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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kjærside, K., Kortbek, K. J., Møller, H. H. & Grønbæk, K. (2005). ARDressCode: Augmented Dressing Room with Tag-based Motion Tracking and Real-Time Clothes Simulation. In Proceedings of Central European Multimedia and Virtual Reality Conference European Association for Computer Graphics.
Rydin, C., Pedersen, K. R., Friis, E. M. & Crane, P. R. (2005). The Gnetales: fossils and phylogenies. In XVII International Botanical Congress, Abstracts (pp. 68-68)
Crane, P. R., Pedersen, K. R. & Friis, E. M. (2006). The origin and early diversification of eudicots. In XVII International Botanical Congress, Abstracts (pp. 101-101)
Friis, E. M., Schönenberger, J. & Pedersen, K. R. (2005). Flowers and phylogenetic affinities of Normapolles plants - a complex of extinct fagalean lineages. In XVII International Botanical Congress, Abstracts (pp. 169-169)
Crane, P. R., Pedersen, K. R. & Friis, E. M. (2005). The origin and early diversification of eudicots. In A Palynology Day (pp. 1). Linnean Society of London.
Friis, E. M., Pedersen, K. R. & Crane, P. R. (2005). Pollen diversity and pollination biology in early angiosperms: evidence from pollen in situ in anthers and coprolites. In A Palynology Day, Abstract (pp. 1). Linnean Society of London.
Thy, P., Jenkins, B. M., Grundvig, S., Shiraki, R. & Lesher, C. E. (2005). High temperature elemental losses and mineralogical changes in common biomass ashes. Fuel, 85, 783-795.
Thy, P., Grundvig, S., Jenkins, B. M., Shiraki, R. & Lesher, C. E. (2005). Analytical controlled losses of potassium from straw ashes. Energy & Fuels, 19, 2571-2575.
Hale, M. L., Gustafsson, M., Borland, A. M. & Wolff, K. (2004). Causes of size homoplasy among chloroplast microsatellites in closely related Clusia species. Journal of Molecular Evolution, 58, 182-190.
Lindgaard, T. & Grønbæk, K. (2005). Automatic geo-referencing of web-pages. In Proceedings of the IADIS International Conference on WWW/Internet 2005 (pp. 200-208). International Association for Development, IADIS.
Gustafsson, M., Bittrich, V. & Stevens, P. F. (2002). Phylogeny of the Clusiaceae based on rbcL sequences. International Journal of Plant Sciences, 163, 1045-1054.
Hansen, K. M. & Ingstrup, M. (2005). Palpable Assemblies: Dynamic Service Composition in Ubiquitous Computing. In W. C. Chu, N. J. Juzgado & W. E. Wong (Eds.), Proceedings of the 17th International Conference on Software Engineering and Knowledge Engineering (pp. 632-638). Knowledge Systems Institute.
Pagter, J. I. & Arge, L. (2000). I/O-Space Trade-Offs: Extended Abstract. In Algorithm Theory - SWAT 2000: 7th Scandinavian Workshop on Algorithm Theory Bergen, Norway, July 5-7, 2000 Proceedings (pp. 509-514). Springer. https://doi.org/10.1007/3-540-44985-X_38
Pagter, J. I. & Rauhe, T. (1998). Optimal Time-Space Trade-Offs for Sorting. In Proc. of 39th Annual Symposium on Foundations of Computer Science (FOCS '98) IEEE. https://doi.org/10.1109/SFCS.1998.743455
Kehlet, C. T., Vosegaard, T., Khaneja, N., Glaser, S. J. & Nielsen, N. C. (2005). Low-power homonuclear dipolar recoupling in solid-state NMR developed using optimal control theory. Chemical Physics Letters, 414, 204-209.
Vosegaard, T., Kehlet, C. T., Khaneja, N., Glaser, S. J. & Nielsen, N. C. (2005). Improved excitation schemes for multiple-quantum magic-angle spinning for quadrupolar nuclei designed using optimal control theory. Journal of the American Chemical Society, 127, 13768-13769.
Bertram, H. C., Kristensen, N. B., Malmendal, A., Nielsen, N. C., Bro, R., Andersen, H. J. & Harmon, D. L. (2005). A metabolomic investigation of splanchnic metabolism using 1H NMR spectroscopy of bovine blood plasma. Analytica Chimica Acta, 536, 1-6.
Boudol, G. & Zimmer, P. (2005). On Type Inference in the Intersection Type Discipline. In Workshop on Intersection Types and Related Systems, ICALP-LICS 2004: Turku, Finland (Vol. 136, pp. 23-42)
Nielsen, N. C. (2005). Computational Aspects of Biological Solid-State NMR Spectroscopy. In NMR Spectroscopy of Biological Solids (pp. Chapter 11). Taylor & Francis.
Bouvin, N. O., Christensen, B. G., Hansen, F. A. & Nielsen, K. L. (2006). Supporting Mobile and Nomadic Learning. In Proceedings of the Workshop on Emerging Applications for Wireless and Mobile Access MobEA III at the 14th World Wide Web Conference
Filinski, A. & Rohde, H. K. (2005). Denotational Aspects of Untyped Normalization by Evaluation. BRICS Report Series, (RS-05-4).
Jehøj, H., Bouvin, N. O. & Grønbæk, K. (2005). AwareDAV: A Generic WebDAV Notification Framework and Implementation. In Proceedings of 14th international World Wide Web Conference (pp. 180-189). Association for Computing Machinery. https://doi.org/10.1145/1060745.1060774
Czumaj, A., Halldorsson, M. M., Lingas, A. & Nilsson, J. P. (2005). Approximation Algorithms for Optimization Problems in Graphs with Super logarithmic Tree width. Information Processing Letters, 94(2), 49-53.
Miltersen, P. B., Radhakrishnan, J. & Wegener, I. (2005). On converting CNF to DNF. Theoretical Computer Science, 347, 325-335.
Miltersen, P. B. (2005). Lower bounds on the size of rank and selection indexes. In Proceedings of the Symposium on Discrete Algorithms (pp. 11-12). Society for Industrial and Applied Mathematics.
Miltersen, P. B. (2005). The Computational Complexity of One-Dimensional Sandpiles. In S. B. Cooper, B. Löwe & L. Torenvliet (Eds.), New Computational Paradigms: First Conference on Computability in Europe, CiE 2005, Amsterdam, The Netherlands, June 8-12, 2005. Proceedings (pp. 342-350). Springer. https://doi.org/10.1007/11494645_42
Hansen, T. R., Eklund, J. M., Sprinkle, J., Bajcsy, R. & Sastry, S. (2005). Using Smart Sensors and a Camera Phone to Detect and Verify the Fall of Elderly Persons. In Proceedings of 3rd European Medical and Biological Engineering Conference: EMBEC 2005 (pp. 2486-2487). IFMBE.
Brodal, G. S., Kaligosi, K., Katriel, I. & Kutz, M. (2005). Faster Algorithms for Computing Longest Common Increasing Subsequences. BRICS Report Series, (RS-05-37).
Hansen, T. R., Eriksson, E. & Lykke-Olesen, A. (2005). Mixed Interaction Spaces - Designing for Camera Based Interaction with Mobile Devices. In CHI 05 (pp. 1933 - 1936). Society for Industrial and Applied Mathematics.
Hansen, T. R., Eriksson, E. & Lykke-Olesen, A. (2005). Mixed Interaction Spaces - a new interaction technique for mobile devices (demonstration). Poster session presented at Ubiquitous Computing Conference 2005, Tokyo, Japan.
Richardson, K. (2005). Oceaner af Vand. In Viden om Vand (1 ed., pp. 109-128). Aarhus Universitetsforlag.
Brynskov, M., Christensen, B. G., Ludvigsen, M., Collins, A.-M. & Grønbæk, K. (2006). Designing for Nomadic Play: A case study of participatory design with children. Poster session presented at Interaction Design and Children 2005, Boulder, CO, United States.
Avgustinov, P., Christensen, A. S., Hendren, L., Kuzins, S., Lhot´ak, J., Lhot´ak, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). abc: An extensible AspectJ compiler. In AOSD 2005 (pp. 87-98)
Brynskov, M. & Ludvigsen, M. (2006). Mock Games: A New Genre of Pervasive Play. In Proceedings of the 6th ACM Conference on Designing Interactive Systems (pp. 169-178). Association for Computing Machinery.

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Petersen, D. G., Blazewicz, S., Waldrop, M., Herman, D. & Firestone, M. (2012). Abundance of functional groups of microorganisms as predictors for potential biogeochemical process rates. Abstract from 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.
Petersen, D. G., Blazewicz, S. J., Firestone, M., Herman, D. J., Turetsky, M. & Waldrop, M. (2012). Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska. Environmental Microbiology, 14(4), 993-1008.
Røy, H., Kallmeyer, J., Adhikari, R. R., Pockalny, R., Jørgensen, B. B. & D'Hondt, S. (2012). Aerobic microbial respiration in 86-million-year-old deep-sea red clay. Science, 336(6083), 922-925. https://doi.org/10.1126/science.1219424
Tilleman, L., Germani, F., De Hau, S., Helbo, S., Desmet, F., Van Doorslaer, S., Schoofs, L., Braeckman, B. B., Fago, A., Moens, L. & Dewilde, S. (2012). A globin domain in a neuronal transmembrane receptor in Caenorhabditis elegans. Abstract from XVII International Conference on Oxygen Binding and Sensing Proteins, Parma, Italy.
Haug, C., Van Roy, P., Leipner, A., Funch, P., Rudkin, D. M., Schöllmann, L. & Haug, J. T. (2012). A holomorph approach to xiphosuran evolution : a case study on the ontogeny of Euproops. Development, Genes and Evolution, 222(5), 253-268. https://doi.org/10.1007/s00427-012-0407-7
Seltmann, K. C., Yoder, M. J., Mikó, I., Forshage, M., Bertone, M. A., Agosti, D., Austin, A. D., Balhoff, J. P., Borowiec, M. L., Brady, S. G., Broad, G. R., Brothers, D. J., Burks, R. A., Buffington, M. L., Campbell, H. M., Dew, K. J., Ernst, A. F., Fernández-Triana, J. L., Gates, M. W. ... Deans, A. R. (2012). A hymenopterist’s guide to the Hymenoptera Anatomy Ontology utility, clarification, and future directions. Journal of Hymenoptera Research, 27, 67-88.
Wang, T. & Malte, H. (2012). A JEB classic on fish exercise. Journal of Experimental Biology, 4052-4054.
Stephansen, D. A., Nielsen, A. H., Hvitved-Jacobsen, T., Arias, C. A., Brix, H. & Vollertsen, J. (2012). Allocation of metal concentrations in sediments and biota from stormwater ponds and rural, shallow lakes. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.
Fago, A. & Helbo, S. (2012). Allosteric effects and enzymatic functions of fish myoglobins in the protection against hypoxia. Abstract from XVII International Conference on Oxygen Binding and Sensing Proteins, Parma, Italy.
Weber, R. E., Fago, A., Malte, H., Storz, J. & Gorr, T. A. (2012). Allosteric Modulation of Oxygen Affinity in Dwarf Caiman Hemoglobin that Lacks Conventional Proton and Anion Binding Sites. Abstract from XVII International Conference on Oxygen Binding and Sensing Proteins, Parma, Italy.
Damsgaard, C., Fago, A., Hagner-Holler, S., Malte, H., Burmester, T. & Weber, R. E. (2012). Allosteric regulation of O2 binding in hemocyanin of the millipede, Archispirostreptus gigas, and its molecular underpinnings. Abstract from XVII International Conference on Oxygen Binding and Sensing Proteins, Parma, Italy.
Biddle, J., Cardman, Z., Mendlovitz, H., Albert, D., Lloyd, K., Boetius, A. & Teske, A. (2012). Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. I S M E Journal, 6, 1018-1031.
Blazewicz, S., Petersen, D. G., Waldrop, M. & Firestone, M. (2012). Anaerobic oxidation of methane in tropical and boreal soils: ecological significance in terrestrial methane cycling. Journal of Geophysical Research: Biogeosciences, 117(G2).
Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H.-J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C. ... Schook, L. B. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491(7424), 393-398. https://doi.org/10.1038/nature11622
Jin, X., He, M., Ferguson, B., Meng, Y., Ouyang, L., Ren, J., Mailund, T., Sun, F., Sun, L., Shen, J., Zhuo, M., Song, L., Wang, J., Ling, F., Zhu, Y., Hvilsom, C., Siegismund, H., Liu, X., Gong, Z. ... Wang, X. (2012). An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes. PLoS One, 7(7), e40637. https://doi.org/10.1371/journal.pone.0040637
Arias, C. A., Istenic, D., Nielsen, A. H., Wium-Andersen, T. & Vollertsen, J. (2012). A new Approach to Run Off pollution treatment: Planted wetponds. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.
Guareschi, S., Gutiérrez-Cánovas, C., Picazo, F., Sánchez-Fernández, D., Rodenas, P. A., Velasco, J. & Millán, A. (2012). Aquatic macroinvertebrate biodiversity: patterns and surrogates in mountainous Spanish national parks. Aquatic Conservation, 22(5), 598-615. https://doi.org/10.1002/aqc.2256
Kubo, K., Lloyd, K., Biddle, J., Amann, R., Teske, A. & Knittel, K. (2012). Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. I S M E Journal, 6(10), 1949-1965.
Cámara-Leret, R., Paniagua-Zambrana, N. & Macia, M. J. (2012). A standard protocol for gathering palm ethnobotanical data and socioeconomic variables across the tropics. In B. Ponman & R. Busmann (Eds.), Medicinal Plants and the Legacy of R.E. Schultes (pp. 41-71). Missouri Botanical Garden Press.
C. Koblitz, J., Wahlberg, M., Stilz, P., Madsen, P. P. T., Beedholm, K. & Schnitzler, H.-U. (2012). Asymmetry and dynamics of a narrow sonar beam in an echolocating harbor porpoise. Acoustical Society of America. Journal, 131(3), 2315-2324. https://doi.org/10.1121/1.3683254
Temkiv, T. S., Finster, K., Hansen, B. M., Pasic, L. & Karlson, U. G. (2012). Atmospheric methane oxidation by airborne methanotrophic bacteria at cloudlike conditions. Abstract from ISME Conference 2012, København, Denmark.
Waldrop, M. P., Harden, J. W., Turetsky, M. R., Petersen, D. G., McGuire, A. D., Briones, M. J. I., Churchill, A. D., Doctor, D. H. & Pruett, L. E. (2012). Bacterial and enchytraeid abundance accelerate soil carbon turnover along a lowland vegetation gradient in interior Alaska. Soil Biology & Biochemistry.
Mitsunobu, S., Shiraishi, F., Makita, H., Orcutt, B., Kikuchi, S., Jørgensen, B. B. & Takahashi, Y. (2012). Bacteriogenic Fe(III) (Oxyhydr)oxides Characterized by Synchrotron Microprobe Coupled with Spatially Resolved Phylogenetic Analysis. Environmental Science & Technology, 46(6), 3304-3311.
Winther, G., Wang, T., Lund, S. & Wegener, G. (2012). Betydning af magnesium i psykisk sygdom. Poster session presented at Psykiatriens 7. Forskningsdag, Risskov, Denmark.
Hagen, M., Kissling, W. D., Rasmussen, C., De Aguiar, M. A. M., Brown, L. E., Carstensen, D. W., Alves-Dos-Santos, I., Dupont, Y., Edwards, F. K., Genini, J., Guimarães Jr., P. R., Jenkins, G. B., Jordano, P., Kaiser-Bunbury, C., Ledger, M. E., Maia, K. P., Marquitti, F. M. D., Mclaughlin, Ó., Morellato, L. P. ... Olesen, J. M. (2012). Biodiversity, Species Interactions and Ecological Networks in a Fragmented World. Advances in Ecological Research, 46(2012), 89-120. https://doi.org/10.1016/B978-0-12-396992-7.00002-2
Markfoged, R., Nielsen, L. P. & Revsbech, N. P. (2012). Biofilm formation at the oxic-anoxic interface of liquid manure. Abstract from ISME 14 - The power of the small , Copenhagen, Denmark.
Markfoged, R., Nielsen, L. P. & Revsbech, N. P. (2012). Biofilm formation at the oxic‐anoxic interface of liquid manure. Poster session presented at ISME 14 - The power of the small , Copenhagen, Denmark.