limit theorems for quadratic forms and related quantities of discretely sampled continuous-time moving averages. ESAIM: Probability & Statistics, 23, 803-822. https://doi.org/10.1051/ps/2019008

Boertmann, D. (Ed.), Aastrup, P., Asmund, G., Bach, L., Fritt-Rasmussen, J., Gustavson, K., Hansen, V., Johansen, P., Lund, H., Mosbech, A., Riget, F. F., Søndergaard, J., Tougaard, J. & Wegeberg, S. (2018). Miljø og råstoffer i Grønland. Aarhus Universitetsforlag. Miljøbiblioteket Vol. 5

Asmus, A., Chmura, H., Høye, T. T., Krause, J., Sweet, S., Perez, J., Boelman, N., Wingfield, J. & Gough, L. (2018). Shrub shading moderates the effects of weather on arthropod activity in arctic tundra. Ecological Entomology, 43(5), 647-655. https://doi.org/10.1111/een.12644

Hansen, T. B. (2018). Detecting Agotrons in Ago CLIPseq Data. In U. Ørum (Ed.), Methods in Molecular Biology: Methods in Molecular Biology (Vol. 1823, pp. 221-232). Springer. https://doi.org/10.1007/978-1-4939-8624-8_17

Chatterley, A. S., Karamatskos, E. T., Schouder, C., Christiansen, L., Vestergaard Jørgensen, A., Mullins, T., Küpper, J. & Stapelfeldt, H. (2018). Communication: Switched wave packets with spectrally truncated chirped pulses. Journal of Chemical Physics, 148(22), Article 221105. https://doi.org/10.1063/1.5028359

Huang, R. J., Cao, J., Chen, Y., Yang, L., Shen, J., You, Q., Wang, K., Lin, C., Xu, W., Gao, B., Li, Y., Chen, Q., Hoffmann, T., O'Dowd, C. D., Bilde, M. & Glasius, M. (2018). Organosulfates in atmospheric aerosol: Synthesis and quantitative analysis of PM2.5 from Xi'an, northwestern China. Atmospheric Measurement Techniques, 11(6), 3447-3456. https://doi.org/10.5194/amt-11-3447-2018

Nsamba, B., Campante, T. L., Monteiro, M. J. P. F. G., Cunha, M. S., Rendle, B. M., Reese, D. R. & Verma, K. (2018). Asteroseismic modelling of solar-type stars: internal systematics from input physics and surface correction methods. Monthly Notices of the Royal Astronomical Society, 477(4), 5052-5063. https://doi.org/10.1093/mnras/sty948

White, T. R., Huber, D., Mann, A. W., Casagrande, L., Grunblatt, S. K., Justesen, A. B., Aguirre, V. S., Bedding, T. R., Ireland, M. J., Schaefer, G. H. & Tuthill, P. G. (2018). Interferometric diameters of five evolved intermediate-mass planet-hosting stars measured with PAVO at the CHARA Array. Monthly Notices of the Royal Astronomical Society, 477(4), 4403-4413. https://doi.org/10.1093/mnras/sty898

Paparo, M., Kollath, Z., Shobbrook, R. R., Matthews, J. M., Antoci, V., Benko, J. M., Park, N. .-K., Mirtorabi, M. T., Luedeke, K., Kusakin, A., Bognar, Z., Sodor, A., Garcia-Hernandez, A., Pena, J. H., Kuschnig, R., Moffat, A. F. J., Rowe, J., Rucinski, S. M., Sasselov, D. & Weiss, W. W. (2018). The Delta Scuti star 38 Eri from the ground and from space. Monthly Notices of the Royal Astronomical Society, 477(4), 4362-4379. https://doi.org/10.1093/mnras/sty885

Mishra, P. K., Bettaque, V., Vendrell, O., Santra, R. & Welsch, R. (2018). Prospects of Using High-Intensity THz Pulses To Induce Ultrafast Temperature-Jumps in Liquid Water. The Journal of Physical Chemistry A, 122(23), 5211-5222. https://doi.org/10.1021/acs.jpca.8b00828

Solaro, C., Meyer, S., Fisher, K., Depalatis, M. & Drewsen, M. (2018). Direct Frequency-Comb-Driven Raman Transitions in the Terahertz Range. Physical Review Letters, 120(25), Article 253601. https://doi.org/10.1103/PhysRevLett.120.253601

Bariknecht, R. E., Foerster, A. & Zinner, N. T. (2018). Emergence of junction dynamics in a strongly interacting Bose mixture. New Journal of Physics, 20(6), Article 063014. https://doi.org/10.1088/1367-2630/aac718

Roesgaard, S., Meng, L., Tidemand-Lichtenberg, P., Dam, J. S., Rodrig, P. J., Pedersen, C. & Julsgaard, B. (2018). Time-resolved infrared photoluminescence spectroscopy using parametric three-wave mixing with angle-tuned phase matching. Optics Letters, 43(12), 3001-3004. https://doi.org/10.1364/OL.43.003001

Tempestini, A., Rysgaard, S. & Dufresne, F. (2018). Species identification and connectivity of marine amphipods in Canada's three oceans. PLOS ONE, 13(5), Article 0197174. https://doi.org/10.1371/journal.pone.0197174

Camacho Guardian, A., Ardila, L., Pohl, T. & Bruun, G. (2018). Bipolarons in a Bose-Einstein Condensate. Physical Review Letters, 121(1), 1-6. Article 013401. https://doi.org/10.1103/PhysRevLett.121.013401

Attard, K. M., Søgaard, D. H., Piontek, J., Lange, B. A., Katlein, C., Sørensen, H. L., McGinnis, D. F., Rovelli, L., Rysgaard, S., Wenzhöfer, F. & Glud, R. N. (2018). Oxygen fluxes beneath Arctic land-fast ice and pack ice: towards estimates of ice productivity. Polar Biology, 41(10), 2119-2134. https://doi.org/10.1007/s00300-018-2350-1

Hansen, R. S. L., Archidiacono, M., Hannestad, S. & Tram, T. (2016). How to make the short baseline sterile neutrino compatible with cosmology. Proceedings of Science, Part F128556.

Nandy, D. K., Srivatsa, N. S. & Nielsen, A. E. B. (2018). Local Hamiltonians for one-dimensional critical models. Journal of Statistical Mechanics: Theory and Experiment, 2018(6), Article 063107. https://doi.org/10.1088/1742-5468/aac913

Overgaard, K., Friis, S., Pedersen, R. B. & Lykkeboe, G. (2006). Influence of lung volume, glossopharyngeal inhalation and P_ET O₂ and P_ET CO₂ on apnea performance in trained breath-hold divers. European Journal of Applied Physiology, 97(2), 158-164. https://doi.org/10.1007/s00421-006-0156-2

Payandeh Gharibdoust, S., Heere, M., Nervi, C., Sørby, M. H., Hauback, B. C. & Jensen, T. R. (2018). Synthesis, structure, and polymorphic transitions of praseodymium(iii) and neodymium(iii) borohydride, Pr(BH₄)₃ and Nd(BH₄)₃. Dalton Transactions, 47(25), 8307-8319. https://doi.org/10.1039/c8dt00118a

Tamiola, K., Scheek, R. M., Van Der Meulen, P. & Mulder, F. A. A. (2018). PepKalc: Scalable and comprehensive calculation of electrostatic interactions in random coil polypeptides. Bioinformatics, 34(12), 2053-2060. https://doi.org/10.1093/bioinformatics/bty033

Hu, Y., Xie, P., De Corato, M., Ruini, A., Zhao, S., Meggendorfer, F., Straasø, L. A., Rondin, L., Simon, P., Li, J., Finley, J. J., Hansen, M. R., Lauret, J. S., Molinari, E., Feng, X., Barth, J. V., Palma, C. A., Prezzi, D., Müllen, K. & Narita, A. (2018). Bandgap Engineering of Graphene Nanoribbons by Control over Structural Distortion. Journal of the American Chemical Society, 140(25), 7803-7809. https://doi.org/10.1021/jacs.8b02209

Bregnballe, T., Kristensen, C., Sunde, P. & Clausen, K. K. (2018). Effekter af jagt på vandfugle i Skjern Enge: En sammenligning af to modeller for jagtregulering. Videnskabelig rapport fra DCE - Nationalt Center for Miljø og Energi Vol. 251

Klinkhammer, J., Schnepf, D., Ye, L., Schwaderlapp, M., Gad, H. H., Hartmann, R., Garcin, D., Mahlakõiv, T. & Staeheli, P. (2018). IFN-λ prevents influenza virus spread from the upper airways to the lungs and limits virus transmission. eLife, 7, Article e33354. https://doi.org/10.7554/eLife.33354

Carlson, D. F. & Rysgaard, S. (2018). Adapting open-source drone autopilots for real-time iceberg observations. MethodsX, 5, 1059-1072. https://doi.org/10.1016/j.mex.2018.09.003

Holzinger, J., Beato, P., Lundegaard, L. F. & Skibsted, J. (2018). Distribution of Aluminum over the Tetrahedral Sites in ZSM-5 Zeolites and Their Evolution after Steam Treatment. The Journal of Physical Chemistry Part C, 122(27), 15595-15613. https://doi.org/10.1021/acs.jpcc.8b05277

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